Wall clock time and date at job start Tue Mar 31 2020 10:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38100 * 120.03281 * 2 1 4 4 C 1.38295 * 120.06838 * 179.97438 * 3 2 1 5 5 C 1.38282 * 120.15145 * 0.27017 * 4 3 2 6 6 C 1.38102 * 120.07356 * 359.45183 * 5 4 3 7 7 C 1.50697 * 120.03849 * 180.26966 * 6 5 4 8 8 C 1.38911 * 119.92625 * 0.55057 * 6 5 4 9 9 N 1.39670 * 120.07692 * 179.69972 * 8 6 5 10 10 C 1.46958 * 110.99901 * 70.17870 * 9 8 6 11 11 C 1.53052 * 109.36480 * 176.81006 * 10 9 8 12 12 N 1.46956 * 109.36236 * 58.40095 * 11 10 9 13 13 C 1.46901 * 111.00059 * 176.80775 * 12 11 10 14 14 H 1.08997 * 109.47237 * 183.79841 * 13 12 11 15 15 C 1.53005 * 109.46942 * 63.80130 * 13 12 11 16 16 C 1.53008 * 109.47149 * 303.80426 * 13 12 11 17 17 C 1.53001 * 109.46814 * 294.99707 * 16 13 12 18 18 C 1.50701 * 109.46834 * 180.02562 * 17 16 13 19 19 H 1.07999 * 120.00093 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99924 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00184 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00022 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47260 * 89.99822 * 22 20 18 24 24 H 1.48499 * 109.47228 * 210.00464 * 22 20 18 25 25 H 1.48508 * 109.47286 * 330.00120 * 22 20 18 26 26 C 1.46954 * 110.88392 * 300.68179 * 12 11 10 27 27 C 1.46960 * 111.00343 * 306.37851 * 9 8 6 28 28 H 1.08996 * 109.47499 * 89.99866 * 1 2 3 29 29 H 1.08999 * 109.46798 * 209.99973 * 1 2 3 30 30 H 1.09005 * 109.46761 * 329.99571 * 1 2 3 31 31 H 1.08003 * 119.96860 * 359.95928 * 3 2 1 32 32 H 1.08006 * 119.92094 * 180.02562 * 4 3 2 33 33 H 1.08003 * 119.96083 * 179.70464 * 5 4 3 34 34 H 1.08997 * 109.47632 * 275.96662 * 7 6 5 35 35 H 1.09005 * 109.47017 * 35.96572 * 7 6 5 36 36 H 1.09005 * 109.47470 * 155.95987 * 7 6 5 37 37 H 1.09000 * 109.49097 * 296.78119 * 10 9 8 38 38 H 1.08999 * 109.48720 * 56.84590 * 10 9 8 39 39 H 1.08996 * 109.48916 * 298.43542 * 11 10 9 40 40 H 1.09002 * 109.50224 * 178.38077 * 11 10 9 41 41 H 1.08996 * 109.46949 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.46667 * 300.00355 * 15 13 12 43 43 H 1.09004 * 109.46883 * 59.99745 * 15 13 12 44 44 H 1.09003 * 109.47181 * 54.99633 * 16 13 12 45 45 H 1.08999 * 109.46602 * 174.99487 * 16 13 12 46 46 H 1.08999 * 109.46726 * 300.00067 * 17 16 13 47 47 H 1.08999 * 109.47191 * 60.00436 * 17 16 13 48 48 H 0.96997 * 120.00310 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.48310 * 299.35327 * 26 12 11 50 50 H 1.08999 * 109.50942 * 179.29978 * 26 12 11 51 51 H 1.08998 * 109.48761 * 303.15828 * 27 9 8 52 52 H 1.08999 * 109.48515 * 63.19555 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1956 0.0000 4 6 3.5812 1.1964 0.0005 5 6 4.2765 0.0012 -0.0046 6 6 3.5915 -1.1980 0.0012 7 6 4.3501 -2.5001 0.0018 8 6 2.2024 -1.2026 0.0006 9 7 1.5064 -2.4135 0.0001 10 6 1.6468 -3.1021 1.2908 11 6 0.8074 -4.3818 1.2771 12 7 1.2509 -5.2437 0.1726 13 6 0.5190 -6.5174 0.1721 14 1 0.9131 -7.1627 -0.6130 15 6 -0.9661 -6.2521 -0.0834 16 6 0.6884 -7.2035 1.5292 17 6 2.1574 -7.5810 1.7300 18 6 2.3241 -8.2573 3.0664 19 1 1.4679 -8.4036 3.7081 20 6 3.5696 -8.6901 3.4693 21 7 4.6122 -8.5124 2.6877 22 14 3.7764 -9.5278 5.1261 23 1 3.5928 -10.9928 4.9665 24 1 5.1375 -9.2539 5.6528 25 1 2.7630 -9.0027 6.0763 26 6 1.1107 -4.5552 -1.1180 27 6 1.9500 -3.2755 -1.1044 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6583 2.1309 -0.0007 32 1 4.1194 2.1329 0.0010 33 1 5.3565 0.0054 -0.0090 34 1 4.6214 -2.7631 -1.0206 35 1 5.2540 -2.3937 0.6017 36 1 3.7237 -3.2854 0.4249 37 1 2.6940 -3.3558 1.4556 38 1 1.3003 -2.4485 2.0912 39 1 -0.2432 -4.1261 1.1395 40 1 0.9325 -4.9092 2.2229 41 1 -1.5092 -7.1971 -0.0833 42 1 -1.3601 -5.6068 0.7017 43 1 -1.0867 -5.7633 -1.0502 44 1 0.3764 -6.5232 2.3218 45 1 0.0743 -8.1035 1.5604 46 1 2.4693 -8.2612 0.9375 47 1 2.7714 -6.6809 1.6988 48 1 5.4884 -8.8173 2.9710 49 1 0.0635 -4.3015 -1.2828 50 1 1.4569 -5.2086 -1.9188 51 1 1.8246 -2.7482 -2.0501 52 1 3.0007 -3.5308 -0.9670 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172509968.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:04 Heat of formation + Delta-G solvation = 45.274613 kcal Electronic energy + Delta-G solvation = -27837.780522 eV Core-core repulsion = 24416.375813 eV Total energy + Delta-G solvation = -3421.404709 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.76983 -38.73322 -36.30331 -33.60085 -33.37331 -31.93795 -30.88276 -30.14350 -29.12745 -27.67284 -26.65806 -25.39709 -24.67470 -23.39148 -21.63450 -21.18759 -20.73501 -20.11974 -18.79224 -16.94943 -16.14228 -15.93134 -15.70077 -15.17349 -14.97640 -14.70311 -14.41164 -14.20935 -13.87497 -13.75853 -13.54871 -13.25345 -13.07891 -12.96454 -12.70545 -12.44738 -12.27032 -11.89040 -11.78361 -11.69751 -11.60840 -11.48985 -11.34590 -11.26283 -11.01281 -10.91080 -10.86927 -10.69344 -10.44302 -10.34682 -10.04879 -9.59409 -9.20527 -8.89427 -8.60824 -8.59575 -8.25478 -8.21358 -7.72170 -5.90380 -3.91863 1.26168 1.33162 3.35660 3.42101 3.45128 3.63972 3.88405 4.27681 4.52430 4.78221 4.80432 4.91193 5.03134 5.19125 5.23876 5.35904 5.40082 5.45027 5.45877 5.47377 5.50585 5.53611 5.59890 5.63132 5.66250 5.70006 5.72838 5.75432 5.80603 5.83240 5.99286 6.04169 6.06337 6.15089 6.22735 6.28996 6.32047 6.37300 6.42705 6.46123 6.48863 6.60754 6.67483 6.85063 6.88868 7.00949 7.26284 7.45307 7.55009 7.61778 7.83351 8.04394 8.18931 8.54925 9.17022 9.71110 11.20390 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014582 B = 0.003529 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.665418 B = 7933.075969 C = 9023.623704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.062 4.062 3 C -0.127 4.127 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.103 4.103 7 C -0.140 4.140 8 C 0.090 3.910 9 N -0.498 5.498 10 C 0.052 3.948 11 C 0.055 3.945 12 N -0.518 5.518 13 C 0.082 3.918 14 H 0.078 0.922 15 C -0.184 4.184 16 C -0.106 4.106 17 C 0.031 3.969 18 C -0.520 4.520 19 H 0.050 0.950 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.885 3.115 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.275 1.275 26 C 0.056 3.944 27 C 0.038 3.962 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.048 0.952 44 H 0.049 0.951 45 H 0.049 0.951 46 H 0.009 0.991 47 H 0.030 0.970 48 H 0.258 0.742 49 H 0.038 0.962 50 H 0.075 0.925 51 H 0.070 0.930 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.234 18.083 -8.626 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.063 4.063 3 C -0.146 4.146 4 C -0.138 4.138 5 C -0.140 4.140 6 C -0.105 4.105 7 C -0.196 4.196 8 C -0.004 4.004 9 N -0.220 5.220 10 C -0.073 4.073 11 C -0.074 4.074 12 N -0.242 5.242 13 C -0.026 4.026 14 H 0.096 0.904 15 C -0.243 4.243 16 C -0.144 4.144 17 C -0.006 4.006 18 C -0.558 4.558 19 H 0.069 0.931 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.714 3.286 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.072 4.072 27 C -0.089 4.089 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.055 0.945 40 H 0.112 0.888 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.028 0.972 47 H 0.048 0.952 48 H 0.068 0.932 49 H 0.057 0.943 50 H 0.094 0.906 51 H 0.089 0.911 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.058 18.012 -8.625 20.869 hybrid contribution 0.272 -0.407 0.847 0.979 sum -5.786 17.605 -7.778 20.097 Atomic orbital electron populations 1.20618 0.90790 1.02490 1.02046 1.19787 0.96352 0.91380 0.98755 1.20930 0.94152 0.97198 1.02292 1.21075 0.94288 0.97762 1.00708 1.20920 0.99624 0.91872 1.01603 1.20615 0.94106 0.95903 0.99917 1.21427 1.00662 0.94915 1.02549 1.18554 0.89541 0.91031 1.01259 1.59807 1.55163 1.02624 1.04385 1.22406 1.00620 0.94572 0.89728 1.22229 0.96419 0.92132 0.96576 1.62304 1.56155 1.03799 1.01991 1.21847 0.89766 0.90410 1.00539 0.90433 1.22490 0.99146 1.01750 1.00884 1.21794 1.01706 0.97981 0.92896 1.18988 0.89254 0.96753 0.95619 1.21338 0.93426 1.37742 1.03307 0.93141 1.24984 0.96193 0.96258 0.96869 1.69975 0.99300 1.47343 1.36675 0.86706 0.77273 0.79890 0.84761 1.20835 1.21342 1.20011 1.22131 0.98271 0.94045 0.92760 1.22691 1.00272 0.92672 0.93237 0.91645 0.90434 0.92550 0.86199 0.86360 0.86356 0.90879 0.91451 0.88680 0.92074 0.90739 0.94509 0.88753 0.92448 0.92785 0.93251 0.93199 0.93275 0.97228 0.95185 0.93245 0.94348 0.90629 0.91111 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 9.77 36.01 0.35 -0.69 16 2 C -0.06 -0.73 5.90 -104.42 -0.62 -1.34 16 3 C -0.13 -1.33 9.70 -39.61 -0.38 -1.71 16 4 C -0.12 -1.24 10.04 -39.54 -0.40 -1.64 16 5 C -0.12 -1.38 9.72 -39.61 -0.38 -1.77 16 6 C -0.10 -1.31 5.63 -104.42 -0.59 -1.90 16 7 C -0.14 -1.79 7.80 36.00 0.28 -1.51 16 8 C 0.09 1.17 4.71 -83.79 -0.39 0.77 16 9 N -0.50 -6.56 3.62 -170.96 -0.62 -7.18 16 10 C 0.05 0.75 5.26 -3.77 -0.02 0.73 16 11 C 0.05 0.84 4.84 -3.77 -0.02 0.82 16 12 N -0.52 -8.34 4.19 -226.49 -0.95 -9.29 16 13 C 0.08 1.38 2.43 -67.71 -0.16 1.21 16 14 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 15 C -0.18 -2.56 8.50 37.16 0.32 -2.24 16 16 C -0.11 -2.14 4.32 -26.73 -0.12 -2.25 16 17 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 18 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 19 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 22 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 26 C 0.06 0.77 5.13 -3.77 -0.02 0.75 16 27 C 0.04 0.49 5.04 -3.77 -0.02 0.47 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.87 7.46 -51.93 -0.39 0.48 16 30 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 32 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 33 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 34 H 0.07 0.87 7.49 -51.93 -0.39 0.48 16 35 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 36 H 0.10 1.40 3.24 -51.93 -0.17 1.23 16 37 H 0.06 0.97 5.14 -51.93 -0.27 0.71 16 38 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 39 H 0.04 0.54 6.57 -51.93 -0.34 0.20 16 40 H 0.09 1.63 5.95 -51.93 -0.31 1.32 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.75 6.56 -51.93 -0.34 0.41 16 43 H 0.05 0.63 6.48 -51.93 -0.34 0.29 16 44 H 0.05 0.99 6.00 -51.93 -0.31 0.68 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.03 0.82 7.75 -51.93 -0.40 0.42 16 48 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 49 H 0.04 0.52 6.48 -51.93 -0.34 0.18 16 50 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 51 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 52 H 0.07 1.00 3.77 -51.93 -0.20 0.81 16 LS Contribution 384.58 15.07 5.80 5.80 Total: -1.00 -29.94 384.58 -11.59 -41.53 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -8.82 Total: 1.68 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -2.72 Total: -23.09 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: -0.83 Total: -42.72 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.94 -11.59 -41.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172509968.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.804 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds