Wall clock time and date at job start Tue Mar 31 2020 11:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.47139 * 2 1 4 4 C 1.53000 * 109.47041 * 240.00044 * 2 1 3 5 5 C 1.53001 * 109.46911 * 177.61000 * 4 2 1 6 6 C 1.50699 * 109.47196 * 184.95178 * 5 4 2 7 7 H 1.08009 * 119.99850 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00414 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00325 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99916 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47420 * 89.99698 * 10 8 6 12 12 H 1.48500 * 109.47281 * 209.99754 * 10 8 6 13 13 H 1.48500 * 109.47193 * 329.99752 * 10 8 6 14 14 N 1.46896 * 109.47275 * 119.99556 * 2 1 3 15 15 C 1.46899 * 111.00502 * 290.48556 * 14 2 1 16 16 C 1.46900 * 111.00087 * 54.44564 * 14 2 1 17 17 C 1.50692 * 109.47749 * 169.99875 * 16 14 2 18 18 C 1.38290 * 119.92396 * 269.72872 * 17 16 14 19 19 C 1.38106 * 120.07516 * 179.72196 * 18 17 16 20 20 C 1.38913 * 119.92193 * 0.54279 * 19 18 17 21 21 N 1.39672 * 120.07288 * 179.70142 * 20 19 18 22 22 C 1.48537 * 110.99892 * 116.77528 * 21 20 19 23 23 C 1.54932 * 103.22779 * 159.72230 * 22 21 20 24 24 C 1.54598 * 102.92378 * 322.58449 * 23 22 21 25 25 C 1.47898 * 111.00183 * 234.17054 * 21 20 19 26 26 C 1.38908 * 119.84988 * 359.72876 * 20 19 18 27 27 C 1.38104 * 119.93042 * 359.97438 * 26 20 19 28 28 H 1.08998 * 109.46477 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47210 * 299.99993 * 1 2 3 30 30 H 1.08994 * 109.47036 * 60.00122 * 1 2 3 31 31 H 1.08995 * 109.47087 * 297.60543 * 4 2 1 32 32 H 1.08999 * 109.47223 * 57.61316 * 4 2 1 33 33 H 1.09007 * 109.47145 * 304.94712 * 5 4 2 34 34 H 1.08993 * 109.47455 * 64.94728 * 5 4 2 35 35 H 0.97002 * 120.00186 * 180.02562 * 9 8 6 36 36 H 1.08995 * 109.47287 * 190.18736 * 15 14 2 37 37 H 1.08999 * 109.46728 * 70.19081 * 15 14 2 38 38 H 1.08995 * 109.47070 * 310.19463 * 15 14 2 39 39 H 1.09005 * 109.46573 * 289.99883 * 16 14 2 40 40 H 1.09003 * 109.47079 * 49.99047 * 16 14 2 41 41 H 1.07999 * 119.96307 * 359.97078 * 18 17 16 42 42 H 1.08001 * 120.03746 * 180.27087 * 19 18 17 43 43 H 1.08998 * 110.66378 * 278.16062 * 22 21 20 44 44 H 1.09001 * 110.66397 * 41.28303 * 22 21 20 45 45 H 1.09009 * 110.72301 * 204.22956 * 23 22 21 46 46 H 1.09001 * 110.72471 * 80.94433 * 23 22 21 47 47 H 1.08999 * 110.30722 * 263.04553 * 24 23 22 48 48 H 1.08991 * 110.30853 * 140.87152 * 24 23 22 49 49 H 1.08999 * 109.91660 * 333.50801 * 25 21 20 50 50 H 1.08996 * 109.92008 * 94.61082 * 25 21 20 51 51 H 1.08007 * 120.03808 * 180.02562 * 26 20 19 52 52 H 1.07992 * 119.96503 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5688 -0.6693 -1.2797 6 6 4.0664 -1.2717 -2.5683 7 1 3.3625 -1.6538 -3.2930 8 6 5.4200 -1.3351 -2.8223 9 7 5.8542 -1.8613 -3.9466 10 14 6.6375 -0.6750 -1.5686 11 1 7.0154 -1.7592 -0.6269 12 1 7.8508 -0.1822 -2.2688 13 1 6.0140 0.4414 -0.8135 14 7 2.0197 -0.6924 1.1994 15 6 1.7428 0.0920 2.4102 16 6 1.4434 -2.0397 1.3017 17 6 2.1458 -2.8051 2.3933 18 6 3.2637 -3.5626 2.0952 19 6 3.9133 -4.2607 3.0942 20 6 3.4358 -4.2104 4.3977 21 7 4.0866 -4.9202 5.4094 22 6 4.6377 -3.9991 6.4361 23 6 4.8257 -4.9160 7.6707 24 6 3.5962 -5.8504 7.5979 25 6 3.1437 -5.8056 6.1266 26 6 2.3093 -3.4531 4.6926 27 6 1.6681 -2.7525 3.6900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.7122 -1.7605 -1.2280 32 1 1.6422 -0.2327 -2.1387 33 1 3.8986 0.3675 -1.2122 34 1 3.9684 -1.2332 -0.4369 35 1 6.8066 -1.9062 -4.1251 36 1 2.2692 -0.3485 3.2569 37 1 0.6708 0.0893 2.6075 38 1 2.0827 1.1173 2.2645 39 1 0.3817 -1.9638 1.5366 40 1 1.5692 -2.5617 0.3531 41 1 3.6316 -3.6051 1.0807 42 1 4.7889 -4.8486 2.8614 43 1 5.5943 -3.5896 6.1117 44 1 3.9301 -3.1994 6.6549 45 1 4.8121 -4.3316 8.5908 46 1 5.7501 -5.4878 7.5893 47 1 2.8029 -5.4831 8.2490 48 1 3.8759 -6.8661 7.8769 49 1 2.1331 -5.4027 6.0610 50 1 3.1730 -6.8063 5.6955 51 1 1.9357 -3.4115 5.7052 52 1 0.7926 -2.1632 3.9187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172503925.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:24 Heat of formation + Delta-G solvation = 13.613317 kcal Electronic energy + Delta-G solvation = -26952.219942 eV Core-core repulsion = 23529.442296 eV Total energy + Delta-G solvation = -3422.777646 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.29410 -39.93942 -38.40497 -35.50836 -34.16247 -33.15020 -31.90015 -31.14175 -30.12352 -29.83415 -27.55568 -26.95287 -25.10831 -23.79003 -23.06476 -22.51411 -21.82169 -21.35880 -20.33812 -18.80138 -18.23931 -17.36418 -17.06236 -16.37350 -16.21906 -16.12567 -15.65586 -15.34812 -15.06980 -14.90053 -14.81654 -14.41281 -14.31937 -14.27616 -14.09595 -13.67964 -13.47991 -13.42550 -13.08777 -13.05146 -12.91470 -12.80093 -12.57000 -12.34160 -12.25252 -12.11888 -12.01456 -11.93010 -11.87656 -11.75001 -11.47051 -11.43892 -11.27911 -11.04679 -10.72067 -9.85727 -9.61917 -9.41613 -9.00156 -8.26639 -6.27935 0.28238 0.46872 1.36083 1.36709 1.50464 2.38265 2.65115 2.91906 3.10159 3.27193 3.69683 3.87749 3.88652 3.91572 4.00063 4.03566 4.07353 4.27251 4.31371 4.35266 4.36758 4.46760 4.53256 4.55450 4.58539 4.68060 4.71965 4.75497 4.80758 4.88340 4.89222 4.95036 4.95638 4.97161 5.02681 5.05760 5.10022 5.12780 5.16134 5.24639 5.27388 5.35424 5.39395 5.50457 5.60432 5.70969 5.74177 5.75746 5.80877 5.89337 6.25105 6.32479 6.35095 6.44635 6.80864 7.36616 8.90458 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.003507 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.162259 B = 7982.342589 C = 9467.114195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.086 3.914 3 H 0.078 0.922 4 C -0.090 4.090 5 C 0.007 3.993 6 C -0.526 4.526 7 H 0.030 0.970 8 C 0.006 3.994 9 N -0.954 5.954 10 Si 0.947 3.053 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.250 1.250 14 N -0.544 5.544 15 C 0.027 3.973 16 C 0.095 3.905 17 C -0.079 4.079 18 C -0.107 4.107 19 C -0.110 4.110 20 C 0.074 3.926 21 N -0.500 5.500 22 C 0.035 3.965 23 C -0.118 4.118 24 C -0.125 4.125 25 C 0.033 3.967 26 C -0.148 4.148 27 C -0.098 4.098 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.007 0.993 34 H 0.020 0.980 35 H 0.264 0.736 36 H 0.064 0.936 37 H 0.042 0.958 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.120 0.880 43 H 0.074 0.926 44 H 0.053 0.947 45 H 0.091 0.909 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.053 0.947 50 H 0.074 0.926 51 H 0.137 0.863 52 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.483 -2.628 27.438 29.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.022 4.022 3 H 0.096 0.904 4 C -0.127 4.127 5 C -0.031 4.031 6 C -0.564 4.564 7 H 0.048 0.952 8 C -0.190 4.190 9 N -0.596 5.596 10 Si 0.771 3.229 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.174 1.174 14 N -0.268 5.268 15 C -0.121 4.121 16 C -0.032 4.032 17 C -0.079 4.079 18 C -0.127 4.127 19 C -0.129 4.129 20 C -0.020 4.020 21 N -0.222 5.222 22 C -0.091 4.091 23 C -0.156 4.156 24 C -0.163 4.163 25 C -0.093 4.093 26 C -0.168 4.168 27 C -0.117 4.117 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.025 0.975 34 H 0.039 0.961 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.126 0.874 42 H 0.138 0.862 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.109 0.891 46 H 0.092 0.908 47 H 0.100 0.900 48 H 0.100 0.900 49 H 0.071 0.929 50 H 0.093 0.907 51 H 0.155 0.845 52 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.412 -3.010 27.056 28.804 hybrid contribution -0.413 0.485 -0.247 0.683 sum -9.825 -2.525 26.809 28.664 Atomic orbital electron populations 1.22373 0.95856 1.02339 1.02774 1.21750 0.93522 0.97543 0.89427 0.90401 1.21441 0.96083 0.99287 0.95928 1.19299 0.94296 0.95376 0.94113 1.21642 0.92180 1.38654 1.03932 0.95163 1.25925 1.00667 0.95270 0.97177 1.70072 1.15050 1.47819 1.26645 0.85697 0.78027 0.79935 0.79195 1.19691 1.21091 1.17387 1.62049 1.59605 1.02166 1.02964 1.22413 0.99625 0.97885 0.92141 1.21050 0.95915 0.89347 0.96932 1.19861 0.95857 0.97132 0.95099 1.21084 0.95559 0.96855 0.99165 1.21037 1.00155 0.99793 0.91955 1.19009 0.94212 0.96436 0.92367 1.62368 1.31876 1.18009 1.09978 1.23392 0.99902 0.94667 0.91114 1.22493 0.98811 0.97284 0.97029 1.22408 0.98184 1.01276 0.94449 1.23061 0.94369 0.97501 0.94360 1.21650 0.96724 0.98379 1.00044 1.21050 1.00251 0.98997 0.91388 0.92357 0.91271 0.91709 0.93341 0.93103 0.97513 0.96137 0.92715 0.91681 0.93974 0.91598 0.92183 0.91272 0.87420 0.86223 0.90777 0.92857 0.89055 0.90839 0.89954 0.89965 0.92877 0.90721 0.84511 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.47 71.98 0.61 -3.45 16 2 C 0.09 2.58 2.34 44.92 0.11 2.69 16 3 H 0.08 2.37 7.94 -2.38 -0.02 2.35 16 4 C -0.09 -3.53 4.51 30.59 0.14 -3.39 16 5 C 0.01 0.32 3.84 29.85 0.11 0.44 16 6 C -0.53 -31.50 9.66 25.60 0.25 -31.25 16 7 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 8 C 0.01 0.35 5.47 84.65 0.46 0.81 16 9 N -0.95 -62.03 13.96 21.44 0.30 -61.73 16 10 Si 0.95 47.32 27.47 68.60 1.88 49.20 16 11 H -0.27 -13.24 7.11 99.48 0.71 -12.54 16 12 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 13 H -0.25 -11.84 6.54 99.48 0.65 -11.18 16 14 N -0.54 -15.99 4.14 -901.63 -3.73 -19.72 16 15 C 0.03 0.62 8.56 127.69 1.09 1.71 16 16 C 0.09 2.61 4.08 85.55 0.35 2.96 16 17 C -0.08 -2.16 4.89 -19.84 -0.10 -2.26 16 18 C -0.11 -3.38 9.69 22.25 0.22 -3.17 16 19 C -0.11 -3.23 9.97 22.40 0.22 -3.01 16 20 C 0.07 1.83 4.86 38.21 0.19 2.02 16 21 N -0.50 -10.86 5.28 -682.79 -3.60 -14.47 16 22 C 0.04 0.62 6.43 86.65 0.56 1.18 16 23 C -0.12 -1.48 7.06 31.80 0.22 -1.25 16 24 C -0.13 -1.45 6.93 31.48 0.22 -1.24 16 25 C 0.03 0.56 6.48 86.45 0.56 1.12 16 26 C -0.15 -3.14 7.90 22.40 0.18 -2.96 16 27 C -0.10 -2.14 8.11 22.25 0.18 -1.96 16 28 H 0.06 1.34 6.56 -2.39 -0.02 1.32 16 29 H 0.07 1.34 6.90 -2.39 -0.02 1.32 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.93 6.25 -2.39 -0.01 1.91 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.01 0.32 7.20 -2.38 -0.02 0.31 16 34 H 0.02 1.01 7.25 -2.39 -0.02 1.00 16 35 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 36 H 0.06 1.49 6.58 -2.39 -0.02 1.48 16 37 H 0.04 0.78 6.99 -2.39 -0.02 0.77 16 38 H 0.07 1.47 7.93 -2.39 -0.02 1.45 16 39 H 0.06 1.38 6.70 -2.38 -0.02 1.37 16 40 H 0.07 2.23 5.96 -2.39 -0.01 2.21 16 41 H 0.11 3.85 8.06 -2.91 -0.02 3.82 16 42 H 0.12 3.52 8.06 -2.91 -0.02 3.50 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.05 0.90 7.03 -2.39 -0.02 0.88 16 45 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.05 0.86 6.30 -2.39 -0.02 0.85 16 50 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.14 2.26 7.04 -2.91 -0.02 2.24 16 52 H 0.14 2.36 8.03 -2.91 -0.02 2.34 16 Total: -1.00 -70.02 393.06 1.23 -68.80 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.81 Total: 18.91 kcal Atomic # 6 Polarization: -46.56 SS G_CDS: 5.57 Total: -41.00 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -7.03 Total: -95.91 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 1.88 Total: 49.20 kcal Total: -70.02 1.23 -68.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503925.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.409 kcal (2) G-P(sol) polarization free energy of solvation -70.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds