Wall clock time and date at job start Tue Mar 31 2020 10:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38100 * 120.03281 * 2 1 4 4 C 1.38295 * 120.06838 * 179.97438 * 3 2 1 5 5 C 1.38282 * 120.15145 * 0.27017 * 4 3 2 6 6 C 1.38102 * 120.07356 * 359.45183 * 5 4 3 7 7 C 1.50697 * 120.03849 * 180.26966 * 6 5 4 8 8 C 1.38911 * 119.92625 * 0.55057 * 6 5 4 9 9 N 1.39670 * 120.07692 * 179.69972 * 8 6 5 10 10 C 1.46958 * 110.99901 * 70.17870 * 9 8 6 11 11 C 1.53052 * 109.36480 * 176.81006 * 10 9 8 12 12 N 1.46956 * 109.36236 * 58.40095 * 11 10 9 13 13 C 1.46901 * 111.00059 * 176.80775 * 12 11 10 14 14 H 1.08997 * 109.47237 * 183.79841 * 13 12 11 15 15 C 1.53005 * 109.46942 * 63.80130 * 13 12 11 16 16 C 1.53008 * 109.47149 * 303.80426 * 13 12 11 17 17 C 1.53001 * 109.46814 * 294.99707 * 16 13 12 18 18 C 1.50701 * 109.46834 * 180.02562 * 17 16 13 19 19 H 1.07999 * 120.00093 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99924 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00184 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00022 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47260 * 89.99822 * 22 20 18 24 24 H 1.48499 * 109.47228 * 210.00464 * 22 20 18 25 25 H 1.48508 * 109.47286 * 330.00120 * 22 20 18 26 26 C 1.46954 * 110.88392 * 300.68179 * 12 11 10 27 27 C 1.46960 * 111.00343 * 306.37851 * 9 8 6 28 28 H 1.08996 * 109.47499 * 89.99866 * 1 2 3 29 29 H 1.08999 * 109.46798 * 209.99973 * 1 2 3 30 30 H 1.09005 * 109.46761 * 329.99571 * 1 2 3 31 31 H 1.08003 * 119.96860 * 359.95928 * 3 2 1 32 32 H 1.08006 * 119.92094 * 180.02562 * 4 3 2 33 33 H 1.08003 * 119.96083 * 179.70464 * 5 4 3 34 34 H 1.08997 * 109.47632 * 275.96662 * 7 6 5 35 35 H 1.09005 * 109.47017 * 35.96572 * 7 6 5 36 36 H 1.09005 * 109.47470 * 155.95987 * 7 6 5 37 37 H 1.09000 * 109.49097 * 296.78119 * 10 9 8 38 38 H 1.08999 * 109.48720 * 56.84590 * 10 9 8 39 39 H 1.08996 * 109.48916 * 298.43542 * 11 10 9 40 40 H 1.09002 * 109.50224 * 178.38077 * 11 10 9 41 41 H 1.08996 * 109.46949 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.46667 * 300.00355 * 15 13 12 43 43 H 1.09004 * 109.46883 * 59.99745 * 15 13 12 44 44 H 1.09003 * 109.47181 * 54.99633 * 16 13 12 45 45 H 1.08999 * 109.46602 * 174.99487 * 16 13 12 46 46 H 1.08999 * 109.46726 * 300.00067 * 17 16 13 47 47 H 1.08999 * 109.47191 * 60.00436 * 17 16 13 48 48 H 0.96997 * 120.00310 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.48310 * 299.35327 * 26 12 11 50 50 H 1.08999 * 109.50942 * 179.29978 * 26 12 11 51 51 H 1.08998 * 109.48761 * 303.15828 * 27 9 8 52 52 H 1.08999 * 109.48515 * 63.19555 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1956 0.0000 4 6 3.5812 1.1964 0.0005 5 6 4.2765 0.0012 -0.0046 6 6 3.5915 -1.1980 0.0012 7 6 4.3501 -2.5001 0.0018 8 6 2.2024 -1.2026 0.0006 9 7 1.5064 -2.4135 0.0001 10 6 1.6468 -3.1021 1.2908 11 6 0.8074 -4.3818 1.2771 12 7 1.2509 -5.2437 0.1726 13 6 0.5190 -6.5174 0.1721 14 1 0.9131 -7.1627 -0.6130 15 6 -0.9661 -6.2521 -0.0834 16 6 0.6884 -7.2035 1.5292 17 6 2.1574 -7.5810 1.7300 18 6 2.3241 -8.2573 3.0664 19 1 1.4679 -8.4036 3.7081 20 6 3.5696 -8.6901 3.4693 21 7 4.6122 -8.5124 2.6877 22 14 3.7764 -9.5278 5.1261 23 1 3.5928 -10.9928 4.9665 24 1 5.1375 -9.2539 5.6528 25 1 2.7630 -9.0027 6.0763 26 6 1.1107 -4.5552 -1.1180 27 6 1.9500 -3.2755 -1.1044 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6583 2.1309 -0.0007 32 1 4.1194 2.1329 0.0010 33 1 5.3565 0.0054 -0.0090 34 1 4.6214 -2.7631 -1.0206 35 1 5.2540 -2.3937 0.6017 36 1 3.7237 -3.2854 0.4249 37 1 2.6940 -3.3558 1.4556 38 1 1.3003 -2.4485 2.0912 39 1 -0.2432 -4.1261 1.1395 40 1 0.9325 -4.9092 2.2229 41 1 -1.5092 -7.1971 -0.0833 42 1 -1.3601 -5.6068 0.7017 43 1 -1.0867 -5.7633 -1.0502 44 1 0.3764 -6.5232 2.3218 45 1 0.0743 -8.1035 1.5604 46 1 2.4693 -8.2612 0.9375 47 1 2.7714 -6.6809 1.6988 48 1 5.4884 -8.8173 2.9710 49 1 0.0635 -4.3015 -1.2828 50 1 1.4569 -5.2086 -1.9188 51 1 1.8246 -2.7482 -2.0501 52 1 3.0007 -3.5308 -0.9670 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172509968.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:03 Heat of formation + Delta-G solvation = 29.990682 kcal Electronic energy + Delta-G solvation = -27838.443283 eV Core-core repulsion = 24416.375813 eV Total energy + Delta-G solvation = -3422.067470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.77920 -39.87210 -37.45658 -35.32855 -34.47682 -33.46245 -32.05322 -31.39705 -30.54910 -28.70709 -27.50578 -27.09225 -25.98289 -24.60459 -23.23750 -22.28691 -21.61472 -21.49500 -20.08949 -18.36549 -17.96561 -16.93179 -16.83715 -16.52473 -16.12745 -16.05031 -15.87207 -15.40936 -14.92636 -14.80273 -14.62896 -14.48954 -14.37814 -14.08366 -13.90884 -13.80307 -13.43030 -13.20063 -13.12674 -13.05404 -12.93386 -12.77289 -12.52755 -12.48697 -12.34807 -12.26387 -12.22653 -11.90982 -11.85679 -11.68156 -11.49692 -11.34721 -11.17490 -10.87471 -10.48001 -9.55724 -9.46414 -9.25513 -8.94900 -8.13102 -6.23259 0.37611 0.46530 1.39785 1.40796 1.51540 2.43567 2.76987 2.85105 3.04330 3.19445 3.86327 3.89169 3.94811 3.98611 4.13277 4.19424 4.28791 4.30596 4.36731 4.40923 4.43046 4.50070 4.54202 4.54994 4.62249 4.64616 4.72172 4.76625 4.84441 4.87744 4.90957 4.93244 4.94116 4.97591 5.02392 5.04558 5.11715 5.16867 5.29857 5.34795 5.45302 5.47684 5.58601 5.60513 5.60704 5.71862 5.89150 5.89975 5.98744 6.02748 6.28368 6.32774 6.36817 6.52264 6.96424 7.44845 8.97861 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014582 B = 0.003529 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.665418 B = 7933.075969 C = 9023.623704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.071 4.071 3 C -0.127 4.127 4 C -0.118 4.118 5 C -0.132 4.132 6 C -0.119 4.119 7 C -0.133 4.133 8 C 0.067 3.933 9 N -0.488 5.488 10 C 0.060 3.940 11 C 0.063 3.937 12 N -0.540 5.540 13 C 0.088 3.912 14 H 0.068 0.932 15 C -0.171 4.171 16 C -0.094 4.094 17 C 0.043 3.957 18 C -0.541 4.541 19 H 0.054 0.946 20 C 0.001 3.999 21 N -0.930 5.930 22 Si 0.957 3.043 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.264 1.264 26 C 0.061 3.939 27 C 0.041 3.959 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.130 0.870 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.051 0.949 46 H -0.022 1.022 47 H 0.003 0.997 48 H 0.260 0.740 49 H 0.049 0.951 50 H 0.079 0.921 51 H 0.083 0.917 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.532 19.815 -8.575 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.072 4.072 3 C -0.145 4.145 4 C -0.135 4.135 5 C -0.150 4.150 6 C -0.121 4.121 7 C -0.189 4.189 8 C -0.027 4.027 9 N -0.209 5.209 10 C -0.066 4.066 11 C -0.065 4.065 12 N -0.264 5.264 13 C -0.020 4.020 14 H 0.086 0.914 15 C -0.230 4.230 16 C -0.132 4.132 17 C 0.006 3.994 18 C -0.579 4.579 19 H 0.073 0.927 20 C -0.196 4.196 21 N -0.571 5.571 22 Si 0.782 3.218 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.189 1.189 26 C -0.067 4.067 27 C -0.086 4.086 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.164 0.836 32 H 0.163 0.837 33 H 0.148 0.852 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.069 0.931 46 H -0.004 1.004 47 H 0.021 0.979 48 H 0.069 0.931 49 H 0.067 0.933 50 H 0.097 0.903 51 H 0.101 0.899 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.374 19.750 -8.580 22.761 hybrid contribution 0.737 -0.888 0.806 1.408 sum -6.637 18.862 -7.774 21.453 Atomic orbital electron populations 1.20598 0.89719 1.02707 1.02438 1.20060 0.97297 0.91343 0.98499 1.21272 0.94423 0.97745 1.01088 1.21427 0.94543 0.98366 0.99195 1.21146 1.00437 0.91868 1.01562 1.20659 0.94297 0.96110 1.01037 1.21315 1.00255 0.94818 1.02526 1.18719 0.89798 0.91230 1.02903 1.59818 1.55038 1.02610 1.03471 1.22260 0.99109 0.94369 0.90894 1.22079 0.97158 0.92055 0.95206 1.62230 1.56811 1.04034 1.03362 1.21655 0.92102 0.90438 0.97843 0.91420 1.22339 0.96431 1.02417 1.01803 1.21596 0.97709 0.98480 0.95397 1.18778 0.92471 0.94479 0.93679 1.21787 0.93793 1.37938 1.04413 0.92748 1.25898 0.95855 0.96922 1.00931 1.70117 0.99831 1.48374 1.38774 0.85575 0.77445 0.78894 0.79889 1.19925 1.20924 1.18868 1.22138 0.98950 0.94099 0.91471 1.22654 0.99509 0.92605 0.93811 0.91080 0.91786 0.90746 0.83579 0.83650 0.85207 0.90518 0.91513 0.90933 0.94239 0.90279 0.93346 0.91296 0.91647 0.92548 0.91585 0.92928 0.93076 1.00393 0.97870 0.93105 0.93319 0.90276 0.89900 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.78 9.77 71.24 0.70 -1.08 16 2 C -0.07 -1.54 5.90 -19.73 -0.12 -1.66 16 3 C -0.13 -2.31 9.70 22.25 0.22 -2.09 16 4 C -0.12 -2.12 10.04 22.29 0.22 -1.90 16 5 C -0.13 -2.83 9.72 22.25 0.22 -2.62 16 6 C -0.12 -3.02 5.63 -19.74 -0.11 -3.13 16 7 C -0.13 -3.58 7.80 71.23 0.56 -3.02 16 8 C 0.07 1.71 4.71 38.21 0.18 1.89 16 9 N -0.49 -12.78 3.62 -694.79 -2.51 -15.30 16 10 C 0.06 1.78 5.26 86.31 0.45 2.23 16 11 C 0.06 1.98 4.84 86.31 0.42 2.40 16 12 N -0.54 -17.74 4.19 -870.48 -3.65 -21.39 16 13 C 0.09 2.95 2.43 44.92 0.11 3.06 16 14 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 15 C -0.17 -4.48 8.50 71.98 0.61 -3.87 16 16 C -0.09 -3.88 4.32 30.60 0.13 -3.75 16 17 C 0.04 2.31 4.86 29.85 0.15 2.45 16 18 C -0.54 -31.40 9.11 25.60 0.23 -31.16 16 19 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 20 C 0.00 0.08 5.46 84.65 0.46 0.55 16 21 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 22 Si 0.96 45.21 29.54 68.60 2.03 47.23 16 23 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 26 C 0.06 1.65 5.13 86.31 0.44 2.10 16 27 C 0.04 1.06 5.04 86.31 0.44 1.50 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.34 7.46 -2.39 -0.02 1.32 16 30 H 0.07 1.06 8.09 -2.38 -0.02 1.04 16 31 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 32 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 33 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 34 H 0.08 1.92 7.49 -2.39 -0.02 1.90 16 35 H 0.07 1.72 8.12 -2.38 -0.02 1.70 16 36 H 0.07 2.30 3.24 -2.38 -0.01 2.29 16 37 H 0.04 1.35 5.14 -2.39 -0.01 1.34 16 38 H 0.08 2.22 8.13 -2.39 -0.02 2.20 16 39 H 0.05 1.39 6.57 -2.39 -0.02 1.38 16 40 H 0.07 2.49 5.95 -2.39 -0.01 2.48 16 41 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.06 1.46 6.56 -2.39 -0.02 1.44 16 43 H 0.07 1.53 6.48 -2.38 -0.02 1.51 16 44 H 0.05 2.13 6.00 -2.39 -0.01 2.12 16 45 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 46 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 47 H 0.00 0.17 7.75 -2.39 -0.02 0.15 16 48 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 49 H 0.05 1.22 6.48 -2.39 -0.02 1.21 16 50 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 51 H 0.08 1.96 8.13 -2.39 -0.02 1.94 16 52 H 0.06 1.75 3.77 -2.39 -0.01 1.74 16 Total: -1.00 -65.79 384.58 2.34 -63.45 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.89 Total: 21.66 kcal Atomic # 6 Polarization: -43.41 SS G_CDS: 5.30 Total: -38.11 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -5.88 Total: -94.23 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -65.79 2.34 -63.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172509968.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.436 kcal (2) G-P(sol) polarization free energy of solvation -65.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds