Wall clock time and date at job start Tue Mar 31 2020 11:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47380 * 2 1 4 4 C 1.53001 * 109.47561 * 240.00218 * 2 1 3 5 5 C 1.52998 * 109.47490 * 177.36386 * 4 2 1 6 6 C 1.50695 * 109.47270 * 184.97999 * 5 4 2 7 7 H 1.08005 * 119.99907 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00211 * 179.97438 * 6 5 4 9 9 N 1.31509 * 119.99871 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99996 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46876 * 89.99959 * 10 8 6 12 12 H 1.48502 * 109.47105 * 210.00025 * 10 8 6 13 13 H 1.48497 * 109.47428 * 330.00254 * 10 8 6 14 14 N 1.46899 * 109.47272 * 119.99832 * 2 1 3 15 15 C 1.46960 * 110.99816 * 60.49537 * 14 2 1 16 16 C 1.53046 * 109.36375 * 176.80991 * 15 14 2 17 17 N 1.46955 * 109.36361 * 58.40158 * 16 15 14 18 18 C 1.46902 * 110.99873 * 176.80849 * 17 16 15 19 19 C 1.50706 * 109.47471 * 293.95427 * 18 17 16 20 20 C 1.38230 * 120.00129 * 269.72827 * 19 18 17 21 21 C 1.38235 * 120.00083 * 179.76443 * 20 19 18 22 22 C 1.38232 * 119.99709 * 0.48509 * 21 20 19 23 23 C 1.38243 * 120.00077 * 359.79085 * 22 21 20 24 24 C 1.38230 * 119.99611 * 89.99960 * 19 18 17 25 25 C 1.46949 * 110.88418 * 300.67879 * 17 16 15 26 26 C 1.46950 * 111.00273 * 296.69888 * 14 2 1 27 27 H 1.09000 * 109.49276 * 63.21446 * 26 14 2 28 28 C 1.53007 * 109.48849 * 303.15108 * 26 14 2 29 29 H 1.08997 * 109.47470 * 303.69218 * 1 2 3 30 30 H 1.09005 * 109.47226 * 63.69786 * 1 2 3 31 31 H 1.09001 * 109.47061 * 183.68982 * 1 2 3 32 32 H 1.09000 * 109.46656 * 297.36117 * 4 2 1 33 33 H 1.08997 * 109.47182 * 57.35824 * 4 2 1 34 34 H 1.09007 * 109.46737 * 304.97825 * 5 4 2 35 35 H 1.08991 * 109.47551 * 64.97597 * 5 4 2 36 36 H 0.97000 * 120.00114 * 180.02562 * 9 8 6 37 37 H 1.08992 * 109.49253 * 296.78053 * 15 14 2 38 38 H 1.09007 * 109.48890 * 56.84948 * 15 14 2 39 39 H 1.09003 * 109.49107 * 178.36824 * 16 15 14 40 40 H 1.08997 * 109.49318 * 298.41316 * 16 15 14 41 41 H 1.08999 * 109.47623 * 53.95839 * 18 17 16 42 42 H 1.09003 * 109.47043 * 173.96041 * 18 17 16 43 43 H 1.08005 * 119.99947 * 0.02562 * 20 19 18 44 44 H 1.07997 * 120.00088 * 180.25513 * 21 20 19 45 45 H 1.07997 * 120.00107 * 179.77253 * 22 21 20 46 46 H 1.08002 * 119.99759 * 179.97438 * 23 22 21 47 47 H 1.08001 * 120.00609 * 0.02562 * 24 19 18 48 48 H 1.08998 * 109.49419 * 179.28790 * 25 17 16 49 49 H 1.09005 * 109.48844 * 299.35375 * 25 17 16 50 50 H 1.09006 * 109.46735 * 66.92932 * 28 26 14 51 51 H 1.09000 * 109.47101 * 186.92134 * 28 26 14 52 52 H 1.08993 * 109.47185 * 306.93121 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5686 -0.6640 -1.2828 6 6 4.0656 -1.2658 -2.5719 7 1 3.3616 -1.6510 -3.2948 8 6 5.4190 -1.3247 -2.8285 9 7 6.2762 -0.8552 -1.9486 10 14 6.0351 -2.0714 -4.4262 11 1 6.1371 -1.0112 -5.4610 12 1 7.3724 -2.6782 -4.2057 13 1 5.0856 -3.1182 -4.8819 14 7 2.0196 -0.6924 1.1994 15 6 1.5581 -2.0874 1.2275 16 6 2.1533 -2.7944 2.4475 17 7 1.7477 -2.0839 3.6683 18 6 2.2374 -2.7764 4.8677 19 6 1.5555 -4.1149 4.9886 20 6 0.3729 -4.2268 5.6956 21 6 -0.2551 -5.4536 5.8024 22 6 0.3047 -6.5704 5.2107 23 6 1.4903 -6.4596 4.5084 24 6 2.1155 -5.2318 4.3973 25 6 2.2092 -0.6890 3.6403 26 6 1.6141 0.0180 2.4202 27 1 0.5267 0.0201 2.4956 28 6 2.1251 1.4591 2.3658 29 1 -0.3634 0.5701 0.8550 30 1 -0.3634 0.4554 -0.9213 31 1 -0.3633 -1.0255 0.0661 32 1 1.7159 -1.7616 -1.2259 33 1 1.6386 -0.2354 -2.1386 34 1 3.8948 0.3740 -1.2169 35 1 3.9719 -1.2257 -0.4404 36 1 7.2283 -0.8963 -2.1293 37 1 0.4702 -2.1094 1.2893 38 1 1.8815 -2.5958 0.3191 39 1 1.7892 -3.8211 2.4864 40 1 3.2406 -2.7967 2.3720 41 1 3.3145 -2.9233 4.7882 42 1 2.0168 -2.1753 5.7498 43 1 -0.0626 -3.3548 6.1610 44 1 -1.1812 -5.5402 6.3513 45 1 -0.1840 -7.5296 5.2972 46 1 1.9279 -7.3323 4.0465 47 1 3.0420 -5.1453 3.8489 48 1 1.8859 -0.1806 4.5487 49 1 3.2972 -0.6670 3.5785 50 1 1.6099 1.9975 1.5702 51 1 1.9323 1.9493 3.3200 52 1 3.1970 1.4573 2.1682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507569.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:45 Heat of formation + Delta-G solvation = 27.071245 kcal Electronic energy + Delta-G solvation = -27382.945341 eV Core-core repulsion = 23960.751275 eV Total energy + Delta-G solvation = -3422.194066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.98795 -39.07623 -36.48690 -33.77299 -32.53928 -31.89934 -30.99030 -30.72271 -29.14438 -27.19472 -26.48074 -25.08962 -24.02116 -22.74241 -22.10264 -21.44579 -20.71373 -20.00892 -18.43823 -16.86424 -16.26671 -16.12246 -15.59985 -15.39344 -15.13668 -14.71075 -14.50065 -14.37062 -14.21104 -13.83159 -13.50168 -13.29870 -13.01378 -12.68244 -12.57554 -12.29299 -12.21764 -12.10272 -11.84754 -11.61651 -11.48247 -11.35904 -11.32495 -11.10059 -11.05689 -10.86640 -10.85378 -10.58152 -10.42589 -10.11860 -10.00955 -9.51916 -9.17673 -8.99697 -8.88598 -8.86328 -8.25879 -8.23090 -7.67790 -5.88538 -3.89943 1.23118 1.31244 3.36556 3.42811 3.46092 3.58723 4.14447 4.26934 4.53792 4.65252 4.75363 4.90270 4.99212 5.00938 5.16036 5.24043 5.32833 5.39739 5.46637 5.47464 5.50704 5.56027 5.57277 5.63019 5.65486 5.69269 5.76538 5.83408 5.89408 5.90289 5.94424 6.05476 6.09818 6.21203 6.26330 6.32142 6.35437 6.37604 6.39416 6.40814 6.53705 6.57533 6.73804 6.89242 6.91993 7.07584 7.11948 7.30719 7.62587 7.67348 7.85836 8.07760 8.22043 8.57520 9.19259 9.72828 11.22224 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012296 B = 0.003397 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.583037 B = 8240.046340 C = 9481.735823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.080 3.920 3 H 0.081 0.919 4 C -0.105 4.105 5 C 0.034 3.966 6 C -0.520 4.520 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.885 3.115 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 N -0.513 5.513 15 C 0.056 3.944 16 C 0.055 3.945 17 N -0.534 5.534 18 C 0.092 3.908 19 C -0.072 4.072 20 C -0.100 4.100 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.121 4.121 24 C -0.112 4.112 25 C 0.064 3.936 26 C 0.083 3.917 27 H 0.045 0.955 28 C -0.146 4.146 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.010 0.990 35 H 0.028 0.972 36 H 0.258 0.742 37 H 0.036 0.964 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.080 0.920 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.072 0.928 49 H 0.045 0.955 50 H 0.057 0.943 51 H 0.053 0.947 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.484 -4.595 17.196 21.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.028 4.028 3 H 0.099 0.901 4 C -0.142 4.142 5 C -0.003 4.003 6 C -0.558 4.558 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.714 3.286 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.200 1.200 14 N -0.238 5.238 15 C -0.072 4.072 16 C -0.073 4.073 17 N -0.259 5.259 18 C -0.035 4.035 19 C -0.073 4.073 20 C -0.119 4.119 21 C -0.142 4.142 22 C -0.142 4.142 23 C -0.139 4.139 24 C -0.131 4.131 25 C -0.064 4.064 26 C -0.026 4.026 27 H 0.062 0.938 28 C -0.204 4.204 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.028 0.972 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.098 0.902 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.139 0.861 48 H 0.090 0.910 49 H 0.063 0.937 50 H 0.076 0.924 51 H 0.072 0.928 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.275 -4.560 17.227 21.639 hybrid contribution 0.395 -0.455 -0.962 1.136 sum -11.879 -5.015 16.265 20.756 Atomic orbital electron populations 1.22489 0.98998 1.01570 1.01271 1.21897 0.91019 0.98965 0.90938 0.90076 1.21763 1.00846 0.98199 0.93433 1.18945 0.87904 0.96942 0.96519 1.21364 0.91557 1.39098 1.03788 0.93157 1.24989 0.97137 0.95785 0.96433 1.69979 1.01786 1.46819 1.34734 0.86706 0.78146 0.79441 0.84341 1.20837 1.21352 1.20019 1.62351 1.59037 1.01386 1.01027 1.22179 0.97285 0.89742 0.98015 1.22264 0.98885 0.97457 0.88685 1.62208 1.59748 1.02141 1.01762 1.21024 0.96609 0.91931 0.93981 1.19764 0.95602 0.94548 0.97374 1.20995 0.94719 0.97354 0.98836 1.21123 0.99882 0.92956 1.00240 1.21129 0.96203 0.98544 0.98366 1.21136 0.95891 0.97542 0.99320 1.21144 1.00237 0.92488 0.99207 1.22196 0.98532 0.88014 0.97685 1.21590 0.97438 0.93561 0.89983 0.93754 1.21847 1.02819 0.94664 1.01050 0.93399 0.92470 0.92720 0.93498 0.93276 0.97199 0.95384 0.93273 0.94592 0.89189 0.90471 0.93655 0.93800 0.90179 0.86177 0.86326 0.86389 0.86148 0.86100 0.90963 0.93700 0.92353 0.92773 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.68 8.50 37.15 0.32 -2.36 16 2 C 0.08 1.37 2.03 -67.72 -0.14 1.24 16 3 H 0.08 1.44 6.22 -51.93 -0.32 1.12 16 4 C -0.10 -2.17 4.36 -26.73 -0.12 -2.29 16 5 C 0.03 0.89 4.77 -27.89 -0.13 0.75 16 6 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 7 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.29 13.29 55.43 0.74 -26.56 16 10 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 N -0.51 -8.58 3.97 -218.57 -0.87 -9.45 16 15 C 0.06 0.90 4.84 -3.77 -0.02 0.88 16 16 C 0.05 0.80 5.25 -3.77 -0.02 0.78 16 17 N -0.53 -6.96 4.70 -235.91 -1.11 -8.07 16 18 C 0.09 1.03 5.12 -4.97 -0.03 1.00 16 19 C -0.07 -0.81 4.89 -104.63 -0.51 -1.32 16 20 C -0.10 -1.04 9.70 -39.59 -0.38 -1.42 16 21 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 22 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 23 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 24 C -0.11 -1.24 7.91 -39.59 -0.31 -1.55 16 25 C 0.06 0.83 4.89 -3.77 -0.02 0.81 16 26 C 0.08 1.17 2.15 -67.66 -0.15 1.03 16 27 H 0.04 0.64 6.64 -51.93 -0.34 0.29 16 28 C -0.15 -1.91 8.63 37.16 0.32 -1.59 16 29 H 0.05 0.64 6.74 -51.93 -0.35 0.29 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.80 6.29 -51.93 -0.33 0.47 16 32 H 0.05 0.96 6.19 -51.93 -0.32 0.64 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.03 0.78 7.83 -51.93 -0.41 0.38 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.04 0.57 6.41 -51.93 -0.33 0.23 16 38 H 0.09 1.61 6.07 -51.92 -0.32 1.29 16 39 H 0.08 1.08 5.95 -51.93 -0.31 0.77 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.04 0.51 8.07 -51.93 -0.42 0.09 16 42 H 0.08 0.78 7.97 -51.93 -0.41 0.37 16 43 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 44 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 47 H 0.12 1.30 7.99 -52.49 -0.42 0.88 16 48 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 49 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.06 0.76 6.70 -51.93 -0.35 0.41 16 51 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 392.98 15.07 5.92 5.92 Total: -1.00 -30.77 392.98 -12.37 -43.14 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -9.24 Total: 0.47 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -2.79 Total: -22.46 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: -1.24 Total: -44.08 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.77 -12.37 -43.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507569.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.215 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds