Wall clock time and date at job start Tue Mar 31 2020 11:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 C 1.53001 * 109.47049 * 174.99763 * 4 2 1 6 6 C 1.50703 * 109.47033 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00117 * 0.02562 * 6 5 4 8 8 C 1.37870 * 119.99962 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00182 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00189 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46709 * 90.00129 * 10 8 6 12 12 H 1.48499 * 109.47362 * 210.00066 * 10 8 6 13 13 H 1.48507 * 109.46984 * 330.00534 * 10 8 6 14 14 N 1.46899 * 109.47163 * 120.00236 * 2 1 3 15 15 C 1.46948 * 111.00033 * 58.80189 * 14 2 1 16 16 C 1.53056 * 109.36577 * 176.81074 * 15 14 2 17 17 N 1.46962 * 109.36062 * 58.39971 * 16 15 14 18 18 C 1.46899 * 110.99727 * 176.81204 * 17 16 15 19 19 C 1.52996 * 109.47288 * 293.80283 * 18 17 16 20 20 C 1.50701 * 109.47307 * 179.97438 * 19 18 17 21 21 C 1.38236 * 120.00046 * 269.72262 * 20 19 18 22 22 C 1.38232 * 119.99954 * 179.76506 * 21 20 19 23 23 C 1.38240 * 120.00086 * 0.50761 * 22 21 20 24 24 C 1.38238 * 119.99847 * 359.74816 * 23 22 21 25 25 C 1.38231 * 119.99956 * 89.99620 * 20 19 18 26 26 C 1.46948 * 110.87941 * 300.68191 * 17 16 15 27 27 C 1.46962 * 110.99727 * 295.00082 * 14 2 1 28 28 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 29 29 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46934 * 294.99762 * 4 2 1 32 32 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 33 33 H 1.08998 * 109.47252 * 299.99805 * 5 4 2 34 34 H 1.08998 * 109.47250 * 59.99881 * 5 4 2 35 35 H 0.97002 * 120.00223 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.49218 * 296.77655 * 15 14 2 37 37 H 1.08998 * 109.49241 * 56.84045 * 15 14 2 38 38 H 1.08994 * 109.48673 * 298.43564 * 16 15 14 39 39 H 1.08999 * 109.48552 * 178.36506 * 16 15 14 40 40 H 1.09008 * 109.47232 * 53.79853 * 18 17 16 41 41 H 1.08996 * 109.47232 * 173.80081 * 18 17 16 42 42 H 1.09006 * 109.47150 * 299.99963 * 19 18 17 43 43 H 1.09000 * 109.47830 * 59.99524 * 19 18 17 44 44 H 1.08003 * 119.99965 * 0.02562 * 21 20 19 45 45 H 1.08003 * 119.99986 * 180.23533 * 22 21 20 46 46 H 1.07993 * 120.00310 * 179.72576 * 23 22 21 47 47 H 1.07993 * 120.00059 * 179.97438 * 24 23 22 48 48 H 1.08003 * 120.00315 * 0.02562 * 25 20 19 49 49 H 1.09003 * 109.49245 * 299.34953 * 26 17 16 50 50 H 1.08998 * 109.48890 * 179.29317 * 26 17 16 51 51 H 1.09000 * 109.48631 * 303.15232 * 27 14 2 52 52 H 1.08993 * 109.48843 * 63.20545 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5649 -0.6131 -1.3137 6 6 4.0673 -1.3240 -2.5439 7 1 3.3688 -1.8044 -3.2131 8 6 5.4184 -1.3602 -2.8157 9 7 6.2690 -0.7748 -2.0011 10 14 6.0413 -2.2419 -4.3402 11 1 6.0906 -1.2887 -5.4778 12 1 7.4030 -2.7753 -4.0820 13 1 5.1254 -3.3626 -4.6727 14 7 2.0197 -0.6925 1.1994 15 6 1.5253 -2.0755 1.2477 16 6 2.1203 -2.7849 2.4665 17 7 1.7491 -2.0530 3.6856 18 6 2.2388 -2.7455 4.8850 19 6 1.5131 -4.0842 5.0329 20 6 2.0159 -4.7950 6.2630 21 6 3.0919 -5.6580 6.1714 22 6 3.5562 -6.3062 7.3006 23 6 2.9378 -6.0995 8.5196 24 6 1.8585 -5.2406 8.6103 25 6 1.3976 -4.5883 7.4819 26 6 2.2436 -0.6700 3.6372 27 6 1.6486 0.0394 2.4185 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -1.7714 -1.2056 32 1 1.6054 -0.2616 -2.1370 33 1 3.8532 0.4371 -1.3574 34 1 3.9995 -1.0726 -0.4260 35 1 7.2196 -0.8005 -2.1921 36 1 0.4380 -2.0705 1.3248 37 1 1.8234 -2.6002 0.3401 38 1 3.2061 -2.8139 2.3761 39 1 1.7322 -3.8020 2.5205 40 1 3.3104 -2.9217 4.7908 41 1 2.0477 -2.1296 5.7637 42 1 0.4415 -3.9082 5.1271 43 1 1.7041 -4.7003 4.1542 44 1 3.5725 -5.8225 5.2183 45 1 4.3992 -6.9775 7.2297 46 1 3.2977 -6.6093 9.4010 47 1 1.3751 -5.0794 9.5624 48 1 0.5538 -3.9178 7.5527 49 1 3.3309 -0.6750 3.5602 50 1 1.9455 -0.1453 4.5448 51 1 2.0367 1.0565 2.3644 52 1 0.5628 0.0687 2.5087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507131.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:41 Heat of formation + Delta-G solvation = 20.827877 kcal Electronic energy + Delta-G solvation = -26428.668718 eV Core-core repulsion = 23006.203919 eV Total energy + Delta-G solvation = -3422.464799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.74909 -39.21170 -36.75523 -33.91846 -32.94279 -31.40691 -31.09965 -30.69425 -29.32895 -28.21570 -25.71822 -24.89310 -23.59088 -22.77507 -22.65819 -21.38617 -20.77467 -20.01925 -18.69929 -17.03787 -16.33660 -16.08868 -15.64805 -15.37185 -15.00198 -14.80527 -14.51061 -14.42045 -14.31217 -14.00435 -13.64189 -13.31557 -13.12599 -13.05529 -12.97609 -12.63667 -12.23904 -12.03796 -11.73338 -11.68740 -11.52475 -11.41121 -11.30871 -11.15416 -11.07190 -10.88088 -10.82549 -10.60205 -10.43335 -10.31648 -10.01117 -9.57389 -9.18715 -9.13778 -8.90526 -8.87546 -8.29632 -8.23717 -7.70867 -5.88858 -3.90353 1.13496 1.18497 3.36394 3.42625 3.45762 3.54243 3.92471 4.29703 4.53414 4.62034 4.68930 4.79370 4.90430 4.95305 5.06965 5.10907 5.26815 5.30999 5.34386 5.44645 5.46458 5.47167 5.52147 5.58473 5.60350 5.64632 5.72076 5.75150 5.75914 5.81368 5.87633 5.95099 6.02415 6.11936 6.15771 6.22811 6.25770 6.29727 6.30057 6.36349 6.44912 6.46653 6.68655 6.79606 6.90256 7.08159 7.10784 7.29452 7.57991 7.62783 7.84911 8.06833 8.21667 8.56678 9.18785 9.72419 11.22040 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013312 B = 0.002655 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.784439 B =10542.950190 C =12051.613824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.082 3.918 3 H 0.077 0.923 4 C -0.104 4.104 5 C 0.030 3.970 6 C -0.519 4.519 7 H 0.051 0.949 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 N -0.520 5.520 15 C 0.055 3.945 16 C 0.054 3.946 17 N -0.540 5.540 18 C 0.063 3.937 19 C -0.079 4.079 20 C -0.077 4.077 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.121 4.121 25 C -0.117 4.117 26 C 0.059 3.941 27 C 0.057 3.943 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.009 0.991 34 H 0.030 0.970 35 H 0.258 0.742 36 H 0.037 0.963 37 H 0.089 0.911 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.044 0.956 50 H 0.072 0.928 51 H 0.075 0.925 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.155 -6.187 20.261 23.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.026 4.026 3 H 0.095 0.905 4 C -0.142 4.142 5 C -0.007 4.007 6 C -0.557 4.557 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.244 5.244 15 C -0.073 4.073 16 C -0.074 4.074 17 N -0.265 5.265 18 C -0.065 4.065 19 C -0.116 4.116 20 C -0.078 4.078 21 C -0.134 4.134 22 C -0.137 4.137 23 C -0.146 4.146 24 C -0.139 4.139 25 C -0.135 4.135 26 C -0.069 4.069 27 C -0.072 4.072 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.027 0.973 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.107 0.893 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.054 0.946 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.062 0.938 50 H 0.091 0.909 51 H 0.093 0.907 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.956 -6.145 20.277 23.852 hybrid contribution 0.513 -0.461 -0.806 1.061 sum -10.442 -6.607 19.471 23.061 Atomic orbital electron populations 1.22492 0.98851 1.01661 1.01272 1.21845 0.91109 0.98577 0.91053 0.90532 1.21753 1.00780 0.98336 0.93306 1.18988 0.88084 0.96693 0.96896 1.21340 0.91832 1.34070 1.08466 0.93122 1.24996 0.97155 0.95791 0.96461 1.69980 1.02166 1.44379 1.36851 0.86696 0.78129 0.80010 0.83735 1.20824 1.21347 1.20015 1.62290 1.59036 1.01698 1.01348 1.22194 0.97069 0.90056 0.97994 1.22240 0.99299 0.96919 0.88895 1.62200 1.59702 1.02453 1.02173 1.22016 0.96934 0.94329 0.93209 1.20626 1.00798 0.95329 0.94867 1.19929 0.95770 0.96918 0.95156 1.21137 0.96524 0.96945 0.98819 1.21168 0.99874 0.99794 0.92847 1.21141 0.96669 0.99112 0.97695 1.21142 0.97055 0.97253 0.98414 1.21083 1.00195 0.99932 0.92268 1.22128 0.98326 0.88601 0.97858 1.22120 0.98105 0.97331 0.89637 0.93348 0.92429 0.92669 0.93292 0.93301 0.97275 0.95167 0.93246 0.94485 0.89278 0.93575 0.90632 0.94617 0.90982 0.90195 0.90721 0.86001 0.86139 0.86325 0.86239 0.86063 0.93781 0.90941 0.90693 0.94394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 8.49 37.16 0.32 -2.30 16 2 C 0.08 1.42 2.35 -67.71 -0.16 1.26 16 3 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 4 C -0.10 -2.15 4.45 -26.73 -0.12 -2.27 16 5 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 6 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 7 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.43 13.29 55.43 0.74 -26.70 16 10 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 N -0.52 -8.73 4.15 -226.49 -0.94 -9.67 16 15 C 0.05 0.86 4.82 -3.77 -0.02 0.84 16 16 C 0.05 0.76 5.41 -3.76 -0.02 0.74 16 17 N -0.54 -6.85 4.71 -234.47 -1.10 -7.95 16 18 C 0.06 0.69 4.94 -3.83 -0.02 0.67 16 19 C -0.08 -0.76 5.28 -27.88 -0.15 -0.91 16 20 C -0.08 -0.75 5.13 -104.62 -0.54 -1.29 16 21 C -0.12 -1.13 9.70 -39.58 -0.38 -1.51 16 22 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 23 C -0.13 -1.07 10.05 -39.58 -0.40 -1.46 16 24 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 25 C -0.12 -1.05 9.70 -39.58 -0.38 -1.43 16 26 C 0.06 0.77 5.61 -3.77 -0.02 0.75 16 27 C 0.06 0.80 5.25 -3.77 -0.02 0.78 16 28 H 0.05 0.63 6.59 -51.93 -0.34 0.29 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.78 6.46 -51.93 -0.34 0.44 16 31 H 0.05 1.00 6.11 -51.93 -0.32 0.68 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.03 0.85 7.75 -51.93 -0.40 0.45 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.04 0.55 6.47 -51.93 -0.34 0.21 16 37 H 0.09 1.54 6.07 -51.93 -0.32 1.22 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.93 6.34 -51.93 -0.33 0.60 16 40 H 0.04 0.43 8.12 -51.92 -0.42 0.01 16 41 H 0.07 0.74 8.03 -51.93 -0.42 0.33 16 42 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 43 H 0.07 0.74 6.43 -51.93 -0.33 0.41 16 44 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 45 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 46 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 47 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 48 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 49 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 51 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 52 H 0.04 0.52 6.60 -51.93 -0.34 0.18 16 LS Contribution 398.12 15.07 6.00 6.00 Total: -1.00 -31.07 398.12 -12.93 -43.99 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -9.34 Total: -0.68 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -3.25 Total: -22.00 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -1.31 Total: -44.32 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.07 -12.93 -43.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507131.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.822 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds