Wall clock time and date at job start Tue Mar 31 2020 11:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47543 * 2 1 4 4 C 1.52999 * 109.47029 * 240.00062 * 2 1 3 5 5 C 1.52998 * 109.47076 * 176.68230 * 4 2 1 6 6 C 1.50700 * 109.47129 * 175.23117 * 5 4 2 7 7 H 1.07996 * 120.00225 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00088 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00119 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 120.00077 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46868 * 59.99709 * 10 8 6 12 12 H 1.48498 * 109.46741 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46760 * 299.99617 * 10 8 6 14 14 N 1.46898 * 109.47153 * 120.00100 * 2 1 3 15 15 C 1.40082 * 110.99993 * 287.99773 * 14 2 1 16 16 C 1.54519 * 111.51174 * 188.15231 * 15 14 2 17 17 C 1.50751 * 108.93826 * 283.99041 * 16 15 14 18 18 N 1.48067 * 112.93525 * 92.65027 * 17 16 15 19 19 C 1.46901 * 110.99627 * 192.21438 * 18 17 16 20 20 C 1.50698 * 109.47207 * 293.95502 * 19 18 17 21 21 C 1.38241 * 119.99740 * 269.72545 * 20 19 18 22 22 C 1.38236 * 119.99791 * 179.76540 * 21 20 19 23 23 C 1.38233 * 119.99809 * 0.49134 * 22 21 20 24 24 C 1.38242 * 120.00362 * 359.78298 * 23 22 21 25 25 C 1.38235 * 119.99731 * 359.96296 * 24 23 22 26 26 C 1.47749 * 113.79154 * 318.28042 * 18 17 16 27 27 C 1.47682 * 111.00239 * 56.64100 * 14 2 1 28 28 H 1.08996 * 109.47104 * 184.66450 * 1 2 3 29 29 H 1.08997 * 109.46902 * 304.66118 * 1 2 3 30 30 H 1.08993 * 109.47084 * 64.66185 * 1 2 3 31 31 H 1.08997 * 109.47098 * 56.68222 * 4 2 1 32 32 H 1.08996 * 109.47131 * 296.68465 * 4 2 1 33 33 H 1.09000 * 109.47131 * 55.23370 * 5 4 2 34 34 H 1.09001 * 109.47676 * 295.22873 * 5 4 2 35 35 H 0.97001 * 120.00377 * 180.02562 * 9 8 6 36 36 H 1.08996 * 109.07374 * 308.66877 * 15 14 2 37 37 H 1.08997 * 109.07204 * 67.62860 * 15 14 2 38 38 H 1.09002 * 109.55801 * 43.82712 * 16 15 14 39 39 H 1.08991 * 109.56096 * 164.04609 * 16 15 14 40 40 H 1.09002 * 108.78513 * 213.53650 * 17 16 15 41 41 H 1.08995 * 108.78898 * 331.87139 * 17 16 15 42 42 H 1.09000 * 109.46867 * 53.95599 * 19 18 17 43 43 H 1.09004 * 109.46966 * 173.95625 * 19 18 17 44 44 H 1.07997 * 120.00072 * 359.97438 * 21 20 19 45 45 H 1.07994 * 120.00052 * 180.25175 * 22 21 20 46 46 H 1.08005 * 120.00017 * 179.76826 * 23 22 21 47 47 H 1.07989 * 119.99651 * 179.97438 * 24 23 22 48 48 H 1.07994 * 119.99896 * 179.97438 * 25 24 23 49 49 H 1.08993 * 108.98991 * 79.50347 * 26 18 17 50 50 H 1.08996 * 108.99055 * 198.25438 * 26 18 17 51 51 H 1.09002 * 109.73606 * 271.63990 * 27 14 2 52 52 H 1.09000 * 109.73910 * 32.33428 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5677 -0.6493 -1.2917 6 6 4.0764 -1.4582 -2.4570 7 1 3.3798 -1.9718 -3.1030 8 6 5.4313 -1.5425 -2.6985 9 7 6.2796 -0.9167 -1.9122 10 14 6.0619 -2.5446 -4.1435 11 1 5.5058 -1.9961 -5.4064 12 1 7.5447 -2.4749 -4.1845 13 1 5.6365 -3.9588 -3.9882 14 7 2.0196 -0.6925 1.1994 15 6 1.8060 0.0806 2.3479 16 6 2.4938 -0.5398 3.5846 17 6 1.6820 -1.7196 4.0555 18 7 2.1340 -3.0019 3.4692 19 6 1.1549 -4.0685 3.7178 20 6 1.0875 -4.3540 5.1959 21 6 1.9162 -5.3095 5.7538 22 6 1.8577 -5.5680 7.1105 23 6 0.9635 -4.8782 7.9076 24 6 0.1308 -3.9267 7.3488 25 6 0.1929 -3.6645 5.9930 26 6 2.4695 -2.9153 2.0329 27 6 1.4813 -2.0657 1.2746 28 1 -0.3633 -1.0242 0.0836 29 1 -0.3633 0.5844 0.8453 30 1 -0.3633 0.4398 -0.9287 31 1 1.6289 -0.2429 -2.1382 32 1 1.7260 -1.7646 -1.2200 33 1 3.9762 -1.0513 -0.3645 34 1 3.8796 0.3888 -1.4063 35 1 7.2328 -0.9758 -2.0822 36 1 2.2054 1.0813 2.1829 37 1 0.7346 0.1523 2.5347 38 1 3.4971 -0.8709 3.3165 39 1 2.5551 0.2035 4.3794 40 1 1.7547 -1.7849 5.1411 41 1 0.6389 -1.5592 3.7830 42 1 0.1741 -3.7509 3.3639 43 1 1.4581 -4.9709 3.1869 44 1 2.6116 -5.8517 5.1303 45 1 2.5080 -6.3116 7.5471 46 1 0.9152 -5.0828 8.9670 47 1 -0.5680 -3.3881 7.9715 48 1 -0.4578 -2.9214 5.5563 49 1 3.4642 -2.4828 1.9265 50 1 2.4734 -3.9192 1.6084 51 1 0.5249 -2.0579 1.7975 52 1 1.3484 -2.4646 0.2690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172507403.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:36 Heat of formation + Delta-G solvation = 16.682562 kcal Electronic energy + Delta-G solvation = -27329.137216 eV Core-core repulsion = 23906.492662 eV Total energy + Delta-G solvation = -3422.644553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.20995 -40.02666 -37.83632 -35.55842 -34.30286 -32.84244 -32.40189 -31.71872 -30.75829 -28.76222 -27.12930 -26.44636 -25.81432 -23.56796 -23.33331 -22.45541 -21.89931 -21.06577 -20.10673 -18.36504 -17.71635 -17.63232 -16.95650 -16.51755 -16.31605 -16.19334 -15.99387 -15.63892 -15.15068 -14.70081 -14.49560 -14.33655 -14.24530 -14.10849 -13.81777 -13.77518 -13.45131 -13.34456 -13.14862 -13.07973 -12.98048 -12.77479 -12.51109 -12.42001 -12.34210 -12.20404 -11.96815 -11.83886 -11.73650 -11.52083 -11.43661 -11.28324 -11.14666 -10.89757 -10.44966 -9.75882 -9.65409 -9.21223 -8.79577 -8.10762 -6.20754 0.47299 0.56143 1.40738 1.43519 1.51127 2.45168 2.75183 3.03452 3.20125 3.21759 3.79421 3.84668 3.97966 4.02224 4.04791 4.18140 4.21130 4.24171 4.30934 4.35782 4.39952 4.43779 4.48542 4.52065 4.57825 4.66259 4.72730 4.73824 4.79559 4.82284 4.83645 4.93872 5.00937 5.05832 5.07730 5.12192 5.16556 5.21479 5.28423 5.35346 5.38796 5.48102 5.61298 5.62450 5.67302 5.76665 5.92132 6.07261 6.13143 6.14790 6.21678 6.35364 6.38628 6.68793 6.99342 7.47001 9.00123 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.003049 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.841470 B = 9181.496269 C =10222.319452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.091 3.909 3 H 0.065 0.935 4 C -0.092 4.092 5 C 0.042 3.958 6 C -0.539 4.539 7 H 0.054 0.946 8 C 0.001 3.999 9 N -0.931 5.931 10 Si 0.957 3.043 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.267 1.267 14 N -0.554 5.554 15 C 0.077 3.923 16 C -0.118 4.118 17 C 0.073 3.927 18 N -0.547 5.547 19 C 0.098 3.902 20 C -0.085 4.085 21 C -0.116 4.116 22 C -0.129 4.129 23 C -0.129 4.129 24 C -0.127 4.127 25 C -0.123 4.123 26 C 0.068 3.932 27 C 0.049 3.951 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.009 0.991 34 H -0.026 1.026 35 H 0.260 0.740 36 H 0.063 0.937 37 H 0.026 0.974 38 H 0.058 0.942 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.042 0.958 43 H 0.083 0.917 44 H 0.122 0.878 45 H 0.136 0.864 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.123 0.877 49 H 0.061 0.939 50 H 0.073 0.927 51 H 0.043 0.957 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.378 -5.339 18.684 24.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.016 4.016 3 H 0.083 0.917 4 C -0.129 4.129 5 C 0.005 3.995 6 C -0.577 4.577 7 H 0.072 0.928 8 C -0.197 4.197 9 N -0.572 5.572 10 Si 0.782 3.218 11 H -0.194 1.194 12 H -0.211 1.211 13 H -0.192 1.192 14 N -0.278 5.278 15 C -0.052 4.052 16 C -0.156 4.156 17 C -0.053 4.053 18 N -0.272 5.272 19 C -0.030 4.030 20 C -0.085 4.085 21 C -0.134 4.134 22 C -0.147 4.147 23 C -0.147 4.147 24 C -0.145 4.145 25 C -0.141 4.141 26 C -0.060 4.060 27 C -0.079 4.079 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.027 0.973 34 H -0.008 1.008 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.044 0.956 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.101 0.899 44 H 0.140 0.860 45 H 0.154 0.846 46 H 0.158 0.842 47 H 0.157 0.843 48 H 0.141 0.859 49 H 0.080 0.920 50 H 0.092 0.908 51 H 0.061 0.939 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.310 -5.456 18.906 24.331 hybrid contribution -0.599 0.069 -1.301 1.434 sum -14.909 -5.387 17.605 23.690 Atomic orbital electron populations 1.22334 0.95995 1.01998 1.02454 1.21637 0.93089 0.97092 0.89825 0.91682 1.21573 0.96917 0.99061 0.95381 1.18787 0.91704 0.93690 0.95353 1.21740 0.92119 1.30692 1.13196 0.92791 1.25902 0.97501 0.96996 0.99253 1.70113 1.02420 1.44686 1.39964 0.85635 0.76968 0.79461 0.79765 1.19402 1.21081 1.19244 1.58968 1.62794 1.02912 1.03084 1.21040 0.97546 0.96643 0.90016 1.21567 0.99800 0.97234 0.97044 1.21771 0.96445 0.87932 0.99195 1.62072 1.44083 1.06196 1.14808 1.21058 0.94153 0.95146 0.92596 1.19839 0.96653 0.96773 0.95275 1.21204 0.98441 0.97986 0.95784 1.21418 0.99280 1.00403 0.93622 1.21456 0.95968 0.96428 1.00816 1.21394 0.99793 0.98418 0.94927 1.21198 0.98910 0.99619 0.94382 1.21864 0.99115 0.99310 0.85704 1.22245 0.95919 0.88950 1.00782 0.92516 0.92106 0.91550 0.93235 0.92967 0.97276 1.00781 0.93123 0.91813 0.95625 0.92279 0.89087 0.90838 0.94993 0.93965 0.89861 0.86021 0.84571 0.84152 0.84298 0.85948 0.92039 0.90837 0.93883 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.36 8.69 71.98 0.63 -3.73 16 2 C 0.09 3.05 2.28 44.91 0.10 3.15 16 3 H 0.06 2.30 7.81 -2.39 -0.02 2.28 16 4 C -0.09 -3.75 4.52 30.59 0.14 -3.62 16 5 C 0.04 2.24 4.91 29.85 0.15 2.39 16 6 C -0.54 -31.27 9.11 25.60 0.23 -31.04 16 7 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 8 C 0.00 0.05 5.46 84.66 0.46 0.52 16 9 N -0.93 -58.25 13.29 21.45 0.28 -57.96 16 10 Si 0.96 45.29 29.54 68.60 2.03 47.32 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 14 N -0.55 -18.06 3.22 -886.95 -2.86 -20.92 16 15 C 0.08 2.12 4.68 88.05 0.41 2.53 16 16 C -0.12 -3.06 5.68 30.38 0.17 -2.89 16 17 C 0.07 1.74 4.19 85.35 0.36 2.10 16 18 N -0.55 -14.21 4.73 -904.14 -4.27 -18.48 16 19 C 0.10 2.15 4.99 85.56 0.43 2.57 16 20 C -0.08 -1.78 4.89 -19.86 -0.10 -1.87 16 21 C -0.12 -2.36 9.70 22.27 0.22 -2.14 16 22 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 23 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 24 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 25 C -0.12 -2.27 8.26 22.27 0.18 -2.09 16 26 C 0.07 2.06 5.25 85.42 0.45 2.51 16 27 C 0.05 1.46 3.73 85.43 0.32 1.77 16 28 H 0.06 1.42 6.68 -2.39 -0.02 1.40 16 29 H 0.06 1.39 7.09 -2.39 -0.02 1.38 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.05 2.10 6.01 -2.39 -0.01 2.08 16 33 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 34 H -0.03 -1.56 8.14 -2.39 -0.02 -1.58 16 35 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.06 1.81 7.81 -2.39 -0.02 1.79 16 37 H 0.03 0.64 6.43 -2.39 -0.02 0.62 16 38 H 0.06 1.90 7.19 -2.39 -0.02 1.88 16 39 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 1.68 6.92 -2.39 -0.02 1.67 16 41 H 0.03 0.72 6.28 -2.39 -0.02 0.71 16 42 H 0.04 0.89 7.67 -2.39 -0.02 0.87 16 43 H 0.08 1.78 7.64 -2.38 -0.02 1.77 16 44 H 0.12 2.39 8.06 -2.91 -0.02 2.37 16 45 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 46 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 47 H 0.14 1.58 8.06 -2.92 -0.02 1.55 16 48 H 0.12 2.03 8.03 -2.91 -0.02 2.00 16 49 H 0.06 2.34 7.20 -2.39 -0.02 2.32 16 50 H 0.07 2.13 7.58 -2.39 -0.02 2.12 16 51 H 0.04 1.14 6.15 -2.39 -0.01 1.13 16 52 H 0.07 2.39 5.52 -2.39 -0.01 2.38 16 Total: -1.00 -66.33 389.02 0.87 -65.47 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.87 Total: 20.03 kcal Atomic # 6 Polarization: -40.27 SS G_CDS: 4.82 Total: -35.45 kcal Atomic # 7 Polarization: -90.52 SS G_CDS: -6.84 Total: -97.37 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -66.33 0.87 -65.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507403.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.149 kcal (2) G-P(sol) polarization free energy of solvation -66.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds