Wall clock time and date at job start Tue Mar 31 2020 11:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47432 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46890 * 120.00210 * 10 8 6 13 13 H 1.48501 * 109.47062 * 240.00257 * 10 8 6 14 14 N 1.46910 * 109.46729 * 240.00732 * 2 1 3 15 15 C 1.46950 * 110.99982 * 296.19884 * 14 2 1 16 16 C 1.53049 * 109.36784 * 183.19042 * 15 14 2 17 17 N 1.46959 * 109.36242 * 301.60186 * 16 15 14 18 18 C 1.46900 * 110.99723 * 183.18568 * 17 16 15 19 19 C 1.50697 * 109.47276 * 46.20014 * 18 17 16 20 20 C 1.38237 * 119.99758 * 269.72290 * 19 18 17 21 21 C 1.38238 * 119.99427 * 179.76413 * 20 19 18 22 22 C 1.38227 * 120.00262 * 0.49145 * 21 20 19 23 23 C 1.38238 * 120.00128 * 359.78386 * 22 21 20 24 24 C 1.38230 * 119.99816 * 359.96066 * 23 22 21 25 25 C 1.46960 * 110.88207 * 59.31639 * 17 16 15 26 26 C 1.46954 * 110.99823 * 60.00000 * 14 2 1 27 27 H 1.09002 * 109.49165 * 296.77361 * 26 14 2 28 28 C 1.52999 * 109.48989 * 56.82541 * 26 14 2 29 29 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 30 30 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 32 32 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 33 33 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.48930 * 303.16244 * 15 14 2 38 38 H 1.08999 * 109.48851 * 63.22331 * 15 14 2 39 39 H 1.08995 * 109.49090 * 181.63375 * 16 15 14 40 40 H 1.09002 * 109.48417 * 61.56500 * 16 15 14 41 41 H 1.09003 * 109.46768 * 166.20159 * 18 17 16 42 42 H 1.09002 * 109.47156 * 286.19535 * 18 17 16 43 43 H 1.07995 * 120.00274 * 0.02562 * 20 19 18 44 44 H 1.08002 * 119.99693 * 180.25404 * 21 20 19 45 45 H 1.07999 * 120.00184 * 179.76880 * 22 21 20 46 46 H 1.08004 * 119.99943 * 179.97438 * 23 22 21 47 47 H 1.07999 * 120.00194 * 179.97438 * 24 23 22 48 48 H 1.08997 * 109.48975 * 180.71300 * 25 17 16 49 49 H 1.08997 * 109.50600 * 60.65684 * 25 17 16 50 50 H 1.09003 * 109.47369 * 59.99761 * 28 26 14 51 51 H 1.09010 * 109.47136 * 179.97438 * 28 26 14 52 52 H 1.09001 * 109.46773 * 299.99536 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 6 4.0671 -1.3235 2.5442 7 1 3.3687 -1.8041 3.2133 8 6 5.4185 -1.3605 2.8154 9 7 6.2690 -0.7758 2.0005 10 14 6.0411 -2.2412 4.3406 11 1 4.8912 -2.8129 5.0863 12 1 6.9629 -3.3343 3.9393 13 1 6.7644 -1.2773 5.2082 14 7 2.0196 -0.6924 -1.1996 15 6 1.6240 -2.1076 -1.1891 16 6 2.2190 -2.8100 -2.4119 17 7 1.7478 -2.1435 -3.6339 18 6 2.2374 -2.8359 -4.8334 19 6 2.0311 -4.3203 -4.6759 20 6 3.0227 -5.0997 -4.1101 21 6 2.8314 -6.4607 -3.9612 22 6 1.6528 -7.0437 -4.3874 23 6 0.6635 -6.2652 -4.9585 24 6 0.8526 -4.9035 -5.1025 25 6 2.1433 -0.7281 -3.6444 26 6 1.5483 -0.0258 -2.4216 27 1 0.4604 -0.0762 -2.4669 28 6 1.9915 1.4385 -2.4076 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.7516 -1.7716 1.2053 33 1 1.6054 -0.2620 2.1368 34 1 3.8532 0.4368 1.3572 35 1 3.9994 -1.0729 0.4257 36 1 7.2196 -0.8015 2.1915 37 1 1.9951 -2.5822 -0.2807 38 1 0.5370 -2.1816 -1.2204 39 1 1.9030 -3.8531 -2.4217 40 1 3.3069 -2.7596 -2.3666 41 1 1.6879 -2.4832 -5.7062 42 1 3.2994 -2.6285 -4.9646 43 1 3.9450 -4.6448 -3.7805 44 1 3.6044 -7.0691 -3.5154 45 1 1.5048 -8.1076 -4.2745 46 1 -0.2573 -6.7208 -5.2919 47 1 0.0799 -4.2952 -5.5491 48 1 1.7722 -0.2535 -4.5527 49 1 3.2303 -0.6538 -3.6133 50 1 3.0794 1.4885 -2.3631 51 1 1.6421 1.9325 -3.3143 52 1 1.5688 1.9376 -1.5356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172507570.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:48 Heat of formation + Delta-G solvation = 12.454473 kcal Electronic energy + Delta-G solvation = -27537.627279 eV Core-core repulsion = 24114.799382 eV Total energy + Delta-G solvation = -3422.827897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.16573 -40.04802 -37.67009 -35.53262 -34.17763 -32.94551 -32.09129 -31.76277 -30.72518 -28.40092 -27.42281 -27.03673 -25.14425 -23.67350 -23.43183 -22.92813 -21.65790 -21.42289 -19.73291 -18.37882 -17.62795 -17.55275 -16.61595 -16.46462 -16.39010 -16.18485 -15.76477 -15.54462 -15.44895 -15.03134 -14.64441 -14.43429 -14.24617 -14.07246 -13.75802 -13.59583 -13.50863 -13.16619 -13.15086 -13.05257 -12.89448 -12.79847 -12.68675 -12.50805 -12.34080 -12.29838 -11.98334 -11.84426 -11.71814 -11.65956 -11.46527 -11.21824 -11.10591 -10.86967 -10.50110 -9.78577 -9.73667 -9.29797 -8.95638 -8.14679 -6.25100 0.41979 0.52518 1.38436 1.38563 1.51744 2.42351 2.73001 3.01266 3.15909 3.17832 3.74138 3.85427 3.96821 3.97822 4.13554 4.17366 4.24589 4.29869 4.32957 4.35905 4.39276 4.45059 4.47885 4.49980 4.62974 4.71491 4.72962 4.75667 4.79500 4.80725 4.87173 4.92442 4.94924 5.00937 5.06261 5.12244 5.14829 5.18438 5.23033 5.32352 5.36322 5.51028 5.57868 5.59341 5.64503 5.70887 5.87808 5.98196 5.99948 6.02612 6.14358 6.31557 6.36483 6.41964 6.94719 7.43161 8.96663 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010529 B = 0.003850 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.791917 B = 7271.346741 C = 8937.401938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.086 3.914 3 H 0.073 0.927 4 C -0.095 4.095 5 C 0.045 3.955 6 C -0.541 4.541 7 H 0.054 0.946 8 C 0.001 3.999 9 N -0.931 5.931 10 Si 0.958 3.042 11 H -0.263 1.263 12 H -0.279 1.279 13 H -0.278 1.278 14 N -0.538 5.538 15 C 0.061 3.939 16 C 0.069 3.931 17 N -0.529 5.529 18 C 0.095 3.905 19 C -0.092 4.092 20 C -0.129 4.129 21 C -0.132 4.132 22 C -0.126 4.126 23 C -0.126 4.126 24 C -0.107 4.107 25 C 0.065 3.935 26 C 0.084 3.916 27 H 0.056 0.944 28 C -0.141 4.141 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.050 0.950 34 H -0.022 1.022 35 H 0.000 1.000 36 H 0.260 0.740 37 H 0.063 0.937 38 H 0.044 0.956 39 H 0.081 0.919 40 H 0.015 0.985 41 H 0.102 0.898 42 H 0.035 0.965 43 H 0.108 0.892 44 H 0.130 0.870 45 H 0.141 0.859 46 H 0.144 0.856 47 H 0.136 0.864 48 H 0.102 0.898 49 H 0.023 0.977 50 H 0.043 0.957 51 H 0.083 0.917 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.728 -5.960 -17.247 22.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 H 0.091 0.909 4 C -0.133 4.133 5 C 0.008 3.992 6 C -0.579 4.579 7 H 0.072 0.928 8 C -0.196 4.196 9 N -0.572 5.572 10 Si 0.783 3.217 11 H -0.187 1.187 12 H -0.205 1.205 13 H -0.204 1.204 14 N -0.263 5.263 15 C -0.067 4.067 16 C -0.059 4.059 17 N -0.253 5.253 18 C -0.032 4.032 19 C -0.092 4.092 20 C -0.148 4.148 21 C -0.150 4.150 22 C -0.144 4.144 23 C -0.143 4.143 24 C -0.125 4.125 25 C -0.063 4.063 26 C -0.025 4.025 27 H 0.073 0.927 28 C -0.199 4.199 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.069 0.931 34 H -0.004 1.004 35 H 0.018 0.982 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.033 0.967 41 H 0.120 0.880 42 H 0.054 0.946 43 H 0.126 0.874 44 H 0.148 0.852 45 H 0.159 0.841 46 H 0.162 0.838 47 H 0.154 0.846 48 H 0.120 0.880 49 H 0.042 0.958 50 H 0.063 0.937 51 H 0.102 0.898 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.545 -5.910 -17.280 22.738 hybrid contribution 1.171 -0.313 1.085 1.627 sum -12.374 -6.223 -16.195 21.310 Atomic orbital electron populations 1.22340 0.96133 1.01990 1.02581 1.21692 0.93138 0.97853 0.89559 0.90871 1.21599 0.96893 0.99055 0.95710 1.18757 0.91719 0.93953 0.94808 1.21815 0.92454 1.34289 1.09341 0.92766 1.25916 0.97398 0.96470 0.99859 1.70132 1.02515 1.45650 1.38909 0.85502 0.78420 0.78340 0.79401 1.18683 1.20530 1.20380 1.62277 1.60125 1.01939 1.01963 1.22071 0.97977 0.89076 0.97551 1.22071 0.96438 0.98110 0.89317 1.62388 1.59061 1.02274 1.01579 1.21121 0.98607 0.89849 0.93619 1.19824 0.95010 0.94951 0.99431 1.21209 0.99101 0.94741 0.99721 1.21355 0.98673 0.94721 1.00258 1.21459 0.93542 1.01041 0.98343 1.21473 0.99878 0.93806 0.99180 1.21231 0.96462 0.95372 0.99436 1.22239 0.97641 0.87862 0.98526 1.21692 0.97718 0.94121 0.88936 0.92671 1.21828 1.01266 0.94150 1.02680 0.91461 0.92814 0.91607 0.93239 0.93087 1.00351 0.98205 0.93084 0.91855 0.93744 0.90035 0.96670 0.87971 0.94650 0.87390 0.85223 0.84120 0.83786 0.84582 0.88006 0.95845 0.93744 0.89785 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.68 8.50 71.98 0.61 -4.06 16 2 C 0.09 2.97 1.95 44.91 0.09 3.06 16 3 H 0.07 2.65 6.25 -2.39 -0.01 2.64 16 4 C -0.09 -4.04 4.32 30.59 0.13 -3.91 16 5 C 0.04 2.45 4.86 29.85 0.15 2.60 16 6 C -0.54 -31.91 9.11 25.60 0.23 -31.68 16 7 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 8 C 0.00 0.06 5.46 84.66 0.46 0.52 16 9 N -0.93 -58.62 13.29 21.45 0.28 -58.34 16 10 Si 0.96 45.69 29.54 68.60 2.03 47.72 16 11 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 14 N -0.54 -18.40 4.01 -845.42 -3.39 -21.79 16 15 C 0.06 2.05 4.84 86.31 0.42 2.47 16 16 C 0.07 2.12 4.65 86.31 0.40 2.52 16 17 N -0.53 -13.51 4.85 -900.27 -4.37 -17.88 16 18 C 0.09 2.06 5.44 85.56 0.47 2.53 16 19 C -0.09 -2.03 4.13 -19.87 -0.08 -2.11 16 20 C -0.13 -3.06 7.87 22.27 0.18 -2.89 16 21 C -0.13 -2.77 10.05 22.27 0.22 -2.55 16 22 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 23 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 24 C -0.11 -2.03 9.70 22.27 0.22 -1.81 16 25 C 0.07 1.65 4.87 86.31 0.42 2.07 16 26 C 0.08 2.27 2.07 44.92 0.09 2.36 16 27 H 0.06 1.43 6.48 -2.39 -0.02 1.41 16 28 C -0.14 -3.54 8.86 71.98 0.64 -2.90 16 29 H 0.07 1.61 6.48 -2.38 -0.02 1.59 16 30 H 0.05 1.47 6.56 -2.39 -0.02 1.45 16 31 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.05 2.09 6.00 -2.39 -0.01 2.08 16 33 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 34 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 35 H 0.00 -0.03 7.75 -2.39 -0.02 -0.05 16 36 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 37 H 0.06 2.44 5.95 -2.39 -0.01 2.43 16 38 H 0.04 1.38 6.56 -2.39 -0.02 1.37 16 39 H 0.08 2.45 5.86 -2.39 -0.01 2.43 16 40 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.10 1.79 8.09 -2.39 -0.02 1.77 16 42 H 0.04 0.82 8.02 -2.39 -0.02 0.80 16 43 H 0.11 2.73 8.06 -2.91 -0.02 2.71 16 44 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 45 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 46 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 47 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 48 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 52 H 0.06 1.48 6.36 -2.39 -0.02 1.46 16 Total: -1.00 -68.12 391.60 0.50 -67.62 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.86 Total: 20.41 kcal Atomic # 6 Polarization: -42.83 SS G_CDS: 5.09 Total: -37.74 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -7.47 Total: -98.01 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -68.12 0.50 -67.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507570.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.071 kcal (2) G-P(sol) polarization free energy of solvation -68.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds