Wall clock time and date at job start Tue Mar 31 2020 11:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47380 * 2 1 4 4 C 1.53001 * 109.47561 * 240.00218 * 2 1 3 5 5 C 1.52998 * 109.47490 * 177.36386 * 4 2 1 6 6 C 1.50695 * 109.47270 * 184.97999 * 5 4 2 7 7 H 1.08005 * 119.99907 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00211 * 179.97438 * 6 5 4 9 9 N 1.31509 * 119.99871 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99996 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46876 * 89.99959 * 10 8 6 12 12 H 1.48502 * 109.47105 * 210.00025 * 10 8 6 13 13 H 1.48497 * 109.47428 * 330.00254 * 10 8 6 14 14 N 1.46899 * 109.47272 * 119.99832 * 2 1 3 15 15 C 1.46960 * 110.99816 * 60.49537 * 14 2 1 16 16 C 1.53046 * 109.36375 * 176.80991 * 15 14 2 17 17 N 1.46955 * 109.36361 * 58.40158 * 16 15 14 18 18 C 1.46902 * 110.99873 * 176.80849 * 17 16 15 19 19 C 1.50706 * 109.47471 * 293.95427 * 18 17 16 20 20 C 1.38230 * 120.00129 * 269.72827 * 19 18 17 21 21 C 1.38235 * 120.00083 * 179.76443 * 20 19 18 22 22 C 1.38232 * 119.99709 * 0.48509 * 21 20 19 23 23 C 1.38243 * 120.00077 * 359.79085 * 22 21 20 24 24 C 1.38230 * 119.99611 * 89.99960 * 19 18 17 25 25 C 1.46949 * 110.88418 * 300.67879 * 17 16 15 26 26 C 1.46950 * 111.00273 * 296.69888 * 14 2 1 27 27 H 1.09000 * 109.49276 * 63.21446 * 26 14 2 28 28 C 1.53007 * 109.48849 * 303.15108 * 26 14 2 29 29 H 1.08997 * 109.47470 * 303.69218 * 1 2 3 30 30 H 1.09005 * 109.47226 * 63.69786 * 1 2 3 31 31 H 1.09001 * 109.47061 * 183.68982 * 1 2 3 32 32 H 1.09000 * 109.46656 * 297.36117 * 4 2 1 33 33 H 1.08997 * 109.47182 * 57.35824 * 4 2 1 34 34 H 1.09007 * 109.46737 * 304.97825 * 5 4 2 35 35 H 1.08991 * 109.47551 * 64.97597 * 5 4 2 36 36 H 0.97000 * 120.00114 * 180.02562 * 9 8 6 37 37 H 1.08992 * 109.49253 * 296.78053 * 15 14 2 38 38 H 1.09007 * 109.48890 * 56.84948 * 15 14 2 39 39 H 1.09003 * 109.49107 * 178.36824 * 16 15 14 40 40 H 1.08997 * 109.49318 * 298.41316 * 16 15 14 41 41 H 1.08999 * 109.47623 * 53.95839 * 18 17 16 42 42 H 1.09003 * 109.47043 * 173.96041 * 18 17 16 43 43 H 1.08005 * 119.99947 * 0.02562 * 20 19 18 44 44 H 1.07997 * 120.00088 * 180.25513 * 21 20 19 45 45 H 1.07997 * 120.00107 * 179.77253 * 22 21 20 46 46 H 1.08002 * 119.99759 * 179.97438 * 23 22 21 47 47 H 1.08001 * 120.00609 * 0.02562 * 24 19 18 48 48 H 1.08998 * 109.49419 * 179.28790 * 25 17 16 49 49 H 1.09005 * 109.48844 * 299.35375 * 25 17 16 50 50 H 1.09006 * 109.46735 * 66.92932 * 28 26 14 51 51 H 1.09000 * 109.47101 * 186.92134 * 28 26 14 52 52 H 1.08993 * 109.47185 * 306.93121 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5686 -0.6640 -1.2828 6 6 4.0656 -1.2658 -2.5719 7 1 3.3616 -1.6510 -3.2948 8 6 5.4190 -1.3247 -2.8285 9 7 6.2762 -0.8552 -1.9486 10 14 6.0351 -2.0714 -4.4262 11 1 6.1371 -1.0112 -5.4610 12 1 7.3724 -2.6782 -4.2057 13 1 5.0856 -3.1182 -4.8819 14 7 2.0196 -0.6924 1.1994 15 6 1.5581 -2.0874 1.2275 16 6 2.1533 -2.7944 2.4475 17 7 1.7477 -2.0839 3.6683 18 6 2.2374 -2.7764 4.8677 19 6 1.5555 -4.1149 4.9886 20 6 0.3729 -4.2268 5.6956 21 6 -0.2551 -5.4536 5.8024 22 6 0.3047 -6.5704 5.2107 23 6 1.4903 -6.4596 4.5084 24 6 2.1155 -5.2318 4.3973 25 6 2.2092 -0.6890 3.6403 26 6 1.6141 0.0180 2.4202 27 1 0.5267 0.0201 2.4956 28 6 2.1251 1.4591 2.3658 29 1 -0.3634 0.5701 0.8550 30 1 -0.3634 0.4554 -0.9213 31 1 -0.3633 -1.0255 0.0661 32 1 1.7159 -1.7616 -1.2259 33 1 1.6386 -0.2354 -2.1386 34 1 3.8948 0.3740 -1.2169 35 1 3.9719 -1.2257 -0.4404 36 1 7.2283 -0.8963 -2.1293 37 1 0.4702 -2.1094 1.2893 38 1 1.8815 -2.5958 0.3191 39 1 1.7892 -3.8211 2.4864 40 1 3.2406 -2.7967 2.3720 41 1 3.3145 -2.9233 4.7882 42 1 2.0168 -2.1753 5.7498 43 1 -0.0626 -3.3548 6.1610 44 1 -1.1812 -5.5402 6.3513 45 1 -0.1840 -7.5296 5.2972 46 1 1.9279 -7.3323 4.0465 47 1 3.0420 -5.1453 3.8489 48 1 1.8859 -0.1806 4.5487 49 1 3.2972 -0.6670 3.5785 50 1 1.6099 1.9975 1.5702 51 1 1.9323 1.9493 3.3200 52 1 3.1970 1.4573 2.1682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172507569.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:44 Heat of formation + Delta-G solvation = 9.998887 kcal Electronic energy + Delta-G solvation = -27383.685654 eV Core-core repulsion = 23960.751275 eV Total energy + Delta-G solvation = -3422.934379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.08719 -40.00771 -37.67595 -35.51765 -34.17033 -32.98987 -32.09534 -31.74072 -30.71229 -28.36354 -27.45218 -27.02958 -25.16019 -23.64487 -23.36894 -22.88563 -21.68537 -21.46706 -19.74951 -18.37020 -17.62958 -17.50169 -16.63557 -16.46034 -16.35464 -16.17064 -15.75365 -15.57354 -15.43665 -15.00482 -14.63377 -14.41326 -14.24414 -14.10257 -13.74130 -13.59532 -13.46692 -13.15215 -13.13852 -13.09782 -12.87147 -12.79388 -12.63770 -12.50032 -12.34131 -12.29556 -12.02595 -11.82013 -11.72694 -11.67780 -11.45948 -11.21445 -11.10465 -10.88284 -10.49330 -9.77143 -9.69347 -9.33406 -8.95824 -8.14152 -6.24776 0.45173 0.54700 1.38649 1.40087 1.50920 2.42647 2.72999 3.01275 3.17987 3.18643 3.79472 3.85315 3.96091 3.98554 4.13217 4.19600 4.25263 4.30629 4.32873 4.35287 4.40680 4.45071 4.46703 4.49867 4.63901 4.70958 4.73612 4.76101 4.79950 4.80856 4.87519 4.90916 4.94454 5.00590 5.05974 5.14413 5.14573 5.20150 5.22188 5.33423 5.36856 5.50557 5.59186 5.60164 5.66188 5.72947 5.89330 5.99172 6.00396 6.02915 6.16890 6.32096 6.36575 6.41973 6.95137 7.43411 8.96876 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012296 B = 0.003397 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.583037 B = 8240.046340 C = 9481.735823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.086 3.914 3 H 0.073 0.927 4 C -0.094 4.094 5 C 0.048 3.952 6 C -0.543 4.543 7 H 0.054 0.946 8 C 0.000 4.000 9 N -0.931 5.931 10 Si 0.959 3.041 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.264 1.264 14 N -0.537 5.537 15 C 0.062 3.938 16 C 0.066 3.934 17 N -0.529 5.529 18 C 0.094 3.906 19 C -0.086 4.086 20 C -0.107 4.107 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.131 4.131 24 C -0.130 4.130 25 C 0.066 3.934 26 C 0.084 3.916 27 H 0.054 0.946 28 C -0.141 4.141 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.050 0.950 34 H -0.022 1.022 35 H -0.002 1.002 36 H 0.260 0.740 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.017 0.983 41 H 0.034 0.966 42 H 0.100 0.900 43 H 0.134 0.866 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.132 0.868 47 H 0.112 0.888 48 H 0.102 0.898 49 H 0.024 0.976 50 H 0.057 0.943 51 H 0.083 0.917 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.634 -5.036 17.908 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.022 4.022 3 H 0.091 0.909 4 C -0.131 4.131 5 C 0.011 3.989 6 C -0.581 4.581 7 H 0.072 0.928 8 C -0.197 4.197 9 N -0.572 5.572 10 Si 0.784 3.216 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.189 1.189 14 N -0.263 5.263 15 C -0.066 4.066 16 C -0.063 4.063 17 N -0.254 5.254 18 C -0.033 4.033 19 C -0.087 4.087 20 C -0.126 4.126 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.149 4.149 24 C -0.149 4.149 25 C -0.062 4.062 26 C -0.024 4.024 27 H 0.072 0.928 28 C -0.199 4.199 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.069 0.931 34 H -0.003 1.003 35 H 0.016 0.984 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.035 0.965 41 H 0.052 0.948 42 H 0.118 0.882 43 H 0.152 0.848 44 H 0.160 0.840 45 H 0.159 0.841 46 H 0.150 0.850 47 H 0.130 0.870 48 H 0.120 0.880 49 H 0.042 0.958 50 H 0.076 0.924 51 H 0.102 0.898 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -14.439 -4.999 17.945 23.569 hybrid contribution 1.088 -0.338 -1.133 1.607 sum -13.351 -5.337 16.813 22.123 Atomic orbital electron populations 1.22338 0.96188 1.02011 1.02527 1.21695 0.93090 0.97826 0.89618 0.90854 1.21574 0.96915 0.98943 0.95696 1.18711 0.91591 0.94055 0.94548 1.21811 0.92189 1.39333 1.04773 0.92752 1.25928 0.97384 0.96120 1.00280 1.70125 1.02171 1.47914 1.36949 0.85546 0.77624 0.78846 0.79613 1.19827 1.20847 1.18866 1.62294 1.60094 1.01882 1.01985 1.22056 0.97652 0.89445 0.97457 1.22083 0.96962 0.97908 0.89315 1.62249 1.59401 1.02127 1.01579 1.21064 0.96079 0.92450 0.93677 1.19805 0.96350 0.94236 0.98273 1.21211 0.94345 0.98378 0.98625 1.21458 1.00571 0.92527 0.99894 1.21457 0.95799 0.99720 0.97569 1.21369 0.96390 0.97555 0.99592 1.21215 1.00398 0.93344 0.99905 1.22235 0.97256 0.88267 0.98468 1.21672 0.97909 0.93809 0.88989 0.92837 1.21813 1.00966 0.94390 1.02682 0.91644 0.91628 0.92676 0.93399 0.93084 1.00320 0.98404 0.93081 0.93644 0.91820 0.89891 0.96464 0.94800 0.88196 0.84837 0.83954 0.84149 0.84983 0.87021 0.88028 0.95810 0.92351 0.89820 0.93874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.69 8.50 71.98 0.61 -4.08 16 2 C 0.09 2.97 2.03 44.91 0.09 3.06 16 3 H 0.07 2.65 6.22 -2.38 -0.01 2.63 16 4 C -0.09 -3.98 4.36 30.59 0.13 -3.84 16 5 C 0.05 2.63 4.77 29.85 0.14 2.78 16 6 C -0.54 -32.02 9.11 25.60 0.23 -31.78 16 7 H 0.05 3.09 7.74 -2.91 -0.02 3.06 16 8 C 0.00 0.02 5.46 84.66 0.46 0.48 16 9 N -0.93 -58.59 13.29 21.45 0.28 -58.30 16 10 Si 0.96 45.65 29.54 68.60 2.03 47.67 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 14 N -0.54 -18.33 3.97 -845.41 -3.36 -21.68 16 15 C 0.06 2.04 4.84 86.31 0.42 2.45 16 16 C 0.07 1.99 5.25 86.31 0.45 2.44 16 17 N -0.53 -13.49 4.70 -900.29 -4.23 -17.72 16 18 C 0.09 2.06 5.12 85.56 0.44 2.49 16 19 C -0.09 -1.86 4.89 -19.87 -0.10 -1.96 16 20 C -0.11 -2.00 9.70 22.27 0.22 -1.78 16 21 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 22 C -0.13 -2.15 10.05 22.27 0.22 -1.92 16 23 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 24 C -0.13 -2.90 7.91 22.27 0.18 -2.72 16 25 C 0.07 1.66 4.89 86.31 0.42 2.08 16 26 C 0.08 2.31 2.15 44.93 0.10 2.40 16 27 H 0.05 1.40 6.64 -2.39 -0.02 1.38 16 28 C -0.14 -3.57 8.63 71.98 0.62 -2.94 16 29 H 0.06 1.57 6.74 -2.39 -0.02 1.56 16 30 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.05 1.51 6.29 -2.39 -0.02 1.49 16 32 H 0.05 2.01 6.19 -2.39 -0.01 2.00 16 33 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 34 H -0.02 -1.30 8.14 -2.38 -0.02 -1.32 16 35 H 0.00 -0.15 7.83 -2.39 -0.02 -0.17 16 36 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 37 H 0.05 1.40 6.41 -2.39 -0.02 1.38 16 38 H 0.06 2.39 6.07 -2.38 -0.01 2.38 16 39 H 0.08 2.39 5.95 -2.39 -0.01 2.38 16 40 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.03 0.80 8.07 -2.39 -0.02 0.78 16 42 H 0.10 1.77 7.97 -2.39 -0.02 1.75 16 43 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 44 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 45 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 46 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 47 H 0.11 2.58 7.99 -2.91 -0.02 2.56 16 48 H 0.10 1.98 8.07 -2.39 -0.02 1.96 16 49 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 50 H 0.06 1.47 6.70 -2.38 -0.02 1.45 16 51 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 52 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -68.15 392.98 0.67 -67.47 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.86 Total: 19.60 kcal Atomic # 6 Polarization: -42.13 SS G_CDS: 5.09 Total: -37.04 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -7.30 Total: -97.71 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -68.15 0.67 -67.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507569.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.472 kcal (2) G-P(sol) polarization free energy of solvation -68.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds