Wall clock time and date at job start Tue Mar 31 2020 11:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 C 1.53001 * 109.47049 * 174.99763 * 4 2 1 6 6 C 1.50703 * 109.47033 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00117 * 0.02562 * 6 5 4 8 8 C 1.37870 * 119.99962 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00182 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00189 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46709 * 90.00129 * 10 8 6 12 12 H 1.48499 * 109.47362 * 210.00066 * 10 8 6 13 13 H 1.48507 * 109.46984 * 330.00534 * 10 8 6 14 14 N 1.46899 * 109.47163 * 120.00236 * 2 1 3 15 15 C 1.46948 * 111.00033 * 58.80189 * 14 2 1 16 16 C 1.53056 * 109.36577 * 176.81074 * 15 14 2 17 17 N 1.46962 * 109.36062 * 58.39971 * 16 15 14 18 18 C 1.46899 * 110.99727 * 176.81204 * 17 16 15 19 19 C 1.52996 * 109.47288 * 293.80283 * 18 17 16 20 20 C 1.50701 * 109.47307 * 179.97438 * 19 18 17 21 21 C 1.38236 * 120.00046 * 269.72262 * 20 19 18 22 22 C 1.38232 * 119.99954 * 179.76506 * 21 20 19 23 23 C 1.38240 * 120.00086 * 0.50761 * 22 21 20 24 24 C 1.38238 * 119.99847 * 359.74816 * 23 22 21 25 25 C 1.38231 * 119.99956 * 89.99620 * 20 19 18 26 26 C 1.46948 * 110.87941 * 300.68191 * 17 16 15 27 27 C 1.46962 * 110.99727 * 295.00082 * 14 2 1 28 28 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 29 29 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46934 * 294.99762 * 4 2 1 32 32 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 33 33 H 1.08998 * 109.47252 * 299.99805 * 5 4 2 34 34 H 1.08998 * 109.47250 * 59.99881 * 5 4 2 35 35 H 0.97002 * 120.00223 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.49218 * 296.77655 * 15 14 2 37 37 H 1.08998 * 109.49241 * 56.84045 * 15 14 2 38 38 H 1.08994 * 109.48673 * 298.43564 * 16 15 14 39 39 H 1.08999 * 109.48552 * 178.36506 * 16 15 14 40 40 H 1.09008 * 109.47232 * 53.79853 * 18 17 16 41 41 H 1.08996 * 109.47232 * 173.80081 * 18 17 16 42 42 H 1.09006 * 109.47150 * 299.99963 * 19 18 17 43 43 H 1.09000 * 109.47830 * 59.99524 * 19 18 17 44 44 H 1.08003 * 119.99965 * 0.02562 * 21 20 19 45 45 H 1.08003 * 119.99986 * 180.23533 * 22 21 20 46 46 H 1.07993 * 120.00310 * 179.72576 * 23 22 21 47 47 H 1.07993 * 120.00059 * 179.97438 * 24 23 22 48 48 H 1.08003 * 120.00315 * 0.02562 * 25 20 19 49 49 H 1.09003 * 109.49245 * 299.34953 * 26 17 16 50 50 H 1.08998 * 109.48890 * 179.29317 * 26 17 16 51 51 H 1.09000 * 109.48631 * 303.15232 * 27 14 2 52 52 H 1.08993 * 109.48843 * 63.20545 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5649 -0.6131 -1.3137 6 6 4.0673 -1.3240 -2.5439 7 1 3.3688 -1.8044 -3.2131 8 6 5.4184 -1.3602 -2.8157 9 7 6.2690 -0.7748 -2.0011 10 14 6.0413 -2.2419 -4.3402 11 1 6.0906 -1.2887 -5.4778 12 1 7.4030 -2.7753 -4.0820 13 1 5.1254 -3.3626 -4.6727 14 7 2.0197 -0.6925 1.1994 15 6 1.5253 -2.0755 1.2477 16 6 2.1203 -2.7849 2.4665 17 7 1.7491 -2.0530 3.6856 18 6 2.2388 -2.7455 4.8850 19 6 1.5131 -4.0842 5.0329 20 6 2.0159 -4.7950 6.2630 21 6 3.0919 -5.6580 6.1714 22 6 3.5562 -6.3062 7.3006 23 6 2.9378 -6.0995 8.5196 24 6 1.8585 -5.2406 8.6103 25 6 1.3976 -4.5883 7.4819 26 6 2.2436 -0.6700 3.6372 27 6 1.6486 0.0394 2.4185 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -1.7714 -1.2056 32 1 1.6054 -0.2616 -2.1370 33 1 3.8532 0.4371 -1.3574 34 1 3.9995 -1.0726 -0.4260 35 1 7.2196 -0.8005 -2.1921 36 1 0.4380 -2.0705 1.3248 37 1 1.8234 -2.6002 0.3401 38 1 3.2061 -2.8139 2.3761 39 1 1.7322 -3.8020 2.5205 40 1 3.3104 -2.9217 4.7908 41 1 2.0477 -2.1296 5.7637 42 1 0.4415 -3.9082 5.1271 43 1 1.7041 -4.7003 4.1542 44 1 3.5725 -5.8225 5.2183 45 1 4.3992 -6.9775 7.2297 46 1 3.2977 -6.6093 9.4010 47 1 1.3751 -5.0794 9.5624 48 1 0.5538 -3.9178 7.5527 49 1 3.3309 -0.6750 3.5602 50 1 1.9455 -0.1453 4.5448 51 1 2.0367 1.0565 2.3644 52 1 0.5628 0.0687 2.5087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172507131.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:41 Heat of formation + Delta-G solvation = 3.839603 kcal Electronic energy + Delta-G solvation = -26429.405385 eV Core-core repulsion = 23006.203919 eV Total energy + Delta-G solvation = -3423.201466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.77269 -40.07292 -37.94392 -35.50217 -34.39663 -32.84805 -31.87617 -31.73981 -30.88609 -29.19231 -27.16959 -26.43082 -24.75908 -23.71015 -23.43059 -23.03904 -21.59801 -21.42589 -20.01383 -18.37562 -17.78045 -17.38192 -16.58387 -16.45453 -16.26932 -15.98847 -15.78142 -15.71336 -15.36727 -15.17679 -14.63035 -14.44527 -14.31108 -14.12402 -14.03973 -13.84096 -13.66055 -13.26406 -13.17029 -13.00230 -12.83736 -12.76276 -12.69010 -12.35090 -12.33602 -12.14134 -11.91984 -11.84730 -11.73834 -11.61208 -11.46900 -11.30934 -11.17317 -10.89290 -10.49706 -9.80213 -9.60205 -9.38101 -8.97328 -8.14430 -6.25079 0.46024 0.52081 1.38841 1.40428 1.51235 2.42660 2.79097 2.98208 3.05753 3.17937 3.86558 3.89689 3.98289 4.02170 4.09305 4.19431 4.22549 4.28630 4.31829 4.33614 4.37157 4.43043 4.50745 4.54662 4.57861 4.64808 4.67490 4.68593 4.76609 4.85067 4.87995 4.94332 4.97681 5.03003 5.04621 5.07145 5.12599 5.16943 5.21187 5.26129 5.33379 5.46938 5.58944 5.60132 5.64977 5.75607 5.87444 5.99699 6.00482 6.05025 6.15788 6.30944 6.35439 6.37604 6.94893 7.43196 8.96845 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013312 B = 0.002655 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.784439 B =10542.950190 C =12051.613824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.088 3.912 3 H 0.066 0.934 4 C -0.093 4.093 5 C 0.042 3.958 6 C -0.541 4.541 7 H 0.056 0.944 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.960 3.040 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.263 1.263 14 N -0.548 5.548 15 C 0.060 3.940 16 C 0.061 3.939 17 N -0.534 5.534 18 C 0.067 3.933 19 C -0.069 4.069 20 C -0.090 4.090 21 C -0.135 4.135 22 C -0.130 4.130 23 C -0.133 4.133 24 C -0.125 4.125 25 C -0.124 4.124 26 C 0.061 3.939 27 C 0.059 3.941 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.052 0.948 33 H -0.023 1.023 34 H 0.000 1.000 35 H 0.261 0.739 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.015 0.985 39 H 0.093 0.907 40 H 0.020 0.980 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.119 0.881 45 H 0.133 0.867 46 H 0.140 0.860 47 H 0.142 0.858 48 H 0.135 0.865 49 H 0.020 0.980 50 H 0.099 0.901 51 H 0.075 0.925 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.891 -6.872 21.129 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 H 0.084 0.916 4 C -0.130 4.130 5 C 0.005 3.995 6 C -0.579 4.579 7 H 0.074 0.926 8 C -0.199 4.199 9 N -0.574 5.574 10 Si 0.785 3.215 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.188 1.188 14 N -0.273 5.273 15 C -0.068 4.068 16 C -0.067 4.067 17 N -0.258 5.258 18 C -0.060 4.060 19 C -0.106 4.106 20 C -0.091 4.091 21 C -0.153 4.153 22 C -0.148 4.148 23 C -0.151 4.151 24 C -0.143 4.143 25 C -0.142 4.142 26 C -0.067 4.067 27 C -0.068 4.068 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.070 0.930 33 H -0.004 1.004 34 H 0.018 0.982 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.034 0.966 39 H 0.111 0.889 40 H 0.038 0.962 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.137 0.863 45 H 0.151 0.849 46 H 0.157 0.843 47 H 0.160 0.840 48 H 0.153 0.847 49 H 0.038 0.962 50 H 0.117 0.883 51 H 0.094 0.906 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.710 -6.831 21.149 25.602 hybrid contribution 1.101 -0.243 -1.008 1.513 sum -11.609 -7.073 20.141 24.299 Atomic orbital electron populations 1.22338 0.95814 1.02268 1.02553 1.21648 0.93372 0.97288 0.89758 0.91616 1.21564 0.96713 0.99180 0.95589 1.18784 0.91927 0.93921 0.94880 1.21791 0.92454 1.34294 1.09326 0.92593 1.25954 0.97445 0.96540 0.99952 1.70128 1.02553 1.45722 1.38968 0.85527 0.77565 0.79009 0.79409 1.19815 1.20901 1.18765 1.62219 1.60272 1.02543 1.02232 1.22106 0.97782 0.89336 0.97552 1.22151 0.97347 0.97968 0.89274 1.62259 1.59228 1.02259 1.02083 1.22033 0.96156 0.95134 0.92697 1.20512 1.00879 0.94372 0.94864 1.19975 0.96191 0.97377 0.95514 1.21278 0.97063 0.97723 0.99237 1.21415 1.00431 0.99994 0.92950 1.21466 0.96516 0.98998 0.98155 1.21471 0.96955 0.96711 0.99188 1.21311 1.00556 1.00226 0.92120 1.22153 0.96853 0.89141 0.98601 1.22149 0.98901 0.97132 0.88666 0.91631 0.91583 0.92319 0.93021 0.92956 1.00442 0.98191 0.93072 0.93029 0.91629 0.96614 0.88851 0.96163 0.89777 0.89525 0.91337 0.86319 0.84883 0.84255 0.84039 0.84692 0.96176 0.88281 0.90624 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.52 8.49 71.98 0.61 -3.91 16 2 C 0.09 3.01 2.35 44.92 0.11 3.12 16 3 H 0.07 2.38 8.11 -2.39 -0.02 2.36 16 4 C -0.09 -3.90 4.45 30.59 0.14 -3.76 16 5 C 0.04 2.30 4.86 29.85 0.15 2.45 16 6 C -0.54 -31.77 9.11 25.60 0.23 -31.54 16 7 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 8 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 9 N -0.93 -58.88 13.29 21.44 0.28 -58.59 16 10 Si 0.96 45.57 29.54 68.60 2.03 47.60 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 14 N -0.55 -18.62 4.15 -870.48 -3.61 -22.23 16 15 C 0.06 1.88 4.82 86.31 0.42 2.29 16 16 C 0.06 1.73 5.41 86.31 0.47 2.19 16 17 N -0.53 -13.10 4.71 -895.73 -4.22 -17.32 16 18 C 0.07 1.43 4.94 86.30 0.43 1.86 16 19 C -0.07 -1.28 5.28 29.85 0.16 -1.12 16 20 C -0.09 -1.69 5.13 -19.87 -0.10 -1.79 16 21 C -0.13 -2.62 9.70 22.27 0.22 -2.40 16 22 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 23 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 24 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 25 C -0.12 -2.02 9.70 22.27 0.22 -1.81 16 26 C 0.06 1.55 5.61 86.31 0.48 2.03 16 27 C 0.06 1.63 5.25 86.31 0.45 2.08 16 28 H 0.06 1.53 6.59 -2.39 -0.02 1.51 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.06 1.52 6.46 -2.39 -0.02 1.50 16 31 H 0.05 2.13 6.11 -2.39 -0.01 2.12 16 32 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 33 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 34 H 0.00 -0.02 7.75 -2.39 -0.02 -0.04 16 35 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.05 1.45 6.47 -2.39 -0.02 1.44 16 37 H 0.07 2.33 6.07 -2.39 -0.01 2.31 16 38 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.09 2.28 6.34 -2.39 -0.02 2.27 16 40 H 0.02 0.49 8.12 -2.38 -0.02 0.48 16 41 H 0.08 1.60 8.03 -2.39 -0.02 1.58 16 42 H 0.09 1.50 8.09 -2.38 -0.02 1.48 16 43 H 0.07 1.34 6.43 -2.39 -0.02 1.33 16 44 H 0.12 2.25 8.06 -2.91 -0.02 2.22 16 45 H 0.13 1.80 8.06 -2.91 -0.02 1.77 16 46 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 47 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 48 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 49 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.10 2.00 8.07 -2.39 -0.02 1.99 16 51 H 0.08 2.04 8.12 -2.39 -0.02 2.02 16 52 H 0.05 1.29 6.60 -2.39 -0.02 1.28 16 Total: -1.00 -68.41 398.12 0.43 -67.98 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.86 Total: 17.88 kcal Atomic # 6 Polarization: -40.41 SS G_CDS: 5.10 Total: -35.31 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -7.55 Total: -98.14 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -68.41 0.43 -67.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507131.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.815 kcal (2) G-P(sol) polarization free energy of solvation -68.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds