Wall clock time and date at job start Tue Mar 31 2020 11:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46669 * 2 1 4 4 C 1.52994 * 109.47664 * 120.00141 * 2 1 3 5 5 C 1.52994 * 109.47559 * 183.36919 * 4 2 1 6 6 C 1.50699 * 109.47537 * 183.56051 * 5 4 2 7 7 H 1.08004 * 119.99759 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00156 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00184 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99987 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47157 * 89.99646 * 10 8 6 12 12 H 1.48500 * 109.46976 * 209.99571 * 10 8 6 13 13 H 1.48506 * 109.46990 * 329.99363 * 10 8 6 14 14 N 1.46902 * 109.47086 * 240.00476 * 2 1 3 15 15 C 1.46900 * 110.99748 * 73.27055 * 14 2 1 16 16 C 1.46894 * 110.99958 * 309.31604 * 14 2 1 17 17 C 1.50702 * 109.47250 * 189.99766 * 16 14 2 18 18 C 1.38282 * 119.92823 * 269.73197 * 17 16 14 19 19 C 1.38105 * 120.07396 * 179.72409 * 18 17 16 20 20 C 1.38907 * 119.92345 * 0.54744 * 19 18 17 21 21 N 1.39674 * 120.07360 * 179.70820 * 20 19 18 22 22 C 1.48535 * 111.00294 * 116.87825 * 21 20 19 23 23 C 1.54936 * 103.22694 * 159.72134 * 22 21 20 24 24 C 1.54595 * 102.92104 * 322.58576 * 23 22 21 25 25 C 1.47904 * 110.99883 * 234.27538 * 21 20 19 26 26 C 1.38908 * 119.85261 * 359.72333 * 20 19 18 27 27 C 1.38105 * 119.92468 * 0.02562 * 26 20 19 28 28 H 1.08994 * 109.47619 * 59.99866 * 1 2 3 29 29 H 1.08997 * 109.46966 * 299.99155 * 1 2 3 30 30 H 1.09002 * 109.46669 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47197 * 303.37294 * 4 2 1 32 32 H 1.09005 * 109.47110 * 63.37051 * 4 2 1 33 33 H 1.08999 * 109.47099 * 303.56491 * 5 4 2 34 34 H 1.08998 * 109.47244 * 63.56046 * 5 4 2 35 35 H 0.96989 * 120.00186 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.47311 * 53.51533 * 15 14 2 37 37 H 1.09005 * 109.46814 * 173.51054 * 15 14 2 38 38 H 1.09001 * 109.47572 * 293.50899 * 15 14 2 39 39 H 1.08999 * 109.47565 * 310.00209 * 16 14 2 40 40 H 1.09002 * 109.47360 * 70.00036 * 16 14 2 41 41 H 1.08006 * 119.96339 * 359.97304 * 18 17 16 42 42 H 1.08007 * 120.03597 * 180.26748 * 19 18 17 43 43 H 1.09003 * 110.66524 * 278.15223 * 22 21 20 44 44 H 1.09000 * 110.66759 * 41.28469 * 22 21 20 45 45 H 1.09000 * 110.72350 * 204.22862 * 23 22 21 46 46 H 1.08998 * 110.72674 * 80.94328 * 23 22 21 47 47 H 1.09007 * 110.30968 * 263.04066 * 24 23 22 48 48 H 1.09001 * 110.30731 * 140.87694 * 24 23 22 49 49 H 1.08999 * 109.91233 * 333.50662 * 25 21 20 50 50 H 1.08997 * 109.91411 * 94.60298 * 25 21 20 51 51 H 1.08002 * 120.03748 * 180.02562 * 26 20 19 52 52 H 1.07996 * 119.96058 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 3.5677 -0.6482 1.2922 6 6 4.0750 -1.4326 2.4747 7 1 3.3776 -1.9336 3.1298 8 6 5.4296 -1.5117 2.7197 9 7 5.8723 -2.1958 3.7520 10 14 6.6359 -0.6459 1.5862 11 1 6.8785 0.7328 2.0818 12 1 7.9174 -1.3957 1.5615 13 1 6.0706 -0.5864 0.2143 14 7 2.0197 -0.6924 -1.1995 15 6 1.8229 0.1312 -2.3999 16 6 1.3759 -2.0042 -1.3498 17 6 2.0707 -2.7832 -2.4368 18 6 1.6336 -2.6823 -3.7449 19 6 2.2716 -3.3904 -4.7443 20 6 3.3463 -4.2134 -4.4326 21 7 3.9901 -4.9357 -5.4400 22 6 5.4052 -4.5071 -5.5811 23 6 6.0679 -5.7054 -6.3059 24 6 5.3609 -6.9260 -5.6733 25 6 4.0361 -6.3771 -5.1119 26 6 3.7793 -4.3168 -3.1167 27 6 3.1400 -3.6019 -2.1230 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6283 -0.2435 2.1382 32 1 1.7270 -1.7649 1.2194 33 1 3.9776 -1.0691 0.3741 34 1 3.8793 0.3921 1.3857 35 1 6.8251 -2.2511 3.9246 36 1 2.2707 1.1128 -2.2445 37 1 2.2962 -0.3529 -3.2542 38 1 0.7560 0.2448 -2.5918 39 1 1.4439 -2.5521 -0.4100 40 1 0.3277 -1.8663 -1.6149 41 1 0.7948 -2.0459 -3.9858 42 1 1.9325 -3.3078 -5.7664 43 1 5.4750 -3.6042 -6.1878 44 1 5.8592 -4.3504 -4.6026 45 1 7.1389 -5.7333 -6.1051 46 1 5.8764 -5.6617 -7.3780 47 1 5.9692 -7.3411 -4.8696 48 1 5.1652 -7.6846 -6.4312 49 1 4.0062 -6.5130 -4.0308 50 1 3.1927 -6.8902 -5.5739 51 1 4.6148 -4.9555 -2.8711 52 1 3.4764 -3.6815 -1.0998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172503922.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:22 Heat of formation + Delta-G solvation = 31.011834 kcal Electronic energy + Delta-G solvation = -27035.398450 eV Core-core repulsion = 23613.375260 eV Total energy + Delta-G solvation = -3422.023189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.33322 -38.85165 -37.36153 -33.74055 -32.82387 -31.59890 -30.87621 -29.73816 -29.09455 -28.99628 -26.40694 -25.41970 -23.75690 -22.91583 -21.96716 -21.13501 -20.71897 -20.32877 -19.03520 -17.31441 -16.59786 -16.30567 -16.14250 -15.25290 -14.97009 -14.53665 -14.28965 -14.27326 -14.14276 -13.96285 -13.36563 -13.31154 -13.24078 -12.80163 -12.58760 -12.54000 -12.27961 -12.20354 -12.04737 -11.88955 -11.60581 -11.52079 -11.47940 -11.36188 -11.25709 -11.01394 -10.86271 -10.81767 -10.71526 -10.41182 -9.76904 -9.65988 -9.44743 -9.00752 -8.80645 -8.73441 -8.43983 -8.39199 -7.86871 -5.95250 -3.91270 1.30855 1.54138 3.38153 3.45317 3.54607 3.70473 3.76555 4.39196 4.43047 4.55414 4.57626 4.72390 4.94559 4.99152 5.08607 5.09326 5.22892 5.27044 5.36214 5.40775 5.41011 5.45325 5.48269 5.50993 5.54749 5.58780 5.65324 5.67368 5.74124 5.74559 5.76875 5.88232 5.90542 5.93394 6.07816 6.11297 6.16832 6.22732 6.25948 6.40263 6.52457 6.54871 6.60964 6.69267 6.80602 6.88456 7.08162 7.36724 7.39066 7.43568 7.53779 7.73858 7.93761 8.64826 9.10929 9.69306 11.18518 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010361 B = 0.003967 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.867173 B = 7056.616370 C = 8945.271581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.077 3.923 3 H 0.077 0.923 4 C -0.093 4.093 5 C -0.007 4.007 6 C -0.516 4.516 7 H 0.067 0.933 8 C 0.066 3.934 9 N -0.909 5.909 10 Si 0.875 3.125 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.260 1.260 14 N -0.520 5.520 15 C 0.022 3.978 16 C 0.090 3.910 17 C -0.071 4.071 18 C -0.111 4.111 19 C -0.100 4.100 20 C 0.071 3.929 21 N -0.483 5.483 22 C 0.037 3.963 23 C -0.123 4.123 24 C -0.132 4.132 25 C 0.035 3.965 26 C -0.150 4.150 27 C -0.082 4.082 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.033 0.967 34 H 0.003 0.997 35 H 0.260 0.740 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.020 0.980 39 H 0.091 0.909 40 H 0.040 0.960 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.083 0.917 44 H 0.053 0.947 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.068 0.932 48 H 0.072 0.928 49 H 0.053 0.947 50 H 0.079 0.921 51 H 0.117 0.883 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.102 -4.128 -20.754 22.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.031 4.031 3 H 0.096 0.904 4 C -0.131 4.131 5 C -0.045 4.045 6 C -0.554 4.554 7 H 0.086 0.914 8 C -0.135 4.135 9 N -0.549 5.549 10 Si 0.703 3.297 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.184 1.184 14 N -0.243 5.243 15 C -0.126 4.126 16 C -0.037 4.037 17 C -0.071 4.071 18 C -0.130 4.130 19 C -0.118 4.118 20 C -0.023 4.023 21 N -0.204 5.204 22 C -0.089 4.089 23 C -0.161 4.161 24 C -0.170 4.170 25 C -0.091 4.091 26 C -0.169 4.169 27 C -0.101 4.101 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.021 0.979 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.039 0.961 39 H 0.109 0.891 40 H 0.058 0.942 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.101 0.899 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.087 0.913 48 H 0.091 0.909 49 H 0.072 0.928 50 H 0.098 0.902 51 H 0.135 0.865 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.725 -4.165 -21.089 22.523 hybrid contribution 0.356 0.463 0.247 0.634 sum -6.369 -3.701 -20.841 22.105 Atomic orbital electron populations 1.22490 0.98453 1.01864 1.01472 1.21941 0.91538 0.98379 0.91194 0.90433 1.21534 0.99184 0.98920 0.93484 1.19481 0.91253 0.96021 0.97698 1.21248 0.92528 1.31227 1.10389 0.91440 1.25000 0.98413 0.95040 0.95003 1.69926 1.14158 1.42260 1.28574 0.86826 0.80475 0.79674 0.82716 1.20584 1.21770 1.18413 1.62130 1.57427 1.02276 1.02424 1.22438 0.98586 0.97905 0.93684 1.21128 0.94398 0.90487 0.97731 1.19849 0.96341 0.96761 0.94165 1.20962 1.00126 0.99583 0.92325 1.20831 0.95187 0.96626 0.99205 1.18917 0.96458 0.97627 0.89266 1.62420 1.14501 1.02663 1.40860 1.23352 0.86837 0.98658 1.00068 1.22490 0.99331 0.93924 1.00398 1.22413 0.95888 0.98165 1.00516 1.22999 0.98330 0.87980 0.99803 1.21591 1.00686 1.01178 0.93487 1.21089 0.94324 0.94779 0.99943 0.93428 0.92135 0.92446 0.92761 0.92781 0.94906 0.97858 0.92994 0.91815 0.91482 0.96145 0.89052 0.94207 0.86348 0.85893 0.89851 0.92915 0.90866 0.90709 0.91310 0.90930 0.92844 0.90246 0.86472 0.85085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 8.40 37.16 0.31 -2.07 16 2 C 0.08 1.23 2.31 -67.71 -0.16 1.07 16 3 H 0.08 1.24 7.91 -51.93 -0.41 0.83 16 4 C -0.09 -1.82 4.59 -26.74 -0.12 -1.95 16 5 C -0.01 -0.17 3.96 -27.89 -0.11 -0.28 16 6 C -0.52 -14.86 9.66 -34.44 -0.33 -15.20 16 7 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 8 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 9 N -0.91 -28.54 13.96 55.43 0.77 -27.77 16 10 Si 0.88 22.42 27.47 -169.99 -4.67 17.75 16 11 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 13 H -0.26 -6.49 6.54 56.52 0.37 -6.13 16 14 N -0.52 -8.12 4.00 -236.33 -0.95 -9.06 16 15 C 0.02 0.29 8.80 60.06 0.53 0.82 16 16 C 0.09 1.29 3.95 -4.98 -0.02 1.27 16 17 C -0.07 -1.00 4.88 -104.59 -0.51 -1.51 16 18 C -0.11 -1.37 8.03 -39.61 -0.32 -1.69 16 19 C -0.10 -1.23 9.97 -39.38 -0.39 -1.62 16 20 C 0.07 0.92 4.86 -83.79 -0.41 0.52 16 21 N -0.48 -5.57 5.28 -167.16 -0.88 -6.45 16 22 C 0.04 0.39 6.43 -1.90 -0.01 0.38 16 23 C -0.12 -1.02 7.06 -24.87 -0.18 -1.20 16 24 C -0.13 -1.08 6.93 -25.38 -0.18 -1.26 16 25 C 0.04 0.36 6.49 -2.75 -0.02 0.34 16 26 C -0.15 -2.08 7.90 -39.38 -0.31 -2.40 16 27 C -0.08 -1.26 9.69 -39.61 -0.38 -1.64 16 28 H 0.05 0.56 6.96 -51.93 -0.36 0.20 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.73 6.53 -51.93 -0.34 0.39 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 1.06 6.37 -51.93 -0.33 0.73 16 33 H 0.03 0.82 6.66 -51.93 -0.35 0.47 16 34 H 0.00 0.08 7.57 -51.93 -0.39 -0.32 16 35 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 36 H 0.06 0.82 7.97 -51.93 -0.41 0.41 16 37 H 0.07 0.88 6.34 -51.93 -0.33 0.55 16 38 H 0.02 0.24 7.00 -51.93 -0.36 -0.13 16 39 H 0.09 1.44 6.14 -51.93 -0.32 1.12 16 40 H 0.04 0.51 6.75 -51.93 -0.35 0.16 16 41 H 0.12 1.25 8.04 -52.48 -0.42 0.83 16 42 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.05 0.60 7.02 -51.93 -0.36 0.24 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.05 0.57 6.30 -51.93 -0.33 0.25 16 50 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.12 1.55 7.04 -52.49 -0.37 1.18 16 52 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 393.01 15.07 5.92 5.92 Total: -1.00 -31.40 393.01 -11.76 -43.16 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -9.25 Total: 1.01 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: -2.70 Total: -24.56 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: -1.05 Total: -43.28 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.40 -11.76 -43.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503922.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.174 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds