Wall clock time and date at job start Tue Mar 31 2020 11:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47543 * 2 1 4 4 C 1.52999 * 109.47029 * 240.00062 * 2 1 3 5 5 C 1.52998 * 109.47076 * 176.68230 * 4 2 1 6 6 C 1.50700 * 109.47129 * 175.23117 * 5 4 2 7 7 H 1.07996 * 120.00225 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00088 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00119 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 120.00077 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46868 * 59.99709 * 10 8 6 12 12 H 1.48498 * 109.46741 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46760 * 299.99617 * 10 8 6 14 14 N 1.46898 * 109.47153 * 120.00100 * 2 1 3 15 15 C 1.40082 * 110.99993 * 287.99773 * 14 2 1 16 16 C 1.54519 * 111.51174 * 188.15231 * 15 14 2 17 17 C 1.50751 * 108.93826 * 283.99041 * 16 15 14 18 18 N 1.48067 * 112.93525 * 92.65027 * 17 16 15 19 19 C 1.46901 * 110.99627 * 192.21438 * 18 17 16 20 20 C 1.50698 * 109.47207 * 293.95502 * 19 18 17 21 21 C 1.38241 * 119.99740 * 269.72545 * 20 19 18 22 22 C 1.38236 * 119.99791 * 179.76540 * 21 20 19 23 23 C 1.38233 * 119.99809 * 0.49134 * 22 21 20 24 24 C 1.38242 * 120.00362 * 359.78298 * 23 22 21 25 25 C 1.38235 * 119.99731 * 359.96296 * 24 23 22 26 26 C 1.47749 * 113.79154 * 318.28042 * 18 17 16 27 27 C 1.47682 * 111.00239 * 56.64100 * 14 2 1 28 28 H 1.08996 * 109.47104 * 184.66450 * 1 2 3 29 29 H 1.08997 * 109.46902 * 304.66118 * 1 2 3 30 30 H 1.08993 * 109.47084 * 64.66185 * 1 2 3 31 31 H 1.08997 * 109.47098 * 56.68222 * 4 2 1 32 32 H 1.08996 * 109.47131 * 296.68465 * 4 2 1 33 33 H 1.09000 * 109.47131 * 55.23370 * 5 4 2 34 34 H 1.09001 * 109.47676 * 295.22873 * 5 4 2 35 35 H 0.97001 * 120.00377 * 180.02562 * 9 8 6 36 36 H 1.08996 * 109.07374 * 308.66877 * 15 14 2 37 37 H 1.08997 * 109.07204 * 67.62860 * 15 14 2 38 38 H 1.09002 * 109.55801 * 43.82712 * 16 15 14 39 39 H 1.08991 * 109.56096 * 164.04609 * 16 15 14 40 40 H 1.09002 * 108.78513 * 213.53650 * 17 16 15 41 41 H 1.08995 * 108.78898 * 331.87139 * 17 16 15 42 42 H 1.09000 * 109.46867 * 53.95599 * 19 18 17 43 43 H 1.09004 * 109.46966 * 173.95625 * 19 18 17 44 44 H 1.07997 * 120.00072 * 359.97438 * 21 20 19 45 45 H 1.07994 * 120.00052 * 180.25175 * 22 21 20 46 46 H 1.08005 * 120.00017 * 179.76826 * 23 22 21 47 47 H 1.07989 * 119.99651 * 179.97438 * 24 23 22 48 48 H 1.07994 * 119.99896 * 179.97438 * 25 24 23 49 49 H 1.08993 * 108.98991 * 79.50347 * 26 18 17 50 50 H 1.08996 * 108.99055 * 198.25438 * 26 18 17 51 51 H 1.09002 * 109.73606 * 271.63990 * 27 14 2 52 52 H 1.09000 * 109.73910 * 32.33428 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5677 -0.6493 -1.2917 6 6 4.0764 -1.4582 -2.4570 7 1 3.3798 -1.9718 -3.1030 8 6 5.4313 -1.5425 -2.6985 9 7 6.2796 -0.9167 -1.9122 10 14 6.0619 -2.5446 -4.1435 11 1 5.5058 -1.9961 -5.4064 12 1 7.5447 -2.4749 -4.1845 13 1 5.6365 -3.9588 -3.9882 14 7 2.0196 -0.6925 1.1994 15 6 1.8060 0.0806 2.3479 16 6 2.4938 -0.5398 3.5846 17 6 1.6820 -1.7196 4.0555 18 7 2.1340 -3.0019 3.4692 19 6 1.1549 -4.0685 3.7178 20 6 1.0875 -4.3540 5.1959 21 6 1.9162 -5.3095 5.7538 22 6 1.8577 -5.5680 7.1105 23 6 0.9635 -4.8782 7.9076 24 6 0.1308 -3.9267 7.3488 25 6 0.1929 -3.6645 5.9930 26 6 2.4695 -2.9153 2.0329 27 6 1.4813 -2.0657 1.2746 28 1 -0.3633 -1.0242 0.0836 29 1 -0.3633 0.5844 0.8453 30 1 -0.3633 0.4398 -0.9287 31 1 1.6289 -0.2429 -2.1382 32 1 1.7260 -1.7646 -1.2200 33 1 3.9762 -1.0513 -0.3645 34 1 3.8796 0.3888 -1.4063 35 1 7.2328 -0.9758 -2.0822 36 1 2.2054 1.0813 2.1829 37 1 0.7346 0.1523 2.5347 38 1 3.4971 -0.8709 3.3165 39 1 2.5551 0.2035 4.3794 40 1 1.7547 -1.7849 5.1411 41 1 0.6389 -1.5592 3.7830 42 1 0.1741 -3.7509 3.3639 43 1 1.4581 -4.9709 3.1869 44 1 2.6116 -5.8517 5.1303 45 1 2.5080 -6.3116 7.5471 46 1 0.9152 -5.0828 8.9670 47 1 -0.5680 -3.3881 7.9715 48 1 -0.4578 -2.9214 5.5563 49 1 3.4642 -2.4828 1.9265 50 1 2.4734 -3.9192 1.6084 51 1 0.5249 -2.0579 1.7975 52 1 1.3484 -2.4646 0.2690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507403.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:37 Heat of formation + Delta-G solvation = 32.664803 kcal Electronic energy + Delta-G solvation = -27328.444174 eV Core-core repulsion = 23906.492662 eV Total energy + Delta-G solvation = -3421.951511 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.10731 -39.16030 -36.68475 -33.88818 -32.67882 -31.83419 -31.09982 -30.89123 -29.22390 -27.70256 -25.63062 -24.90911 -24.83151 -22.67493 -21.92646 -21.36632 -20.56577 -19.92343 -18.80080 -16.93597 -16.51207 -16.09579 -15.93718 -15.39812 -15.25850 -14.84875 -14.68909 -14.39145 -14.10811 -13.55232 -13.38852 -13.24515 -12.97414 -12.92077 -12.70286 -12.49519 -12.18815 -12.16234 -11.84708 -11.63853 -11.44353 -11.39769 -11.17719 -11.15616 -11.09374 -10.89044 -10.83949 -10.46945 -10.44451 -10.28026 -10.02421 -9.56394 -9.18717 -9.03235 -8.89833 -8.87593 -8.22928 -8.13110 -7.59965 -5.87270 -3.88638 1.21434 1.28675 3.38694 3.43407 3.45437 3.57666 4.12540 4.27868 4.54632 4.65365 4.72900 4.86588 4.94488 5.00076 5.08734 5.16492 5.27172 5.37249 5.39637 5.44507 5.48030 5.51129 5.53784 5.59000 5.62890 5.65919 5.71946 5.74552 5.87273 5.88733 5.92695 6.02650 6.09970 6.12103 6.18824 6.26987 6.32652 6.35449 6.37816 6.47572 6.53192 6.63052 6.67270 6.87430 6.90439 7.17448 7.25247 7.29782 7.61443 7.84340 7.89407 8.08298 8.24339 8.57956 9.20086 9.73881 11.23542 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.003049 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.841470 B = 9181.496269 C =10222.319452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.086 3.914 3 H 0.076 0.924 4 C -0.103 4.103 5 C 0.031 3.969 6 C -0.519 4.519 7 H 0.049 0.951 8 C 0.058 3.942 9 N -0.893 5.893 10 Si 0.885 3.115 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.532 5.532 15 C 0.076 3.924 16 C -0.124 4.124 17 C 0.066 3.934 18 N -0.540 5.540 19 C 0.093 3.907 20 C -0.070 4.070 21 C -0.099 4.099 22 C -0.122 4.122 23 C -0.126 4.126 24 C -0.123 4.123 25 C -0.115 4.115 26 C 0.058 3.942 27 C 0.039 3.961 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.035 0.965 34 H 0.007 0.993 35 H 0.259 0.741 36 H 0.069 0.931 37 H 0.010 0.990 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.025 0.975 42 H 0.038 0.962 43 H 0.083 0.917 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.116 0.884 49 H 0.099 0.901 50 H 0.070 0.930 51 H 0.028 0.972 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.504 -4.623 17.812 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.021 4.021 3 H 0.094 0.906 4 C -0.141 4.141 5 C -0.006 4.006 6 C -0.557 4.557 7 H 0.067 0.933 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.714 3.286 11 H -0.205 1.205 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.255 5.255 15 C -0.054 4.054 16 C -0.162 4.162 17 C -0.061 4.061 18 N -0.264 5.264 19 C -0.034 4.034 20 C -0.071 4.071 21 C -0.117 4.117 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.141 4.141 25 C -0.133 4.133 26 C -0.069 4.069 27 C -0.090 4.090 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.025 0.975 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.028 0.972 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.043 0.957 42 H 0.056 0.944 43 H 0.101 0.899 44 H 0.141 0.859 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.134 0.866 49 H 0.117 0.883 50 H 0.089 0.911 51 H 0.046 0.954 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.413 -4.737 18.029 22.396 hybrid contribution -1.219 -0.157 -1.100 1.650 sum -13.633 -4.894 16.929 22.280 Atomic orbital electron populations 1.22487 0.98951 1.01293 1.01306 1.21826 0.90886 0.98335 0.91097 0.90630 1.21763 1.00968 0.98193 0.93159 1.18988 0.87866 0.96465 0.97329 1.21282 0.91552 1.30471 1.12444 0.93300 1.24980 0.97164 0.95846 0.96285 1.69963 1.02122 1.43183 1.37999 0.86773 0.77642 0.80846 0.83370 1.20490 1.21407 1.20386 1.59043 1.61761 1.02171 1.02516 1.21028 0.96641 0.97201 0.90557 1.21599 1.01458 0.96320 0.96805 1.21833 0.96496 0.88693 0.99090 1.62127 1.42807 1.05274 1.16234 1.21079 0.94619 0.95865 0.91849 1.19832 0.95709 0.95924 0.95605 1.21061 0.98116 0.97598 0.94975 1.21152 0.98884 0.99988 0.93978 1.21116 0.96639 0.97007 0.99625 1.21086 0.99562 0.98421 0.95050 1.21052 0.98940 0.99480 0.93846 1.22092 1.00979 0.99537 0.84266 1.22359 0.95408 0.89720 1.01467 0.92994 0.93711 0.92309 0.93506 0.93294 0.94687 0.97471 0.93177 0.91255 0.97207 0.89343 0.91175 0.91409 0.95670 0.94419 0.89888 0.85890 0.86222 0.86431 0.86397 0.86642 0.88305 0.91130 0.95430 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 8.69 37.16 0.32 -2.21 16 2 C 0.09 1.44 2.28 -67.72 -0.15 1.29 16 3 H 0.08 1.32 7.81 -51.93 -0.41 0.91 16 4 C -0.10 -2.09 4.52 -26.73 -0.12 -2.21 16 5 C 0.03 0.79 4.91 -27.88 -0.14 0.65 16 6 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 7 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 10 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 N -0.53 -8.59 3.22 -231.70 -0.75 -9.33 16 15 C 0.08 1.06 4.68 -6.55 -0.03 1.03 16 16 C -0.12 -1.62 5.68 -27.06 -0.15 -1.77 16 17 C 0.07 0.82 4.19 -4.31 -0.02 0.80 16 18 N -0.54 -7.05 4.73 -237.13 -1.12 -8.17 16 19 C 0.09 1.06 4.99 -4.98 -0.02 1.04 16 20 C -0.07 -0.77 4.89 -104.62 -0.51 -1.28 16 21 C -0.10 -1.04 9.70 -39.58 -0.38 -1.43 16 22 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.13 -1.13 10.05 -39.58 -0.40 -1.52 16 24 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 25 C -0.11 -1.16 8.26 -39.58 -0.33 -1.49 16 26 C 0.06 0.86 5.25 -4.47 -0.02 0.84 16 27 C 0.04 0.58 3.73 -4.51 -0.02 0.56 16 28 H 0.05 0.71 6.68 -51.93 -0.35 0.37 16 29 H 0.04 0.58 7.09 -51.93 -0.37 0.21 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.98 6.01 -51.93 -0.31 0.67 16 33 H 0.03 0.96 7.57 -51.93 -0.39 0.57 16 34 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.07 0.99 7.81 -51.93 -0.41 0.58 16 37 H 0.01 0.14 6.43 -51.93 -0.33 -0.20 16 38 H 0.09 1.36 7.19 -51.93 -0.37 0.99 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.83 6.92 -51.93 -0.36 0.47 16 41 H 0.03 0.31 6.28 -51.93 -0.33 -0.01 16 42 H 0.04 0.42 7.67 -51.93 -0.40 0.02 16 43 H 0.08 0.90 7.64 -51.93 -0.40 0.50 16 44 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 45 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 47 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 48 H 0.12 1.08 8.03 -52.49 -0.42 0.66 16 49 H 0.10 1.75 7.20 -51.93 -0.37 1.38 16 50 H 0.07 0.99 7.58 -51.93 -0.39 0.60 16 51 H 0.03 0.39 6.15 -51.93 -0.32 0.07 16 52 H 0.09 1.41 5.52 -51.93 -0.29 1.12 16 LS Contribution 389.02 15.07 5.86 5.86 Total: -1.00 -30.18 389.02 -12.61 -42.79 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -9.14 Total: 0.63 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -3.18 Total: -22.26 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -1.13 Total: -43.92 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.18 -12.61 -42.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507403.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.460 kcal (2) G-P(sol) polarization free energy of solvation -30.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds