Wall clock time and date at job start Tue Mar 31 2020 11:35:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08999 * 109.47543 * 2 1
4 4 C 1.52999 * 109.47029 * 240.00062 * 2 1 3
5 5 C 1.52998 * 109.47076 * 176.68230 * 4 2 1
6 6 C 1.50700 * 109.47129 * 175.23117 * 5 4 2
7 7 H 1.07996 * 120.00225 * 0.02562 * 6 5 4
8 8 C 1.37881 * 120.00088 * 180.02562 * 6 5 4
9 9 N 1.31516 * 120.00119 * 359.97438 * 8 6 5
10 10 Si 1.86808 * 120.00077 * 180.02562 * 8 6 5
11 11 H 1.48497 * 109.46868 * 59.99709 * 10 8 6
12 12 H 1.48498 * 109.46741 * 179.97438 * 10 8 6
13 13 H 1.48498 * 109.46760 * 299.99617 * 10 8 6
14 14 N 1.46898 * 109.47153 * 120.00100 * 2 1 3
15 15 C 1.40082 * 110.99993 * 287.99773 * 14 2 1
16 16 C 1.54519 * 111.51174 * 188.15231 * 15 14 2
17 17 C 1.50751 * 108.93826 * 283.99041 * 16 15 14
18 18 N 1.48067 * 112.93525 * 92.65027 * 17 16 15
19 19 C 1.46901 * 110.99627 * 192.21438 * 18 17 16
20 20 C 1.50698 * 109.47207 * 293.95502 * 19 18 17
21 21 C 1.38241 * 119.99740 * 269.72545 * 20 19 18
22 22 C 1.38236 * 119.99791 * 179.76540 * 21 20 19
23 23 C 1.38233 * 119.99809 * 0.49134 * 22 21 20
24 24 C 1.38242 * 120.00362 * 359.78298 * 23 22 21
25 25 C 1.38235 * 119.99731 * 359.96296 * 24 23 22
26 26 C 1.47749 * 113.79154 * 318.28042 * 18 17 16
27 27 C 1.47682 * 111.00239 * 56.64100 * 14 2 1
28 28 H 1.08996 * 109.47104 * 184.66450 * 1 2 3
29 29 H 1.08997 * 109.46902 * 304.66118 * 1 2 3
30 30 H 1.08993 * 109.47084 * 64.66185 * 1 2 3
31 31 H 1.08997 * 109.47098 * 56.68222 * 4 2 1
32 32 H 1.08996 * 109.47131 * 296.68465 * 4 2 1
33 33 H 1.09000 * 109.47131 * 55.23370 * 5 4 2
34 34 H 1.09001 * 109.47676 * 295.22873 * 5 4 2
35 35 H 0.97001 * 120.00377 * 180.02562 * 9 8 6
36 36 H 1.08996 * 109.07374 * 308.66877 * 15 14 2
37 37 H 1.08997 * 109.07204 * 67.62860 * 15 14 2
38 38 H 1.09002 * 109.55801 * 43.82712 * 16 15 14
39 39 H 1.08991 * 109.56096 * 164.04609 * 16 15 14
40 40 H 1.09002 * 108.78513 * 213.53650 * 17 16 15
41 41 H 1.08995 * 108.78898 * 331.87139 * 17 16 15
42 42 H 1.09000 * 109.46867 * 53.95599 * 19 18 17
43 43 H 1.09004 * 109.46966 * 173.95625 * 19 18 17
44 44 H 1.07997 * 120.00072 * 359.97438 * 21 20 19
45 45 H 1.07994 * 120.00052 * 180.25175 * 22 21 20
46 46 H 1.08005 * 120.00017 * 179.76826 * 23 22 21
47 47 H 1.07989 * 119.99651 * 179.97438 * 24 23 22
48 48 H 1.07994 * 119.99896 * 179.97438 * 25 24 23
49 49 H 1.08993 * 108.98991 * 79.50347 * 26 18 17
50 50 H 1.08996 * 108.99055 * 198.25438 * 26 18 17
51 51 H 1.09002 * 109.73606 * 271.63990 * 27 14 2
52 52 H 1.09000 * 109.73910 * 32.33428 * 27 14 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7212 -1.2492
5 6 3.5677 -0.6493 -1.2917
6 6 4.0764 -1.4582 -2.4570
7 1 3.3798 -1.9718 -3.1030
8 6 5.4313 -1.5425 -2.6985
9 7 6.2796 -0.9167 -1.9122
10 14 6.0619 -2.5446 -4.1435
11 1 5.5058 -1.9961 -5.4064
12 1 7.5447 -2.4749 -4.1845
13 1 5.6365 -3.9588 -3.9882
14 7 2.0196 -0.6925 1.1994
15 6 1.8060 0.0806 2.3479
16 6 2.4938 -0.5398 3.5846
17 6 1.6820 -1.7196 4.0555
18 7 2.1340 -3.0019 3.4692
19 6 1.1549 -4.0685 3.7178
20 6 1.0875 -4.3540 5.1959
21 6 1.9162 -5.3095 5.7538
22 6 1.8577 -5.5680 7.1105
23 6 0.9635 -4.8782 7.9076
24 6 0.1308 -3.9267 7.3488
25 6 0.1929 -3.6645 5.9930
26 6 2.4695 -2.9153 2.0329
27 6 1.4813 -2.0657 1.2746
28 1 -0.3633 -1.0242 0.0836
29 1 -0.3633 0.5844 0.8453
30 1 -0.3633 0.4398 -0.9287
31 1 1.6289 -0.2429 -2.1382
32 1 1.7260 -1.7646 -1.2200
33 1 3.9762 -1.0513 -0.3645
34 1 3.8796 0.3888 -1.4063
35 1 7.2328 -0.9758 -2.0822
36 1 2.2054 1.0813 2.1829
37 1 0.7346 0.1523 2.5347
38 1 3.4971 -0.8709 3.3165
39 1 2.5551 0.2035 4.3794
40 1 1.7547 -1.7849 5.1411
41 1 0.6389 -1.5592 3.7830
42 1 0.1741 -3.7509 3.3639
43 1 1.4581 -4.9709 3.1869
44 1 2.6116 -5.8517 5.1303
45 1 2.5080 -6.3116 7.5471
46 1 0.9152 -5.0828 8.9670
47 1 -0.5680 -3.3881 7.9715
48 1 -0.4578 -2.9214 5.5563
49 1 3.4642 -2.4828 1.9265
50 1 2.4734 -3.9192 1.6084
51 1 0.5249 -2.0579 1.7975
52 1 1.3484 -2.4646 0.2690
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001172507403.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:35:37
Heat of formation + Delta-G solvation = 32.664803 kcal
Electronic energy + Delta-G solvation = -27328.444174 eV
Core-core repulsion = 23906.492662 eV
Total energy + Delta-G solvation = -3421.951511 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-40.10731 -39.16030 -36.68475 -33.88818 -32.67882 -31.83419 -31.09982 -30.89123
-29.22390 -27.70256 -25.63062 -24.90911 -24.83151 -22.67493 -21.92646 -21.36632
-20.56577 -19.92343 -18.80080 -16.93597 -16.51207 -16.09579 -15.93718 -15.39812
-15.25850 -14.84875 -14.68909 -14.39145 -14.10811 -13.55232 -13.38852 -13.24515
-12.97414 -12.92077 -12.70286 -12.49519 -12.18815 -12.16234 -11.84708 -11.63853
-11.44353 -11.39769 -11.17719 -11.15616 -11.09374 -10.89044 -10.83949 -10.46945
-10.44451 -10.28026 -10.02421 -9.56394 -9.18717 -9.03235 -8.89833 -8.87593
-8.22928 -8.13110 -7.59965 -5.87270 -3.88638 1.21434 1.28675 3.38694
3.43407 3.45437 3.57666 4.12540 4.27868 4.54632 4.65365 4.72900
4.86588 4.94488 5.00076 5.08734 5.16492 5.27172 5.37249 5.39637
5.44507 5.48030 5.51129 5.53784 5.59000 5.62890 5.65919 5.71946
5.74552 5.87273 5.88733 5.92695 6.02650 6.09970 6.12103 6.18824
6.26987 6.32652 6.35449 6.37816 6.47572 6.53192 6.63052 6.67270
6.87430 6.90439 7.17448 7.25247 7.29782 7.61443 7.84340 7.89407
8.08298 8.24339 8.57956 9.20086 9.73881 11.23542
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.015719 B = 0.003049 C = 0.002738
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1780.841470 B = 9181.496269 C =10222.319452
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C 0.086 3.914
3 H 0.076 0.924
4 C -0.103 4.103
5 C 0.031 3.969
6 C -0.519 4.519
7 H 0.049 0.951
8 C 0.058 3.942
9 N -0.893 5.893
10 Si 0.885 3.115
11 H -0.279 1.279
12 H -0.288 1.288
13 H -0.278 1.278
14 N -0.532 5.532
15 C 0.076 3.924
16 C -0.124 4.124
17 C 0.066 3.934
18 N -0.540 5.540
19 C 0.093 3.907
20 C -0.070 4.070
21 C -0.099 4.099
22 C -0.122 4.122
23 C -0.126 4.126
24 C -0.123 4.123
25 C -0.115 4.115
26 C 0.058 3.942
27 C 0.039 3.961
28 H 0.051 0.949
29 H 0.044 0.956
30 H 0.058 0.942
31 H 0.046 0.954
32 H 0.049 0.951
33 H 0.035 0.965
34 H 0.007 0.993
35 H 0.259 0.741
36 H 0.069 0.931
37 H 0.010 0.990
38 H 0.088 0.912
39 H 0.070 0.930
40 H 0.068 0.932
41 H 0.025 0.975
42 H 0.038 0.962
43 H 0.083 0.917
44 H 0.123 0.877
45 H 0.120 0.880
46 H 0.118 0.882
47 H 0.118 0.882
48 H 0.116 0.884
49 H 0.099 0.901
50 H 0.070 0.930
51 H 0.028 0.972
52 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.504 -4.623 17.812 22.825
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.240 4.240
2 C -0.021 4.021
3 H 0.094 0.906
4 C -0.141 4.141
5 C -0.006 4.006
6 C -0.557 4.557
7 H 0.067 0.933
8 C -0.143 4.143
9 N -0.533 5.533
10 Si 0.714 3.286
11 H -0.205 1.205
12 H -0.214 1.214
13 H -0.204 1.204
14 N -0.255 5.255
15 C -0.054 4.054
16 C -0.162 4.162
17 C -0.061 4.061
18 N -0.264 5.264
19 C -0.034 4.034
20 C -0.071 4.071
21 C -0.117 4.117
22 C -0.140 4.140
23 C -0.144 4.144
24 C -0.141 4.141
25 C -0.133 4.133
26 C -0.069 4.069
27 C -0.090 4.090
28 H 0.070 0.930
29 H 0.063 0.937
30 H 0.077 0.923
31 H 0.065 0.935
32 H 0.067 0.933
33 H 0.053 0.947
34 H 0.025 0.975
35 H 0.068 0.932
36 H 0.087 0.913
37 H 0.028 0.972
38 H 0.107 0.893
39 H 0.088 0.912
40 H 0.086 0.914
41 H 0.043 0.957
42 H 0.056 0.944
43 H 0.101 0.899
44 H 0.141 0.859
45 H 0.138 0.862
46 H 0.136 0.864
47 H 0.136 0.864
48 H 0.134 0.866
49 H 0.117 0.883
50 H 0.089 0.911
51 H 0.046 0.954
52 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -12.413 -4.737 18.029 22.396
hybrid contribution -1.219 -0.157 -1.100 1.650
sum -13.633 -4.894 16.929 22.280
Atomic orbital electron populations
1.22487 0.98951 1.01293 1.01306 1.21826 0.90886 0.98335 0.91097
0.90630 1.21763 1.00968 0.98193 0.93159 1.18988 0.87866 0.96465
0.97329 1.21282 0.91552 1.30471 1.12444 0.93300 1.24980 0.97164
0.95846 0.96285 1.69963 1.02122 1.43183 1.37999 0.86773 0.77642
0.80846 0.83370 1.20490 1.21407 1.20386 1.59043 1.61761 1.02171
1.02516 1.21028 0.96641 0.97201 0.90557 1.21599 1.01458 0.96320
0.96805 1.21833 0.96496 0.88693 0.99090 1.62127 1.42807 1.05274
1.16234 1.21079 0.94619 0.95865 0.91849 1.19832 0.95709 0.95924
0.95605 1.21061 0.98116 0.97598 0.94975 1.21152 0.98884 0.99988
0.93978 1.21116 0.96639 0.97007 0.99625 1.21086 0.99562 0.98421
0.95050 1.21052 0.98940 0.99480 0.93846 1.22092 1.00979 0.99537
0.84266 1.22359 0.95408 0.89720 1.01467 0.92994 0.93711 0.92309
0.93506 0.93294 0.94687 0.97471 0.93177 0.91255 0.97207 0.89343
0.91175 0.91409 0.95670 0.94419 0.89888 0.85890 0.86222 0.86431
0.86397 0.86642 0.88305 0.91130 0.95430 0.89446
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.53 8.69 37.16 0.32 -2.21 16
2 C 0.09 1.44 2.28 -67.72 -0.15 1.29 16
3 H 0.08 1.32 7.81 -51.93 -0.41 0.91 16
4 C -0.10 -2.09 4.52 -26.73 -0.12 -2.21 16
5 C 0.03 0.79 4.91 -27.88 -0.14 0.65 16
6 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16
7 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16
8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16
9 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16
10 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16
11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
14 N -0.53 -8.59 3.22 -231.70 -0.75 -9.33 16
15 C 0.08 1.06 4.68 -6.55 -0.03 1.03 16
16 C -0.12 -1.62 5.68 -27.06 -0.15 -1.77 16
17 C 0.07 0.82 4.19 -4.31 -0.02 0.80 16
18 N -0.54 -7.05 4.73 -237.13 -1.12 -8.17 16
19 C 0.09 1.06 4.99 -4.98 -0.02 1.04 16
20 C -0.07 -0.77 4.89 -104.62 -0.51 -1.28 16
21 C -0.10 -1.04 9.70 -39.58 -0.38 -1.43 16
22 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16
23 C -0.13 -1.13 10.05 -39.58 -0.40 -1.52 16
24 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16
25 C -0.11 -1.16 8.26 -39.58 -0.33 -1.49 16
26 C 0.06 0.86 5.25 -4.47 -0.02 0.84 16
27 C 0.04 0.58 3.73 -4.51 -0.02 0.56 16
28 H 0.05 0.71 6.68 -51.93 -0.35 0.37 16
29 H 0.04 0.58 7.09 -51.93 -0.37 0.21 16
30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16
31 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16
32 H 0.05 0.98 6.01 -51.93 -0.31 0.67 16
33 H 0.03 0.96 7.57 -51.93 -0.39 0.57 16
34 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16
35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
36 H 0.07 0.99 7.81 -51.93 -0.41 0.58 16
37 H 0.01 0.14 6.43 -51.93 -0.33 -0.20 16
38 H 0.09 1.36 7.19 -51.93 -0.37 0.99 16
39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
40 H 0.07 0.83 6.92 -51.93 -0.36 0.47 16
41 H 0.03 0.31 6.28 -51.93 -0.33 -0.01 16
42 H 0.04 0.42 7.67 -51.93 -0.40 0.02 16
43 H 0.08 0.90 7.64 -51.93 -0.40 0.50 16
44 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16
45 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16
46 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16
47 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16
48 H 0.12 1.08 8.03 -52.49 -0.42 0.66 16
49 H 0.10 1.75 7.20 -51.93 -0.37 1.38 16
50 H 0.07 0.99 7.58 -51.93 -0.39 0.60 16
51 H 0.03 0.39 6.15 -51.93 -0.32 0.07 16
52 H 0.09 1.41 5.52 -51.93 -0.29 1.12 16
LS Contribution 389.02 15.07 5.86 5.86
Total: -1.00 -30.18 389.02 -12.61 -42.79
By element:
Atomic # 1 Polarization: 9.76 SS G_CDS: -9.14 Total: 0.63 kcal
Atomic # 6 Polarization: -19.07 SS G_CDS: -3.18 Total: -22.26 kcal
Atomic # 7 Polarization: -42.79 SS G_CDS: -1.13 Total: -43.92 kcal
Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -30.18 -12.61 -42.79 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001172507403.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.460 kcal
(2) G-P(sol) polarization free energy of solvation -30.184 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.276 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.611 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.795 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.665 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds