Wall clock time and date at job start Tue Mar 31 2020 11:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.47139 * 2 1 4 4 C 1.53000 * 109.47041 * 240.00044 * 2 1 3 5 5 C 1.53001 * 109.46911 * 177.61000 * 4 2 1 6 6 C 1.50699 * 109.47196 * 184.95178 * 5 4 2 7 7 H 1.08009 * 119.99850 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00414 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00325 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99916 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47420 * 89.99698 * 10 8 6 12 12 H 1.48500 * 109.47281 * 209.99754 * 10 8 6 13 13 H 1.48500 * 109.47193 * 329.99752 * 10 8 6 14 14 N 1.46896 * 109.47275 * 119.99556 * 2 1 3 15 15 C 1.46899 * 111.00502 * 290.48556 * 14 2 1 16 16 C 1.46900 * 111.00087 * 54.44564 * 14 2 1 17 17 C 1.50692 * 109.47749 * 169.99875 * 16 14 2 18 18 C 1.38290 * 119.92396 * 269.72872 * 17 16 14 19 19 C 1.38106 * 120.07516 * 179.72196 * 18 17 16 20 20 C 1.38913 * 119.92193 * 0.54279 * 19 18 17 21 21 N 1.39672 * 120.07288 * 179.70142 * 20 19 18 22 22 C 1.48537 * 110.99892 * 116.77528 * 21 20 19 23 23 C 1.54932 * 103.22779 * 159.72230 * 22 21 20 24 24 C 1.54598 * 102.92378 * 322.58449 * 23 22 21 25 25 C 1.47898 * 111.00183 * 234.17054 * 21 20 19 26 26 C 1.38908 * 119.84988 * 359.72876 * 20 19 18 27 27 C 1.38104 * 119.93042 * 359.97438 * 26 20 19 28 28 H 1.08998 * 109.46477 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47210 * 299.99993 * 1 2 3 30 30 H 1.08994 * 109.47036 * 60.00122 * 1 2 3 31 31 H 1.08995 * 109.47087 * 297.60543 * 4 2 1 32 32 H 1.08999 * 109.47223 * 57.61316 * 4 2 1 33 33 H 1.09007 * 109.47145 * 304.94712 * 5 4 2 34 34 H 1.08993 * 109.47455 * 64.94728 * 5 4 2 35 35 H 0.97002 * 120.00186 * 180.02562 * 9 8 6 36 36 H 1.08995 * 109.47287 * 190.18736 * 15 14 2 37 37 H 1.08999 * 109.46728 * 70.19081 * 15 14 2 38 38 H 1.08995 * 109.47070 * 310.19463 * 15 14 2 39 39 H 1.09005 * 109.46573 * 289.99883 * 16 14 2 40 40 H 1.09003 * 109.47079 * 49.99047 * 16 14 2 41 41 H 1.07999 * 119.96307 * 359.97078 * 18 17 16 42 42 H 1.08001 * 120.03746 * 180.27087 * 19 18 17 43 43 H 1.08998 * 110.66378 * 278.16062 * 22 21 20 44 44 H 1.09001 * 110.66397 * 41.28303 * 22 21 20 45 45 H 1.09009 * 110.72301 * 204.22956 * 23 22 21 46 46 H 1.09001 * 110.72471 * 80.94433 * 23 22 21 47 47 H 1.08999 * 110.30722 * 263.04553 * 24 23 22 48 48 H 1.08991 * 110.30853 * 140.87152 * 24 23 22 49 49 H 1.08999 * 109.91660 * 333.50801 * 25 21 20 50 50 H 1.08996 * 109.92008 * 94.61082 * 25 21 20 51 51 H 1.08007 * 120.03808 * 180.02562 * 26 20 19 52 52 H 1.07992 * 119.96503 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5688 -0.6693 -1.2797 6 6 4.0664 -1.2717 -2.5683 7 1 3.3625 -1.6538 -3.2930 8 6 5.4200 -1.3351 -2.8223 9 7 5.8542 -1.8613 -3.9466 10 14 6.6375 -0.6750 -1.5686 11 1 7.0154 -1.7592 -0.6269 12 1 7.8508 -0.1822 -2.2688 13 1 6.0140 0.4414 -0.8135 14 7 2.0197 -0.6924 1.1994 15 6 1.7428 0.0920 2.4102 16 6 1.4434 -2.0397 1.3017 17 6 2.1458 -2.8051 2.3933 18 6 3.2637 -3.5626 2.0952 19 6 3.9133 -4.2607 3.0942 20 6 3.4358 -4.2104 4.3977 21 7 4.0866 -4.9202 5.4094 22 6 4.6377 -3.9991 6.4361 23 6 4.8257 -4.9160 7.6707 24 6 3.5962 -5.8504 7.5979 25 6 3.1437 -5.8056 6.1266 26 6 2.3093 -3.4531 4.6926 27 6 1.6681 -2.7525 3.6900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.7122 -1.7605 -1.2280 32 1 1.6422 -0.2327 -2.1387 33 1 3.8986 0.3675 -1.2122 34 1 3.9684 -1.2332 -0.4369 35 1 6.8066 -1.9062 -4.1251 36 1 2.2692 -0.3485 3.2569 37 1 0.6708 0.0893 2.6075 38 1 2.0827 1.1173 2.2645 39 1 0.3817 -1.9638 1.5366 40 1 1.5692 -2.5617 0.3531 41 1 3.6316 -3.6051 1.0807 42 1 4.7889 -4.8486 2.8614 43 1 5.5943 -3.5896 6.1117 44 1 3.9301 -3.1994 6.6549 45 1 4.8121 -4.3316 8.5908 46 1 5.7501 -5.4878 7.5893 47 1 2.8029 -5.4831 8.2490 48 1 3.8759 -6.8661 7.8769 49 1 2.1331 -5.4027 6.0610 50 1 3.1730 -6.8063 5.6955 51 1 1.9357 -3.4115 5.7052 52 1 0.7926 -2.1632 3.9187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172503925.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:25 Heat of formation + Delta-G solvation = 31.429730 kcal Electronic energy + Delta-G solvation = -26951.447364 eV Core-core repulsion = 23529.442296 eV Total energy + Delta-G solvation = -3422.005068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.37196 -38.87770 -37.38968 -33.73687 -32.85188 -31.61360 -30.85653 -29.80894 -29.15045 -28.97903 -26.42601 -25.38852 -23.89485 -22.77063 -22.08404 -21.19503 -20.73457 -20.34232 -19.03392 -17.36101 -16.57968 -16.37554 -16.12809 -15.28702 -14.96763 -14.58430 -14.38801 -14.26334 -14.13024 -13.93775 -13.38437 -13.35320 -13.23887 -12.89486 -12.76733 -12.45855 -12.27169 -12.18361 -12.06638 -11.89658 -11.68396 -11.53532 -11.47278 -11.42919 -11.24199 -11.01717 -10.88813 -10.83659 -10.71388 -10.37953 -9.85791 -9.59208 -9.42525 -8.99854 -8.81846 -8.76678 -8.43456 -8.40448 -7.89011 -5.93571 -3.89938 1.30574 1.50215 3.41721 3.48236 3.55822 3.68887 3.73363 4.36248 4.38159 4.51832 4.57295 4.65397 4.87561 4.98484 5.00161 5.01212 5.19719 5.22446 5.29562 5.38706 5.42461 5.43846 5.46227 5.46632 5.51207 5.54337 5.64385 5.65971 5.69006 5.71382 5.80756 5.84189 5.86669 5.92046 6.04981 6.08831 6.16361 6.20939 6.25204 6.39309 6.48414 6.53665 6.54469 6.69854 6.80461 6.92320 7.08199 7.35188 7.38460 7.43613 7.55270 7.70985 7.94802 8.66152 9.12412 9.70883 11.20148 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.003507 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.162259 B = 7982.342589 C = 9467.114195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.078 3.922 3 H 0.079 0.921 4 C -0.095 4.095 5 C -0.004 4.004 6 C -0.518 4.518 7 H 0.068 0.932 8 C 0.065 3.935 9 N -0.909 5.909 10 Si 0.879 3.121 11 H -0.277 1.277 12 H -0.292 1.292 13 H -0.264 1.264 14 N -0.520 5.520 15 C 0.024 3.976 16 C 0.088 3.912 17 C -0.070 4.070 18 C -0.087 4.087 19 C -0.093 4.093 20 C 0.071 3.929 21 N -0.482 5.482 22 C 0.039 3.961 23 C -0.124 4.124 24 C -0.131 4.131 25 C 0.037 3.963 26 C -0.155 4.155 27 C -0.107 4.107 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.009 0.991 34 H 0.024 0.976 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.020 0.980 38 H 0.063 0.937 39 H 0.039 0.961 40 H 0.094 0.906 41 H 0.135 0.865 42 H 0.128 0.872 43 H 0.084 0.916 44 H 0.049 0.951 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.073 0.927 49 H 0.050 0.950 50 H 0.080 0.920 51 H 0.113 0.887 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.170 -3.727 23.539 25.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.030 4.030 3 H 0.097 0.903 4 C -0.133 4.133 5 C -0.041 4.041 6 C -0.556 4.556 7 H 0.086 0.914 8 C -0.135 4.135 9 N -0.549 5.549 10 Si 0.707 3.293 11 H -0.203 1.203 12 H -0.218 1.218 13 H -0.189 1.189 14 N -0.243 5.243 15 C -0.125 4.125 16 C -0.039 4.039 17 C -0.071 4.071 18 C -0.106 4.106 19 C -0.112 4.112 20 C -0.023 4.023 21 N -0.203 5.203 22 C -0.088 4.088 23 C -0.162 4.162 24 C -0.169 4.169 25 C -0.090 4.090 26 C -0.175 4.175 27 C -0.126 4.126 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.028 0.972 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.038 0.962 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.112 0.888 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.091 0.909 49 H 0.069 0.931 50 H 0.099 0.901 51 H 0.131 0.869 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.083 -4.112 23.145 24.859 hybrid contribution -0.808 0.909 1.016 1.585 sum -8.891 -3.203 24.161 25.944 Atomic orbital electron populations 1.22493 0.98527 1.01794 1.01504 1.21969 0.91488 0.98508 0.91074 0.90301 1.21567 0.99299 0.98776 0.93641 1.19441 0.91064 0.96526 0.97083 1.21259 0.92514 1.39037 1.02768 0.91430 1.25009 0.98476 0.94871 0.95150 1.69928 1.14398 1.46095 1.24454 0.86777 0.80566 0.80168 0.81790 1.20298 1.21838 1.18882 1.62138 1.58527 1.01463 1.02155 1.22416 0.98227 0.98298 0.93538 1.21153 0.94804 0.90007 0.97930 1.19851 0.96077 0.97002 0.94133 1.21206 0.94184 0.95101 1.00084 1.21027 0.99930 0.99226 0.91028 1.18910 0.94041 0.96648 0.92667 1.62395 1.31153 1.17405 1.09386 1.23337 1.00446 0.94320 0.90654 1.22498 0.98759 0.97542 0.97390 1.22411 0.97961 1.00674 0.95894 1.22993 0.94615 0.98291 0.93109 1.21415 0.97558 0.99492 0.99007 1.20845 0.99910 0.99386 0.92457 0.92552 0.93436 0.92095 0.92908 0.92484 0.97236 0.95744 0.92965 0.91654 0.96152 0.91840 0.94297 0.88801 0.84761 0.85447 0.89718 0.93273 0.90965 0.90547 0.91527 0.90862 0.93120 0.90147 0.86894 0.86742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 8.47 37.16 0.31 -2.08 16 2 C 0.08 1.23 2.34 -67.71 -0.16 1.07 16 3 H 0.08 1.28 7.94 -51.93 -0.41 0.87 16 4 C -0.10 -1.85 4.51 -26.73 -0.12 -1.97 16 5 C 0.00 -0.09 3.84 -27.88 -0.11 -0.20 16 6 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 7 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 8 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.91 -28.60 13.96 55.43 0.77 -27.83 16 10 Si 0.88 22.57 27.47 -169.99 -4.67 17.90 16 11 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 13 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 14 N -0.52 -8.06 4.14 -236.34 -0.98 -9.04 16 15 C 0.02 0.31 8.56 60.06 0.51 0.82 16 16 C 0.09 1.26 4.08 -4.98 -0.02 1.24 16 17 C -0.07 -0.99 4.89 -104.59 -0.51 -1.50 16 18 C -0.09 -1.31 9.69 -39.61 -0.38 -1.70 16 19 C -0.09 -1.33 9.97 -39.38 -0.39 -1.72 16 20 C 0.07 0.92 4.86 -83.79 -0.41 0.51 16 21 N -0.48 -5.52 5.28 -167.16 -0.88 -6.40 16 22 C 0.04 0.38 6.43 -1.90 -0.01 0.36 16 23 C -0.12 -0.93 7.06 -24.87 -0.18 -1.11 16 24 C -0.13 -0.95 6.93 -25.37 -0.18 -1.13 16 25 C 0.04 0.34 6.48 -2.75 -0.02 0.33 16 26 C -0.15 -1.83 7.90 -39.38 -0.31 -2.15 16 27 C -0.11 -1.31 8.11 -39.61 -0.32 -1.63 16 28 H 0.06 0.72 6.56 -51.93 -0.34 0.38 16 29 H 0.05 0.56 6.90 -51.93 -0.36 0.20 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 1.02 6.25 -51.93 -0.32 0.69 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.01 0.23 7.20 -51.93 -0.37 -0.14 16 34 H 0.02 0.60 7.25 -51.93 -0.38 0.22 16 35 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 36 H 0.06 0.85 6.58 -51.93 -0.34 0.51 16 37 H 0.02 0.23 6.99 -51.93 -0.36 -0.13 16 38 H 0.06 0.81 7.93 -51.93 -0.41 0.39 16 39 H 0.04 0.50 6.70 -51.93 -0.35 0.15 16 40 H 0.09 1.48 5.96 -51.93 -0.31 1.17 16 41 H 0.13 2.19 8.06 -52.49 -0.42 1.76 16 42 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.48 7.03 -51.93 -0.37 0.11 16 45 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.05 0.48 6.30 -51.93 -0.33 0.15 16 50 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 51 H 0.11 1.15 7.04 -52.48 -0.37 0.79 16 52 H 0.11 1.22 8.03 -52.49 -0.42 0.80 16 LS Contribution 393.06 15.07 5.92 5.92 Total: -1.00 -31.45 393.06 -11.81 -43.26 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -9.26 Total: 0.44 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -2.72 Total: -24.26 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: -1.09 Total: -43.26 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.67 Total: 17.90 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.45 -11.81 -43.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503925.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.689 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds