Wall clock time and date at job start Tue Mar 31 2020 11:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47117 * 2 1 4 4 C 1.52995 * 109.47263 * 240.00269 * 2 1 3 5 5 C 1.53001 * 109.47461 * 177.20185 * 4 2 1 6 6 C 1.50696 * 109.47500 * 186.29962 * 5 4 2 7 7 H 1.08005 * 120.00028 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00009 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99991 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00282 * 359.97438 * 8 6 5 11 11 H 1.48508 * 109.46686 * 90.00271 * 10 8 6 12 12 H 1.48495 * 109.47639 * 210.00145 * 10 8 6 13 13 H 1.48506 * 109.47007 * 330.00687 * 10 8 6 14 14 N 1.46898 * 109.47063 * 119.99966 * 2 1 3 15 15 C 1.46950 * 111.00064 * 83.73609 * 14 2 1 16 16 C 1.53050 * 109.36783 * 183.18921 * 15 14 2 17 17 N 1.46964 * 109.37853 * 301.61216 * 16 15 14 18 18 C 1.46901 * 111.01515 * 183.16845 * 17 16 15 19 19 C 1.50694 * 109.47409 * 46.18434 * 18 17 16 20 20 C 1.38243 * 120.00057 * 269.72549 * 19 18 17 21 21 C 1.38232 * 120.00142 * 179.76230 * 20 19 18 22 22 C 1.38233 * 119.99760 * 0.49526 * 21 20 19 23 23 C 1.38235 * 120.00245 * 359.77855 * 22 21 20 24 24 C 1.38233 * 120.00217 * 89.99941 * 19 18 17 25 25 C 1.46946 * 110.88189 * 59.28318 * 17 16 15 26 26 C 1.46961 * 110.99838 * 207.53598 * 14 2 1 27 27 H 1.09001 * 109.48384 * 296.77553 * 26 14 2 28 28 C 1.52994 * 109.50589 * 56.83480 * 26 14 2 29 29 H 1.09000 * 109.47140 * 304.97027 * 1 2 3 30 30 H 1.09004 * 109.47070 * 64.96714 * 1 2 3 31 31 H 1.09000 * 109.46940 * 184.96787 * 1 2 3 32 32 H 1.09009 * 109.47214 * 297.20028 * 4 2 1 33 33 H 1.09001 * 109.47518 * 57.19503 * 4 2 1 34 34 H 1.08995 * 109.46956 * 306.30163 * 5 4 2 35 35 H 1.09001 * 109.46897 * 66.29502 * 5 4 2 36 36 H 0.96993 * 119.99849 * 179.97438 * 9 8 6 37 37 H 1.09003 * 109.48674 * 303.15479 * 15 14 2 38 38 H 1.09004 * 109.49308 * 63.19884 * 15 14 2 39 39 H 1.09001 * 109.48894 * 61.55833 * 16 15 14 40 40 H 1.08996 * 109.49282 * 181.63149 * 16 15 14 41 41 H 1.08996 * 109.47060 * 166.18876 * 18 17 16 42 42 H 1.09000 * 109.46826 * 286.18678 * 18 17 16 43 43 H 1.08002 * 119.99679 * 0.02562 * 20 19 18 44 44 H 1.07998 * 120.00181 * 180.25139 * 21 20 19 45 45 H 1.07999 * 119.99916 * 179.76472 * 22 21 20 46 46 H 1.07993 * 120.00102 * 179.97438 * 23 22 21 47 47 H 1.07994 * 119.99596 * 0.02562 * 24 19 18 48 48 H 1.09003 * 109.48653 * 180.73537 * 25 17 16 49 49 H 1.09005 * 109.49450 * 60.69509 * 25 17 16 50 50 H 1.09003 * 109.46983 * 173.96469 * 28 26 14 51 51 H 1.09006 * 109.46957 * 293.95732 * 28 26 14 52 52 H 1.08994 * 109.47754 * 53.96125 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5684 -0.6605 -1.2850 6 6 4.0636 -1.2328 -2.5881 7 1 3.3587 -1.6033 -3.3178 8 6 5.4165 -1.2845 -2.8485 9 7 5.8487 -1.7836 -3.9860 10 14 6.6358 -0.6445 -1.5863 11 1 7.0225 -1.7463 -0.6687 12 1 7.8440 -0.1316 -2.2807 13 1 6.0100 0.4530 -0.8057 14 7 2.0197 -0.6925 1.1994 15 6 2.0541 -2.1467 0.9908 16 6 2.4925 -2.8350 2.2856 17 7 3.8149 -2.3312 2.6821 18 6 4.3044 -3.0234 3.8818 19 6 4.0965 -4.5077 3.7253 20 6 2.9199 -5.0903 4.1580 21 6 2.7272 -6.4511 4.0100 22 6 3.7153 -7.2309 3.4387 23 6 4.8942 -6.6493 3.0112 24 6 5.0847 -5.2876 3.1543 25 6 3.7806 -0.8769 2.8902 26 6 3.3422 -0.1887 1.5954 27 1 4.0639 -0.4032 0.8071 28 6 3.2666 1.3227 1.8209 29 1 -0.3633 0.5890 0.8421 30 1 -0.3633 0.4349 -0.9312 31 1 -0.3633 -1.0238 0.0890 32 1 1.7183 -1.7624 -1.2245 33 1 1.6363 -0.2372 -2.1385 34 1 3.8930 0.3763 -1.1968 35 1 3.9745 -1.2400 -0.4559 36 1 6.8005 -1.8196 -4.1693 37 1 1.0607 -2.4975 0.7108 38 1 2.7609 -2.3834 0.1955 39 1 1.7708 -2.6205 3.0738 40 1 2.5467 -3.9117 2.1248 41 1 5.3666 -2.8170 4.0124 42 1 3.7555 -2.6697 4.7546 43 1 2.1495 -4.4815 4.6078 44 1 1.8063 -6.9056 4.3444 45 1 3.5663 -8.2947 3.3266 46 1 5.6662 -7.2586 2.5653 47 1 6.0058 -4.8332 2.8207 48 1 4.7739 -0.5262 3.1702 49 1 3.0737 -0.6398 3.6854 50 1 4.2176 1.6789 2.2171 51 1 3.0578 1.8213 0.8744 52 1 2.4709 1.5447 2.5319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172507571.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:51 Heat of formation + Delta-G solvation = 23.274528 kcal Electronic energy + Delta-G solvation = -28237.973347 eV Core-core repulsion = 24815.614643 eV Total energy + Delta-G solvation = -3422.358704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.29515 -40.12380 -37.71321 -35.26150 -34.26411 -32.96053 -32.20339 -31.76794 -31.36054 -28.36357 -27.46055 -27.05452 -25.13515 -23.65612 -23.37357 -22.81697 -21.55915 -21.18366 -20.36536 -18.68940 -17.65214 -17.55126 -16.55751 -16.47911 -16.32245 -16.22608 -15.88574 -15.53748 -15.24316 -15.12563 -14.88735 -14.31056 -14.28290 -14.22416 -13.84963 -13.59318 -13.53000 -13.22683 -13.13366 -13.02293 -12.89959 -12.81156 -12.67111 -12.53017 -12.22994 -12.08818 -11.89852 -11.87321 -11.82792 -11.63264 -11.40916 -11.39637 -11.14741 -11.02580 -10.76373 -9.78637 -9.71050 -9.21960 -8.97653 -8.32775 -6.35144 0.42312 0.52314 1.29644 1.32159 1.42331 2.31714 2.74744 2.99527 3.03603 3.19735 3.75092 3.85769 3.96065 3.99367 4.15656 4.17296 4.25864 4.30322 4.36693 4.37790 4.38936 4.45453 4.52440 4.54419 4.62875 4.68109 4.72879 4.78774 4.80162 4.81914 4.84664 4.88829 4.94761 5.03578 5.09604 5.12253 5.13757 5.17796 5.20287 5.24532 5.35260 5.47026 5.52109 5.56873 5.58413 5.64073 5.68304 5.71733 6.05898 6.08190 6.14554 6.24877 6.30647 6.32408 6.72513 7.28997 8.84362 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010270 B = 0.004988 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.687336 B = 5612.567545 C = 6800.113170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.072 3.928 3 H 0.083 0.917 4 C -0.125 4.125 5 C -0.005 4.005 6 C -0.529 4.529 7 H 0.027 0.973 8 C 0.009 3.991 9 N -0.952 5.952 10 Si 0.944 3.056 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.245 1.245 14 N -0.510 5.510 15 C 0.046 3.954 16 C 0.072 3.928 17 N -0.555 5.555 18 C 0.099 3.901 19 C -0.092 4.092 20 C -0.118 4.118 21 C -0.126 4.126 22 C -0.127 4.127 23 C -0.133 4.133 24 C -0.120 4.120 25 C 0.073 3.927 26 C 0.052 3.948 27 H 0.041 0.959 28 C -0.138 4.138 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.009 0.991 35 H 0.030 0.970 36 H 0.265 0.735 37 H 0.080 0.920 38 H 0.029 0.971 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.131 0.869 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.131 0.869 47 H 0.115 0.885 48 H 0.082 0.918 49 H 0.052 0.948 50 H 0.068 0.932 51 H 0.051 0.949 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.283 -2.832 22.125 23.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.037 4.037 3 H 0.101 0.899 4 C -0.164 4.164 5 C -0.042 4.042 6 C -0.567 4.567 7 H 0.045 0.955 8 C -0.188 4.188 9 N -0.593 5.593 10 Si 0.767 3.233 11 H -0.195 1.195 12 H -0.209 1.209 13 H -0.168 1.168 14 N -0.235 5.235 15 C -0.082 4.082 16 C -0.056 4.056 17 N -0.280 5.280 18 C -0.028 4.028 19 C -0.092 4.092 20 C -0.136 4.136 21 C -0.143 4.143 22 C -0.145 4.145 23 C -0.151 4.151 24 C -0.138 4.138 25 C -0.055 4.055 26 C -0.056 4.056 27 H 0.059 0.941 28 C -0.196 4.196 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.027 0.973 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.074 0.926 43 H 0.148 0.852 44 H 0.161 0.839 45 H 0.158 0.842 46 H 0.149 0.851 47 H 0.133 0.867 48 H 0.100 0.900 49 H 0.070 0.930 50 H 0.087 0.913 51 H 0.070 0.930 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.139 -2.841 22.043 23.344 hybrid contribution 1.021 -0.105 -0.655 1.218 sum -6.118 -2.946 21.388 22.440 Atomic orbital electron populations 1.21653 0.92918 1.01902 1.01795 1.21945 0.96553 0.98032 0.87125 0.89915 1.22063 0.96093 1.00070 0.98170 1.19739 0.94287 0.95418 0.94759 1.21540 0.92254 1.39974 1.02891 0.95507 1.25930 1.00590 0.95030 0.97239 1.70071 1.15212 1.48070 1.25908 0.85751 0.78176 0.80001 0.79331 1.19547 1.20950 1.16839 1.62606 1.24347 1.03526 1.32972 1.22274 1.00506 0.88507 0.96895 1.22091 0.88718 0.98797 0.95945 1.62175 1.26655 1.04712 1.34430 1.21049 1.01226 0.89505 0.90976 1.19847 0.94934 0.95135 0.99283 1.21246 0.96604 0.95627 1.00133 1.21420 0.99884 0.93704 0.99328 1.21457 0.93570 1.01029 0.98431 1.21402 0.98658 0.94904 1.00103 1.21197 0.99455 0.94389 0.98796 1.22134 1.00984 0.86337 0.96061 1.22113 0.90693 0.95858 0.96951 0.94102 1.21818 1.02810 0.92961 1.02008 0.91225 0.92241 0.93051 0.93193 0.93558 0.97261 0.95252 0.92618 0.90184 0.95273 0.93465 0.90764 0.89932 0.92626 0.85150 0.83878 0.84151 0.85107 0.86684 0.90012 0.92997 0.91270 0.92960 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 9.43 71.98 0.68 -2.49 16 2 C 0.07 2.25 2.38 44.91 0.11 2.36 16 3 H 0.08 2.58 5.37 -2.39 -0.01 2.57 16 4 C -0.13 -5.06 4.10 30.59 0.13 -4.94 16 5 C -0.01 -0.25 2.24 29.85 0.07 -0.18 16 6 C -0.53 -31.81 9.66 25.60 0.25 -31.56 16 7 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16 8 C 0.01 0.53 5.47 84.65 0.46 0.99 16 9 N -0.95 -61.79 13.96 21.45 0.30 -61.49 16 10 Si 0.94 46.56 27.47 68.60 1.88 48.45 16 11 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 12 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 13 H -0.24 -11.18 6.54 99.48 0.65 -10.53 16 14 N -0.51 -15.34 4.36 -845.42 -3.69 -19.02 16 15 C 0.05 1.49 4.17 86.31 0.36 1.85 16 16 C 0.07 2.00 4.65 86.31 0.40 2.40 16 17 N -0.55 -15.56 4.85 -900.30 -4.37 -19.92 16 18 C 0.10 2.26 5.44 85.55 0.47 2.72 16 19 C -0.09 -2.14 4.13 -19.87 -0.08 -2.23 16 20 C -0.12 -2.38 7.87 22.27 0.18 -2.20 16 21 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 22 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 23 C -0.13 -2.95 10.05 22.27 0.22 -2.72 16 24 C -0.12 -2.99 9.70 22.27 0.22 -2.77 16 25 C 0.07 1.89 4.86 86.31 0.42 2.31 16 26 C 0.05 1.60 2.20 44.92 0.10 1.70 16 27 H 0.04 1.60 4.42 -2.39 -0.01 1.59 16 28 C -0.14 -3.48 8.81 71.98 0.63 -2.84 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.29 7.23 -2.39 -0.02 1.28 16 32 H 0.05 2.07 6.25 -2.38 -0.01 2.06 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.01 0.44 7.14 -2.39 -0.02 0.43 16 35 H 0.03 1.45 3.58 -2.39 -0.01 1.44 16 36 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 37 H 0.08 2.40 7.09 -2.39 -0.02 2.38 16 38 H 0.03 1.19 4.82 -2.38 -0.01 1.18 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 2.13 5.86 -2.39 -0.01 2.12 16 41 H 0.08 1.83 8.09 -2.39 -0.02 1.81 16 42 H 0.06 1.09 8.02 -2.39 -0.02 1.07 16 43 H 0.13 2.23 8.06 -2.91 -0.02 2.20 16 44 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 45 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 46 H 0.13 2.50 8.06 -2.91 -0.02 2.47 16 47 H 0.12 2.94 8.06 -2.91 -0.02 2.91 16 48 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 50 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.05 1.41 6.19 -2.38 -0.01 1.40 16 52 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -69.66 382.41 0.00 -69.66 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.82 Total: 24.25 kcal Atomic # 6 Polarization: -46.97 SS G_CDS: 5.05 Total: -41.92 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -7.76 Total: -100.44 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.88 Total: 48.45 kcal Total: -69.66 0.00 -69.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507571.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.935 kcal (2) G-P(sol) polarization free energy of solvation -69.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds