Wall clock time and date at job start Tue Mar 31 2020 11:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47117 * 2 1 4 4 C 1.52995 * 109.47263 * 240.00269 * 2 1 3 5 5 C 1.53001 * 109.47461 * 177.20185 * 4 2 1 6 6 C 1.50696 * 109.47500 * 186.29962 * 5 4 2 7 7 H 1.08005 * 120.00028 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00009 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99991 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00282 * 359.97438 * 8 6 5 11 11 H 1.48508 * 109.46686 * 90.00271 * 10 8 6 12 12 H 1.48495 * 109.47639 * 210.00145 * 10 8 6 13 13 H 1.48506 * 109.47007 * 330.00687 * 10 8 6 14 14 N 1.46898 * 109.47063 * 119.99966 * 2 1 3 15 15 C 1.46950 * 111.00064 * 83.73609 * 14 2 1 16 16 C 1.53050 * 109.36783 * 183.18921 * 15 14 2 17 17 N 1.46964 * 109.37853 * 301.61216 * 16 15 14 18 18 C 1.46901 * 111.01515 * 183.16845 * 17 16 15 19 19 C 1.50694 * 109.47409 * 46.18434 * 18 17 16 20 20 C 1.38243 * 120.00057 * 269.72549 * 19 18 17 21 21 C 1.38232 * 120.00142 * 179.76230 * 20 19 18 22 22 C 1.38233 * 119.99760 * 0.49526 * 21 20 19 23 23 C 1.38235 * 120.00245 * 359.77855 * 22 21 20 24 24 C 1.38233 * 120.00217 * 89.99941 * 19 18 17 25 25 C 1.46946 * 110.88189 * 59.28318 * 17 16 15 26 26 C 1.46961 * 110.99838 * 207.53598 * 14 2 1 27 27 H 1.09001 * 109.48384 * 296.77553 * 26 14 2 28 28 C 1.52994 * 109.50589 * 56.83480 * 26 14 2 29 29 H 1.09000 * 109.47140 * 304.97027 * 1 2 3 30 30 H 1.09004 * 109.47070 * 64.96714 * 1 2 3 31 31 H 1.09000 * 109.46940 * 184.96787 * 1 2 3 32 32 H 1.09009 * 109.47214 * 297.20028 * 4 2 1 33 33 H 1.09001 * 109.47518 * 57.19503 * 4 2 1 34 34 H 1.08995 * 109.46956 * 306.30163 * 5 4 2 35 35 H 1.09001 * 109.46897 * 66.29502 * 5 4 2 36 36 H 0.96993 * 119.99849 * 179.97438 * 9 8 6 37 37 H 1.09003 * 109.48674 * 303.15479 * 15 14 2 38 38 H 1.09004 * 109.49308 * 63.19884 * 15 14 2 39 39 H 1.09001 * 109.48894 * 61.55833 * 16 15 14 40 40 H 1.08996 * 109.49282 * 181.63149 * 16 15 14 41 41 H 1.08996 * 109.47060 * 166.18876 * 18 17 16 42 42 H 1.09000 * 109.46826 * 286.18678 * 18 17 16 43 43 H 1.08002 * 119.99679 * 0.02562 * 20 19 18 44 44 H 1.07998 * 120.00181 * 180.25139 * 21 20 19 45 45 H 1.07999 * 119.99916 * 179.76472 * 22 21 20 46 46 H 1.07993 * 120.00102 * 179.97438 * 23 22 21 47 47 H 1.07994 * 119.99596 * 0.02562 * 24 19 18 48 48 H 1.09003 * 109.48653 * 180.73537 * 25 17 16 49 49 H 1.09005 * 109.49450 * 60.69509 * 25 17 16 50 50 H 1.09003 * 109.46983 * 173.96469 * 28 26 14 51 51 H 1.09006 * 109.46957 * 293.95732 * 28 26 14 52 52 H 1.08994 * 109.47754 * 53.96125 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5684 -0.6605 -1.2850 6 6 4.0636 -1.2328 -2.5881 7 1 3.3587 -1.6033 -3.3178 8 6 5.4165 -1.2845 -2.8485 9 7 5.8487 -1.7836 -3.9860 10 14 6.6358 -0.6445 -1.5863 11 1 7.0225 -1.7463 -0.6687 12 1 7.8440 -0.1316 -2.2807 13 1 6.0100 0.4530 -0.8057 14 7 2.0197 -0.6925 1.1994 15 6 2.0541 -2.1467 0.9908 16 6 2.4925 -2.8350 2.2856 17 7 3.8149 -2.3312 2.6821 18 6 4.3044 -3.0234 3.8818 19 6 4.0965 -4.5077 3.7253 20 6 2.9199 -5.0903 4.1580 21 6 2.7272 -6.4511 4.0100 22 6 3.7153 -7.2309 3.4387 23 6 4.8942 -6.6493 3.0112 24 6 5.0847 -5.2876 3.1543 25 6 3.7806 -0.8769 2.8902 26 6 3.3422 -0.1887 1.5954 27 1 4.0639 -0.4032 0.8071 28 6 3.2666 1.3227 1.8209 29 1 -0.3633 0.5890 0.8421 30 1 -0.3633 0.4349 -0.9312 31 1 -0.3633 -1.0238 0.0890 32 1 1.7183 -1.7624 -1.2245 33 1 1.6363 -0.2372 -2.1385 34 1 3.8930 0.3763 -1.1968 35 1 3.9745 -1.2400 -0.4559 36 1 6.8005 -1.8196 -4.1693 37 1 1.0607 -2.4975 0.7108 38 1 2.7609 -2.3834 0.1955 39 1 1.7708 -2.6205 3.0738 40 1 2.5467 -3.9117 2.1248 41 1 5.3666 -2.8170 4.0124 42 1 3.7555 -2.6697 4.7546 43 1 2.1495 -4.4815 4.6078 44 1 1.8063 -6.9056 4.3444 45 1 3.5663 -8.2947 3.3266 46 1 5.6662 -7.2586 2.5653 47 1 6.0058 -4.8332 2.8207 48 1 4.7739 -0.5262 3.1702 49 1 3.0737 -0.6398 3.6854 50 1 4.2176 1.6789 2.2171 51 1 3.0578 1.8213 0.8744 52 1 2.4709 1.5447 2.5319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507571.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:52 Heat of formation + Delta-G solvation = 42.175346 kcal Electronic energy + Delta-G solvation = -28237.153746 eV Core-core repulsion = 24815.614643 eV Total energy + Delta-G solvation = -3421.539103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.13462 -39.12920 -36.53900 -33.49718 -32.68505 -31.79477 -30.93012 -30.71323 -29.93056 -27.23895 -26.45570 -25.15578 -23.99504 -22.69992 -22.18889 -21.36424 -20.54106 -19.68755 -18.92773 -16.79096 -16.57841 -16.33930 -15.54441 -15.36621 -15.09518 -14.64842 -14.53602 -14.26152 -14.12592 -13.80048 -13.43161 -13.27415 -12.93185 -12.82776 -12.60480 -12.53356 -12.12682 -12.03864 -11.86463 -11.76594 -11.56083 -11.53143 -11.24369 -11.13842 -11.02382 -10.90309 -10.80886 -10.58114 -10.23269 -10.09870 -9.85965 -9.60667 -9.48874 -9.14789 -8.93335 -8.83141 -8.49253 -8.14782 -7.59704 -6.00777 -3.97860 1.27561 1.37499 3.34664 3.40959 3.43665 3.65049 4.19087 4.26791 4.48805 4.66852 4.79141 4.95154 5.04782 5.06066 5.22964 5.27115 5.32027 5.34338 5.44749 5.48272 5.55326 5.63103 5.65020 5.67812 5.72706 5.78602 5.83362 5.86310 5.90282 5.95155 6.00373 6.03633 6.09778 6.21172 6.25882 6.32617 6.39865 6.43007 6.45504 6.47676 6.52711 6.58525 6.61725 6.73391 6.94083 6.94842 7.14446 7.18903 7.35231 7.42574 7.56526 7.63204 7.85065 8.58196 9.04447 9.62512 11.12873 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010270 B = 0.004988 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.687336 B = 5612.567545 C = 6800.113170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.066 3.934 3 H 0.079 0.921 4 C -0.132 4.132 5 C -0.020 4.020 6 C -0.517 4.517 7 H 0.069 0.931 8 C 0.068 3.932 9 N -0.905 5.905 10 Si 0.875 3.125 11 H -0.274 1.274 12 H -0.290 1.290 13 H -0.265 1.265 14 N -0.524 5.524 15 C 0.044 3.956 16 C 0.060 3.940 17 N -0.531 5.531 18 C 0.094 3.906 19 C -0.079 4.079 20 C -0.114 4.114 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.097 4.097 25 C 0.068 3.932 26 C 0.058 3.942 27 H 0.082 0.918 28 C -0.143 4.143 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.011 0.989 35 H 0.027 0.973 36 H 0.262 0.738 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.033 0.967 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.121 0.879 47 H 0.124 0.876 48 H 0.073 0.927 49 H 0.037 0.963 50 H 0.055 0.945 51 H 0.062 0.938 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.318 -3.536 18.907 20.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.042 4.042 3 H 0.097 0.903 4 C -0.171 4.171 5 C -0.056 4.056 6 C -0.555 4.555 7 H 0.087 0.913 8 C -0.133 4.133 9 N -0.544 5.544 10 Si 0.703 3.297 11 H -0.200 1.200 12 H -0.216 1.216 13 H -0.190 1.190 14 N -0.249 5.249 15 C -0.084 4.084 16 C -0.068 4.068 17 N -0.256 5.256 18 C -0.033 4.033 19 C -0.080 4.080 20 C -0.132 4.132 21 C -0.141 4.141 22 C -0.140 4.140 23 C -0.138 4.138 24 C -0.115 4.115 25 C -0.060 4.060 26 C -0.051 4.051 27 H 0.099 0.901 28 C -0.201 4.201 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.029 0.971 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.058 0.942 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.142 0.858 48 H 0.091 0.909 49 H 0.055 0.945 50 H 0.074 0.926 51 H 0.080 0.920 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.158 -3.552 18.815 20.113 hybrid contribution 0.758 0.210 0.437 0.900 sum -5.400 -3.342 19.251 20.271 Atomic orbital electron populations 1.21723 0.95327 1.01374 1.00639 1.21960 0.94712 0.98539 0.88957 0.90265 1.22152 0.98695 0.99961 0.96293 1.19879 0.91696 0.96359 0.97695 1.21153 0.92595 1.40188 1.01558 0.91294 1.25005 0.98407 0.94754 0.95123 1.69921 1.14545 1.46349 1.23623 0.86838 0.80859 0.80008 0.82011 1.19977 1.21630 1.18997 1.62481 1.24460 1.03979 1.33966 1.22335 1.01217 0.87893 0.96992 1.22262 0.88285 0.99474 0.96752 1.62219 1.26542 1.04122 1.32674 1.21061 1.01053 0.89661 0.91491 1.19763 0.94418 0.95093 0.98701 1.21053 0.96807 0.95011 1.00353 1.21075 0.99084 0.93871 1.00105 1.21136 0.94032 0.99762 0.99108 1.21175 0.97701 0.95084 0.99826 1.21089 0.99244 0.93552 0.97663 1.22176 1.00136 0.86786 0.96932 1.22071 0.91847 0.93999 0.97146 0.90090 1.21856 1.01374 0.94890 1.02009 0.93077 0.92821 0.93132 0.92371 0.92503 0.97079 0.95509 0.92867 0.90937 0.91088 0.94927 0.90189 0.90029 0.94213 0.86487 0.86284 0.86313 0.86077 0.85814 0.90896 0.94506 0.92585 0.91958 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.43 37.16 0.35 -1.50 16 2 C 0.07 1.09 2.38 -67.72 -0.16 0.93 16 3 H 0.08 1.31 5.37 -51.93 -0.28 1.03 16 4 C -0.13 -2.64 4.10 -26.73 -0.11 -2.75 16 5 C -0.02 -0.46 2.24 -27.88 -0.06 -0.53 16 6 C -0.52 -14.93 9.66 -34.44 -0.33 -15.27 16 7 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 8 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 9 N -0.91 -28.41 13.96 55.43 0.77 -27.64 16 10 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 11 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 14 N -0.52 -8.35 4.36 -218.57 -0.95 -9.30 16 15 C 0.04 0.72 4.17 -3.77 -0.02 0.70 16 16 C 0.06 0.88 4.65 -3.76 -0.02 0.86 16 17 N -0.53 -7.87 4.85 -235.92 -1.14 -9.02 16 18 C 0.09 1.16 5.44 -4.98 -0.03 1.13 16 19 C -0.08 -0.98 4.13 -104.63 -0.43 -1.41 16 20 C -0.11 -1.27 7.87 -39.58 -0.31 -1.58 16 21 C -0.12 -1.28 10.05 -39.59 -0.40 -1.67 16 22 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 23 C -0.12 -1.37 10.05 -39.58 -0.40 -1.76 16 24 C -0.10 -1.22 9.70 -39.58 -0.38 -1.60 16 25 C 0.07 0.97 4.86 -3.77 -0.02 0.95 16 26 C 0.06 0.93 2.20 -67.66 -0.15 0.78 16 27 H 0.08 1.62 4.42 -51.93 -0.23 1.39 16 28 C -0.14 -2.01 8.81 37.15 0.33 -1.68 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.69 7.23 -51.93 -0.38 0.32 16 32 H 0.06 1.17 6.25 -51.92 -0.32 0.85 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.01 0.27 7.14 -51.93 -0.37 -0.10 16 35 H 0.03 0.65 3.58 -51.93 -0.19 0.47 16 36 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 37 H 0.07 1.12 7.09 -51.93 -0.37 0.75 16 38 H 0.07 1.42 4.82 -51.93 -0.25 1.17 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 1.19 5.86 -51.93 -0.30 0.88 16 41 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 42 H 0.04 0.45 8.02 -51.93 -0.42 0.03 16 43 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 45 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 46 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 47 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 48 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 49 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.06 0.92 6.19 -51.93 -0.32 0.59 16 52 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 382.41 15.07 5.76 5.76 Total: -1.00 -31.19 382.41 -11.79 -42.98 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -8.93 Total: 3.81 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -2.63 Total: -24.15 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -1.32 Total: -45.95 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.19 -11.79 -42.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507571.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.157 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds