Wall clock time and date at job start Tue Mar 31 2020 11:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46772 * 2 1 4 4 C 1.52997 * 109.46933 * 120.00387 * 2 1 3 5 5 C 1.53000 * 109.47294 * 297.28134 * 4 2 1 6 6 C 1.50695 * 109.47428 * 185.60005 * 5 4 2 7 7 H 1.08001 * 120.00085 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00377 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99739 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00338 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47124 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47272 * 120.00016 * 10 8 6 13 13 H 1.48503 * 109.47168 * 240.00197 * 10 8 6 14 14 N 1.46899 * 109.46855 * 240.00384 * 2 1 3 15 15 C 1.46959 * 110.99807 * 186.45457 * 14 2 1 16 16 C 1.53050 * 109.36627 * 176.81246 * 15 14 2 17 17 N 1.46953 * 109.36590 * 58.40023 * 16 15 14 18 18 C 1.46894 * 110.99968 * 176.81387 * 17 16 15 19 19 C 1.53001 * 109.47350 * 313.79835 * 18 17 16 20 20 C 1.50698 * 109.47531 * 180.02562 * 19 18 17 21 21 C 1.38231 * 119.99747 * 269.73252 * 20 19 18 22 22 C 1.38240 * 120.00093 * 179.76469 * 21 20 19 23 23 C 1.38242 * 119.99676 * 0.50289 * 22 21 20 24 24 C 1.38240 * 119.99840 * 359.74575 * 23 22 21 25 25 C 1.38230 * 120.00285 * 89.99684 * 20 19 18 26 26 C 1.46959 * 110.87956 * 300.68206 * 17 16 15 27 27 C 1.46953 * 111.00276 * 62.65553 * 14 2 1 28 28 H 1.09004 * 109.46948 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47195 * 299.99435 * 1 2 3 30 30 H 1.09000 * 109.47351 * 59.99703 * 1 2 3 31 31 H 1.08996 * 109.47520 * 57.28275 * 4 2 1 32 32 H 1.09005 * 109.46834 * 177.28238 * 4 2 1 33 33 H 1.09008 * 109.47360 * 305.59998 * 5 4 2 34 34 H 1.09001 * 109.47067 * 65.59747 * 5 4 2 35 35 H 0.97001 * 119.99604 * 179.97438 * 9 8 6 36 36 H 1.09005 * 109.48761 * 296.77917 * 15 14 2 37 37 H 1.09000 * 109.48614 * 56.84079 * 15 14 2 38 38 H 1.09002 * 109.48506 * 298.43029 * 16 15 14 39 39 H 1.08995 * 109.48790 * 178.37394 * 16 15 14 40 40 H 1.09003 * 109.47601 * 73.79963 * 18 17 16 41 41 H 1.08998 * 109.47296 * 193.79870 * 18 17 16 42 42 H 1.09000 * 109.46598 * 300.00126 * 19 18 17 43 43 H 1.08998 * 109.46892 * 59.99788 * 19 18 17 44 44 H 1.07997 * 120.00359 * 359.97438 * 21 20 19 45 45 H 1.08000 * 120.00628 * 180.22375 * 22 21 20 46 46 H 1.07999 * 119.99875 * 179.72603 * 23 22 21 47 47 H 1.07994 * 119.99625 * 179.97438 * 24 23 22 48 48 H 1.08002 * 120.00096 * 0.02562 * 25 20 19 49 49 H 1.09005 * 109.48761 * 299.35145 * 26 17 16 50 50 H 1.09000 * 109.49112 * 179.28814 * 26 17 16 51 51 H 1.09000 * 109.48538 * 303.15333 * 27 14 2 52 52 H 1.09003 * 109.48732 * 63.19618 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5866 0.0382 2.4975 6 6 2.2019 -0.5921 3.7203 7 1 2.8511 -1.4490 3.6173 8 6 1.9362 -0.0748 4.9704 9 7 1.1461 0.9691 5.0957 10 14 2.6984 -0.8566 6.4860 11 1 3.5423 -2.0082 6.0777 12 1 3.5371 0.1457 7.1913 13 1 1.6221 -1.3283 7.3940 14 7 2.0196 -0.6924 -1.1995 15 6 3.4805 -0.8471 -1.1589 16 6 3.9411 -1.6407 -2.3838 17 7 3.5225 -0.9386 -3.6050 18 6 4.0122 -1.6310 -4.8044 19 6 5.4865 -1.9947 -4.6172 20 6 5.9890 -2.7045 -5.8479 21 6 5.9049 -4.0816 -5.9343 22 6 6.3614 -4.7324 -7.0653 23 6 6.9116 -4.0069 -8.1054 24 6 7.0004 -2.6302 -8.0168 25 6 6.5391 -1.9791 -6.8880 26 6 2.0617 -0.7840 -3.6456 27 6 1.6011 0.0097 -2.4207 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6375 -1.7339 1.2739 32 1 3.1290 -0.7637 1.2251 33 1 1.9050 1.0783 2.4257 34 1 0.5002 -0.0047 2.5744 35 1 0.9588 1.3328 5.9752 36 1 3.9506 0.1364 -1.1649 37 1 3.7646 -1.3806 -0.2518 38 1 3.4924 -2.6339 -2.3633 39 1 5.0272 -1.7318 -2.3707 40 1 3.4310 -2.5396 -4.9622 41 1 3.9064 -0.9772 -5.6700 42 1 6.0676 -1.0861 -4.4595 43 1 5.5923 -2.6486 -3.7515 44 1 5.4794 -4.6488 -5.1197 45 1 6.2923 -5.8080 -7.1344 46 1 7.2723 -4.5157 -8.9871 47 1 7.4306 -2.0635 -8.8292 48 1 6.6092 -0.9036 -6.8186 49 1 1.5916 -1.7674 -3.6395 50 1 1.7775 -0.2503 -4.5526 51 1 0.5149 0.1007 -2.4336 52 1 2.0495 1.0030 -2.4409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507130.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:39 Heat of formation + Delta-G solvation = 21.306159 kcal Electronic energy + Delta-G solvation = -25976.189763 eV Core-core repulsion = 22553.745704 eV Total energy + Delta-G solvation = -3422.444059 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.87559 -39.22545 -36.83704 -34.16483 -33.00490 -31.61875 -31.19506 -31.06006 -29.22345 -28.01298 -26.09815 -25.01452 -23.26322 -22.86991 -22.83108 -21.64364 -20.76241 -19.77150 -19.13519 -17.16008 -16.68263 -16.08806 -15.75534 -15.42807 -14.95503 -14.81948 -14.69139 -14.56832 -14.24681 -14.17038 -13.94297 -13.67787 -13.21367 -13.05789 -12.90461 -12.55622 -12.28737 -12.10310 -12.05871 -11.63550 -11.59432 -11.31437 -11.28288 -11.14670 -11.06672 -11.00207 -10.88912 -10.73392 -10.56305 -10.38985 -10.00079 -9.56757 -9.27366 -9.23079 -8.98647 -8.96630 -8.42869 -8.31325 -7.97366 -5.97516 -3.99117 1.03970 1.09254 3.32323 3.39791 3.44058 3.44912 3.78282 4.15610 4.48640 4.51703 4.56947 4.69368 4.81148 4.84535 4.89979 4.95923 5.14629 5.21442 5.24526 5.31104 5.34552 5.38343 5.42215 5.45743 5.57761 5.59554 5.62036 5.70531 5.74054 5.79197 5.82065 5.89926 5.98508 6.00580 6.11231 6.14996 6.16983 6.20674 6.35010 6.36450 6.44733 6.66652 6.69795 6.75683 6.80984 6.95155 6.96322 7.15637 7.44290 7.51334 7.72025 7.87868 8.03320 8.47024 9.08282 9.64625 11.13843 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020846 B = 0.002082 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.879252 B =13442.908897 C =14387.372001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.082 3.918 3 H 0.035 0.965 4 C -0.104 4.104 5 C 0.022 3.978 6 C -0.517 4.517 7 H 0.054 0.946 8 C 0.055 3.945 9 N -0.896 5.896 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 N -0.536 5.536 15 C 0.052 3.948 16 C 0.053 3.947 17 N -0.540 5.540 18 C 0.064 3.936 19 C -0.086 4.086 20 C -0.078 4.078 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.127 4.127 24 C -0.120 4.120 25 C -0.116 4.116 26 C 0.061 3.939 27 C 0.054 3.946 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.013 0.987 34 H 0.020 0.980 35 H 0.259 0.741 36 H 0.038 0.962 37 H 0.090 0.910 38 H 0.040 0.960 39 H 0.081 0.919 40 H 0.034 0.966 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.041 0.959 50 H 0.074 0.926 51 H 0.080 0.920 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.031 -6.856 -26.927 28.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 H 0.053 0.947 4 C -0.142 4.142 5 C -0.015 4.015 6 C -0.555 4.555 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.718 3.282 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.211 1.211 14 N -0.262 5.262 15 C -0.076 4.076 16 C -0.075 4.075 17 N -0.265 5.265 18 C -0.063 4.063 19 C -0.124 4.124 20 C -0.078 4.078 21 C -0.135 4.135 22 C -0.137 4.137 23 C -0.145 4.145 24 C -0.138 4.138 25 C -0.134 4.134 26 C -0.068 4.068 27 C -0.074 4.074 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.031 0.969 34 H 0.038 0.962 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.108 0.892 38 H 0.059 0.941 39 H 0.099 0.901 40 H 0.052 0.948 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.140 0.860 49 H 0.059 0.941 50 H 0.092 0.908 51 H 0.099 0.901 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.943 -6.735 -26.790 28.743 hybrid contribution 0.387 -0.353 0.836 0.986 sum 8.330 -7.088 -25.954 28.165 Atomic orbital electron populations 1.21866 0.94720 1.02027 1.01180 1.21772 0.95531 0.95550 0.89673 0.94652 1.21775 0.99435 0.99454 0.93546 1.19132 0.96780 0.95122 0.90484 1.21298 1.28640 1.14139 0.91463 0.92732 1.25024 0.95342 0.95080 0.99096 1.69978 1.36892 1.23343 1.23325 0.86562 0.79102 0.79313 0.83182 1.19763 1.21087 1.21052 1.62257 1.11124 1.50759 1.02043 1.22232 0.88123 0.99488 0.97736 1.22307 1.00144 0.95889 0.89172 1.62258 1.12047 1.50242 1.01982 1.22051 0.94044 0.96919 0.93329 1.20789 0.95943 1.00655 0.94991 1.19896 0.98243 0.93724 0.95963 1.21101 1.00094 0.94041 0.98250 1.21160 0.98786 0.99891 0.93873 1.21154 1.00161 0.94344 0.98878 1.21158 0.99934 0.94673 0.97997 1.21101 0.98831 0.99946 0.93492 1.22141 0.86944 0.99568 0.98105 1.22162 1.00375 0.95508 0.89398 0.92357 0.91147 0.93957 0.92758 0.93184 0.96897 0.96192 0.93138 0.94323 0.89217 0.94122 0.90081 0.94800 0.90762 0.89970 0.90405 0.86131 0.86153 0.86274 0.86156 0.85971 0.94106 0.90794 0.90146 0.94433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.75 37.16 0.33 -2.01 16 2 C 0.08 1.45 2.17 -67.71 -0.15 1.31 16 3 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 4 C -0.10 -2.18 4.30 -26.73 -0.12 -2.29 16 5 C 0.02 0.58 4.53 -27.89 -0.13 0.45 16 6 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 7 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 10 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 N -0.54 -8.26 4.58 -226.49 -1.04 -9.30 16 15 C 0.05 0.76 5.16 -3.77 -0.02 0.74 16 16 C 0.05 0.63 4.93 -3.77 -0.02 0.61 16 17 N -0.54 -6.14 4.86 -234.47 -1.14 -7.28 16 18 C 0.06 0.61 5.26 -3.83 -0.02 0.59 16 19 C -0.09 -0.74 4.61 -27.88 -0.13 -0.87 16 20 C -0.08 -0.67 5.13 -104.63 -0.54 -1.21 16 21 C -0.12 -0.98 9.70 -39.58 -0.38 -1.36 16 22 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 23 C -0.13 -0.93 10.05 -39.58 -0.40 -1.33 16 24 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 25 C -0.12 -0.94 9.70 -39.59 -0.38 -1.32 16 26 C 0.06 0.69 5.58 -3.77 -0.02 0.67 16 27 C 0.05 0.71 5.37 -3.77 -0.02 0.69 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.29 6.63 -51.93 -0.34 0.94 16 30 H 0.04 0.60 6.39 -51.93 -0.33 0.27 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.05 1.03 6.09 -51.93 -0.32 0.72 16 33 H 0.01 0.35 8.14 -51.92 -0.42 -0.07 16 34 H 0.02 0.54 6.79 -51.93 -0.35 0.19 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 1.38 5.96 -51.93 -0.31 1.07 16 38 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.86 5.99 -51.93 -0.31 0.55 16 40 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 43 H 0.08 0.67 6.20 -51.93 -0.32 0.35 16 44 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 46 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 47 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 48 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 49 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.08 1.01 6.22 -51.93 -0.32 0.69 16 52 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 397.68 15.07 5.99 5.99 Total: -1.00 -30.54 397.68 -13.00 -43.54 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -9.33 Total: -1.98 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -3.20 Total: -21.48 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: -1.44 Total: -42.89 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.54 -13.00 -43.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507130.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.851 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds