Wall clock time and date at job start Tue Mar 31 2020 11:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46669 * 2 1 4 4 C 1.52994 * 109.47664 * 120.00141 * 2 1 3 5 5 C 1.52994 * 109.47559 * 183.36919 * 4 2 1 6 6 C 1.50699 * 109.47537 * 183.56051 * 5 4 2 7 7 H 1.08004 * 119.99759 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00156 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00184 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99987 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47157 * 89.99646 * 10 8 6 12 12 H 1.48500 * 109.46976 * 209.99571 * 10 8 6 13 13 H 1.48506 * 109.46990 * 329.99363 * 10 8 6 14 14 N 1.46902 * 109.47086 * 240.00476 * 2 1 3 15 15 C 1.46900 * 110.99748 * 73.27055 * 14 2 1 16 16 C 1.46894 * 110.99958 * 309.31604 * 14 2 1 17 17 C 1.50702 * 109.47250 * 189.99766 * 16 14 2 18 18 C 1.38282 * 119.92823 * 269.73197 * 17 16 14 19 19 C 1.38105 * 120.07396 * 179.72409 * 18 17 16 20 20 C 1.38907 * 119.92345 * 0.54744 * 19 18 17 21 21 N 1.39674 * 120.07360 * 179.70820 * 20 19 18 22 22 C 1.48535 * 111.00294 * 116.87825 * 21 20 19 23 23 C 1.54936 * 103.22694 * 159.72134 * 22 21 20 24 24 C 1.54595 * 102.92104 * 322.58576 * 23 22 21 25 25 C 1.47904 * 110.99883 * 234.27538 * 21 20 19 26 26 C 1.38908 * 119.85261 * 359.72333 * 20 19 18 27 27 C 1.38105 * 119.92468 * 0.02562 * 26 20 19 28 28 H 1.08994 * 109.47619 * 59.99866 * 1 2 3 29 29 H 1.08997 * 109.46966 * 299.99155 * 1 2 3 30 30 H 1.09002 * 109.46669 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47197 * 303.37294 * 4 2 1 32 32 H 1.09005 * 109.47110 * 63.37051 * 4 2 1 33 33 H 1.08999 * 109.47099 * 303.56491 * 5 4 2 34 34 H 1.08998 * 109.47244 * 63.56046 * 5 4 2 35 35 H 0.96989 * 120.00186 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.47311 * 53.51533 * 15 14 2 37 37 H 1.09005 * 109.46814 * 173.51054 * 15 14 2 38 38 H 1.09001 * 109.47572 * 293.50899 * 15 14 2 39 39 H 1.08999 * 109.47565 * 310.00209 * 16 14 2 40 40 H 1.09002 * 109.47360 * 70.00036 * 16 14 2 41 41 H 1.08006 * 119.96339 * 359.97304 * 18 17 16 42 42 H 1.08007 * 120.03597 * 180.26748 * 19 18 17 43 43 H 1.09003 * 110.66524 * 278.15223 * 22 21 20 44 44 H 1.09000 * 110.66759 * 41.28469 * 22 21 20 45 45 H 1.09000 * 110.72350 * 204.22862 * 23 22 21 46 46 H 1.08998 * 110.72674 * 80.94328 * 23 22 21 47 47 H 1.09007 * 110.30968 * 263.04066 * 24 23 22 48 48 H 1.09001 * 110.30731 * 140.87694 * 24 23 22 49 49 H 1.08999 * 109.91233 * 333.50662 * 25 21 20 50 50 H 1.08997 * 109.91411 * 94.60298 * 25 21 20 51 51 H 1.08002 * 120.03748 * 180.02562 * 26 20 19 52 52 H 1.07996 * 119.96058 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 3.5677 -0.6482 1.2922 6 6 4.0750 -1.4326 2.4747 7 1 3.3776 -1.9336 3.1298 8 6 5.4296 -1.5117 2.7197 9 7 5.8723 -2.1958 3.7520 10 14 6.6359 -0.6459 1.5862 11 1 6.8785 0.7328 2.0818 12 1 7.9174 -1.3957 1.5615 13 1 6.0706 -0.5864 0.2143 14 7 2.0197 -0.6924 -1.1995 15 6 1.8229 0.1312 -2.3999 16 6 1.3759 -2.0042 -1.3498 17 6 2.0707 -2.7832 -2.4368 18 6 1.6336 -2.6823 -3.7449 19 6 2.2716 -3.3904 -4.7443 20 6 3.3463 -4.2134 -4.4326 21 7 3.9901 -4.9357 -5.4400 22 6 5.4052 -4.5071 -5.5811 23 6 6.0679 -5.7054 -6.3059 24 6 5.3609 -6.9260 -5.6733 25 6 4.0361 -6.3771 -5.1119 26 6 3.7793 -4.3168 -3.1167 27 6 3.1400 -3.6019 -2.1230 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6283 -0.2435 2.1382 32 1 1.7270 -1.7649 1.2194 33 1 3.9776 -1.0691 0.3741 34 1 3.8793 0.3921 1.3857 35 1 6.8251 -2.2511 3.9246 36 1 2.2707 1.1128 -2.2445 37 1 2.2962 -0.3529 -3.2542 38 1 0.7560 0.2448 -2.5918 39 1 1.4439 -2.5521 -0.4100 40 1 0.3277 -1.8663 -1.6149 41 1 0.7948 -2.0459 -3.9858 42 1 1.9325 -3.3078 -5.7664 43 1 5.4750 -3.6042 -6.1878 44 1 5.8592 -4.3504 -4.6026 45 1 7.1389 -5.7333 -6.1051 46 1 5.8764 -5.6617 -7.3780 47 1 5.9692 -7.3411 -4.8696 48 1 5.1652 -7.6846 -6.4312 49 1 4.0062 -6.5130 -4.0308 50 1 3.1927 -6.8902 -5.5739 51 1 4.6148 -4.9555 -2.8711 52 1 3.4764 -3.6815 -1.0998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172503922.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:21 Heat of formation + Delta-G solvation = 13.389458 kcal Electronic energy + Delta-G solvation = -27036.162613 eV Core-core repulsion = 23613.375260 eV Total energy + Delta-G solvation = -3422.787353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.29312 -39.93251 -38.40393 -35.51943 -34.17255 -33.14547 -31.91577 -31.12894 -30.13260 -29.85517 -27.51111 -27.03500 -24.99736 -23.94297 -23.02555 -22.48107 -21.84561 -21.36371 -20.34106 -18.81001 -18.25181 -17.29965 -17.15890 -16.34608 -16.22255 -16.12492 -15.69579 -15.27452 -15.14705 -14.92166 -14.82123 -14.36735 -14.31230 -14.25746 -14.13911 -13.62627 -13.54775 -13.44393 -13.09390 -13.03970 -12.92397 -12.81302 -12.53370 -12.38431 -12.29398 -12.11666 -12.05067 -11.96329 -11.87847 -11.66063 -11.48804 -11.42045 -11.34624 -11.05210 -10.72813 -9.85355 -9.67004 -9.42903 -8.99006 -8.27628 -6.28743 0.27259 0.47856 1.32770 1.35309 1.50105 2.37181 2.65133 2.90593 3.09132 3.27712 3.67694 3.85269 3.87582 3.93169 4.00031 4.02428 4.08245 4.28327 4.29752 4.34844 4.37904 4.45944 4.53310 4.54896 4.57948 4.65788 4.71869 4.77575 4.77758 4.87184 4.89313 4.92142 4.96005 4.98470 5.01184 5.06187 5.10591 5.11147 5.15139 5.23854 5.24844 5.35506 5.39636 5.54538 5.59604 5.69877 5.73153 5.74645 5.77539 5.87037 6.25622 6.32861 6.35172 6.41358 6.79881 7.35579 8.89506 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010361 B = 0.003967 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.867173 B = 7056.616370 C = 8945.271581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.085 3.915 3 H 0.079 0.921 4 C -0.088 4.088 5 C 0.003 3.997 6 C -0.525 4.525 7 H 0.029 0.971 8 C 0.006 3.994 9 N -0.955 5.955 10 Si 0.945 3.055 11 H -0.267 1.267 12 H -0.287 1.287 13 H -0.251 1.251 14 N -0.545 5.545 15 C 0.025 3.975 16 C 0.096 3.904 17 C -0.079 4.079 18 C -0.100 4.100 19 C -0.098 4.098 20 C 0.071 3.929 21 N -0.485 5.485 22 C 0.032 3.968 23 C -0.117 4.117 24 C -0.128 4.128 25 C 0.031 3.969 26 C -0.157 4.157 27 C -0.106 4.106 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.026 0.974 34 H 0.005 0.995 35 H 0.264 0.736 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.043 0.957 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.086 0.914 44 H 0.037 0.963 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.070 0.930 48 H 0.089 0.911 49 H 0.040 0.960 50 H 0.085 0.915 51 H 0.113 0.887 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.890 -2.944 -24.166 25.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.023 4.023 3 H 0.097 0.903 4 C -0.126 4.126 5 C -0.035 4.035 6 C -0.563 4.563 7 H 0.047 0.953 8 C -0.190 4.190 9 N -0.596 5.596 10 Si 0.769 3.231 11 H -0.192 1.192 12 H -0.213 1.213 13 H -0.174 1.174 14 N -0.269 5.269 15 C -0.122 4.122 16 C -0.031 4.031 17 C -0.080 4.080 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.023 4.023 21 N -0.207 5.207 22 C -0.094 4.094 23 C -0.155 4.155 24 C -0.166 4.166 25 C -0.095 4.095 26 C -0.177 4.177 27 C -0.126 4.126 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.023 0.977 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.163 0.837 42 H 0.161 0.839 43 H 0.104 0.896 44 H 0.055 0.945 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.088 0.912 48 H 0.107 0.893 49 H 0.058 0.942 50 H 0.104 0.896 51 H 0.131 0.869 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.529 -2.976 -24.507 25.809 hybrid contribution 0.574 0.012 1.356 1.473 sum -6.955 -2.964 -23.151 24.354 Atomic orbital electron populations 1.22372 0.95789 1.02351 1.02805 1.21735 0.93574 0.97511 0.89457 0.90261 1.21412 0.96029 0.99173 0.95960 1.19345 0.94422 0.94775 0.94945 1.21624 0.92245 1.31168 1.11268 0.95270 1.25917 1.00546 0.95895 0.96606 1.70073 1.14800 1.44088 1.30660 0.85726 0.77804 0.78807 0.80756 1.19221 1.21261 1.17434 1.62032 1.58518 1.03045 1.03304 1.22436 1.00072 0.97378 0.92333 1.21027 0.95529 0.89814 0.96710 1.19879 0.96158 0.96780 0.95148 1.21165 1.00340 0.99247 0.91147 1.21112 0.94562 0.95822 1.00202 1.19094 0.96644 0.97643 0.88957 1.62523 1.14977 1.03221 1.39950 1.23417 0.86482 0.99904 0.99628 1.22489 0.99751 0.92617 1.00615 1.22420 0.94750 0.98487 1.00962 1.23076 0.99808 0.87430 0.99229 1.21592 1.00784 1.01295 0.94040 1.20989 0.95910 0.96709 0.98945 0.91246 0.91633 0.92380 0.93020 0.93711 0.95595 0.97713 0.92747 0.91670 0.91495 0.93885 0.91572 0.91976 0.83685 0.83852 0.89590 0.94483 0.89790 0.89717 0.91159 0.89266 0.94170 0.89617 0.86856 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.05 8.40 71.98 0.60 -3.45 16 2 C 0.09 2.57 2.31 44.91 0.10 2.68 16 3 H 0.08 2.37 7.91 -2.39 -0.02 2.35 16 4 C -0.09 -3.47 4.59 30.59 0.14 -3.33 16 5 C 0.00 0.13 3.96 29.85 0.12 0.24 16 6 C -0.52 -31.44 9.66 25.60 0.25 -31.19 16 7 H 0.03 1.91 7.99 -2.91 -0.02 1.88 16 8 C 0.01 0.39 5.47 84.65 0.46 0.85 16 9 N -0.95 -61.88 13.96 21.45 0.30 -61.58 16 10 Si 0.94 46.93 27.47 68.60 1.88 48.81 16 11 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 12 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 13 H -0.25 -11.97 6.54 99.48 0.65 -11.32 16 14 N -0.55 -16.22 4.00 -901.62 -3.61 -19.83 16 15 C 0.03 0.59 8.80 127.69 1.12 1.72 16 16 C 0.10 2.68 3.95 85.56 0.34 3.02 16 17 C -0.08 -2.20 4.88 -19.84 -0.10 -2.29 16 18 C -0.10 -2.23 8.03 22.25 0.18 -2.06 16 19 C -0.10 -2.20 9.97 22.40 0.22 -1.98 16 20 C 0.07 1.78 4.86 38.21 0.19 1.96 16 21 N -0.49 -10.58 5.28 -682.78 -3.60 -14.19 16 22 C 0.03 0.63 6.43 86.65 0.56 1.19 16 23 C -0.12 -1.71 7.06 31.80 0.22 -1.48 16 24 C -0.13 -1.88 6.93 31.47 0.22 -1.67 16 25 C 0.03 0.60 6.49 86.45 0.56 1.16 16 26 C -0.16 -4.51 7.90 22.40 0.18 -4.33 16 27 C -0.11 -3.39 9.69 22.25 0.22 -3.17 16 28 H 0.07 1.34 6.96 -2.39 -0.02 1.32 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.34 6.53 -2.39 -0.02 1.33 16 31 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.04 1.83 6.37 -2.38 -0.02 1.81 16 33 H 0.03 1.30 6.66 -2.39 -0.02 1.29 16 34 H 0.00 0.22 7.57 -2.39 -0.02 0.20 16 35 H 0.26 15.98 8.31 -92.72 -0.77 15.21 16 36 H 0.06 1.49 7.97 -2.39 -0.02 1.47 16 37 H 0.07 1.56 6.34 -2.38 -0.02 1.54 16 38 H 0.04 0.81 7.00 -2.39 -0.02 0.79 16 39 H 0.07 2.15 6.14 -2.39 -0.01 2.14 16 40 H 0.06 1.43 6.75 -2.39 -0.02 1.42 16 41 H 0.15 2.46 8.04 -2.91 -0.02 2.44 16 42 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 43 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.04 0.85 7.02 -2.39 -0.02 0.83 16 45 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 48 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.04 0.87 6.30 -2.39 -0.02 0.86 16 50 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.11 3.20 7.04 -2.91 -0.02 3.18 16 52 H 0.10 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -69.70 393.01 1.37 -68.33 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.81 Total: 20.58 kcal Atomic # 6 Polarization: -47.71 SS G_CDS: 5.58 Total: -42.13 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -6.91 Total: -95.59 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.88 Total: 48.81 kcal Total: -69.70 1.37 -68.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503922.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.718 kcal (2) G-P(sol) polarization free energy of solvation -69.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds