Wall clock time and date at job start Tue Mar 31 2020 10:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47493 * 2 1 4 4 C 1.38240 * 119.99810 * 270.21004 * 3 2 1 5 5 C 1.38241 * 119.99899 * 180.25584 * 4 3 2 6 6 C 1.38234 * 119.99822 * 359.51064 * 5 4 3 7 7 C 1.50698 * 120.00050 * 180.25583 * 6 5 4 8 8 C 1.52998 * 109.47239 * 88.64803 * 7 6 5 9 9 H 1.09010 * 109.47080 * 53.92696 * 8 7 6 10 10 C 1.53004 * 109.47180 * 293.92819 * 8 7 6 11 11 N 1.46900 * 109.47463 * 173.92643 * 8 7 6 12 12 C 1.46955 * 110.99662 * 307.50621 * 11 8 7 13 13 C 1.53056 * 109.36332 * 176.81045 * 12 11 8 14 14 N 1.46954 * 109.36555 * 58.40099 * 13 12 11 15 15 C 1.46896 * 111.00001 * 176.81448 * 14 13 12 16 16 C 1.50701 * 109.47629 * 53.67652 * 15 14 13 17 17 H 1.08002 * 119.99107 * 5.21815 * 16 15 14 18 18 C 1.37871 * 120.00362 * 185.21973 * 16 15 14 19 19 N 1.31519 * 120.00096 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99917 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47303 * 60.00323 * 20 18 16 22 22 H 1.48506 * 109.47017 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47457 * 299.99887 * 20 18 16 24 24 C 1.46956 * 110.87677 * 300.67830 * 14 13 12 25 25 C 1.46954 * 111.00322 * 183.70649 * 11 8 7 26 26 C 1.38242 * 120.00042 * 0.27416 * 6 5 4 27 27 C 1.38230 * 120.00087 * 89.99833 * 3 2 1 28 28 H 1.09001 * 109.47125 * 300.00284 * 1 2 3 29 29 H 1.09005 * 109.46910 * 59.99929 * 1 2 3 30 30 H 1.08992 * 109.47664 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47125 * 239.99715 * 2 1 3 32 32 H 1.08995 * 109.47003 * 120.00111 * 2 1 3 33 33 H 1.07999 * 119.99853 * 0.04089 * 4 3 2 34 34 H 1.07991 * 120.00261 * 179.78881 * 5 4 3 35 35 H 1.09004 * 109.47138 * 208.64763 * 7 6 5 36 36 H 1.08997 * 109.46835 * 328.64800 * 7 6 5 37 37 H 1.09004 * 109.46851 * 180.02562 * 10 8 7 38 38 H 1.08997 * 109.46730 * 299.99700 * 10 8 7 39 39 H 1.08999 * 109.47159 * 59.99992 * 10 8 7 40 40 H 1.08999 * 109.49255 * 296.77350 * 12 11 8 41 41 H 1.09005 * 109.49511 * 56.84134 * 12 11 8 42 42 H 1.08992 * 109.48591 * 298.43022 * 13 12 11 43 43 H 1.09006 * 109.48668 * 178.36778 * 13 12 11 44 44 H 1.08993 * 109.47318 * 173.68091 * 15 14 13 45 45 H 1.09002 * 109.47085 * 293.67580 * 15 14 13 46 46 H 0.96997 * 120.00257 * 179.97438 * 19 18 16 47 47 H 1.08993 * 109.49585 * 299.35141 * 24 14 13 48 48 H 1.09002 * 109.48758 * 179.28545 * 24 14 13 49 49 H 1.08998 * 109.48860 * 303.15583 * 25 11 8 50 50 H 1.09001 * 109.48910 * 63.19856 * 25 11 8 51 51 H 1.07999 * 119.99779 * 179.97438 * 26 6 5 52 52 H 1.08002 * 120.00182 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2587 2.0738 -1.1972 5 6 2.7246 3.3754 -1.1973 6 6 2.9546 4.0272 -0.0001 7 6 3.4570 5.4479 -0.0001 8 6 2.2675 6.4095 -0.0347 9 1 1.5859 6.1739 0.7827 10 6 1.5331 6.2645 -1.3691 11 7 2.7490 7.7896 0.1117 12 6 3.6104 7.9241 1.2947 13 6 4.1540 9.3530 1.3669 14 7 3.0311 10.2991 1.4264 15 6 3.5127 11.6792 1.5728 16 6 4.5042 11.9840 0.4796 17 1 4.6889 11.2589 -0.2993 18 6 5.1754 13.1882 0.4737 19 7 4.9508 14.0709 1.4225 20 14 6.4049 13.5656 -0.8810 21 1 5.7175 13.5318 -2.1968 22 1 6.9862 14.9143 -0.6602 23 1 7.4889 12.5509 -0.8625 24 6 2.1698 10.1646 0.2433 25 6 1.6261 8.7357 0.1712 26 6 2.7241 3.3756 1.1971 27 6 2.2628 2.0724 1.1971 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.0748 1.5661 -2.1325 34 1 2.9047 3.8844 -2.1325 35 1 4.0423 5.6264 0.9020 36 1 4.0826 5.6120 -0.8775 37 1 0.6859 6.9500 -1.3939 38 1 2.2147 6.5002 -2.1864 39 1 1.1758 5.2405 -1.4778 40 1 3.0311 7.7097 2.1927 41 1 4.4412 7.2222 1.2214 42 1 4.7559 9.5582 0.4817 43 1 4.7700 9.4631 2.2595 44 1 2.6705 12.3674 1.5016 45 1 3.9951 11.7946 2.5434 46 1 5.4233 14.9180 1.4186 47 1 2.7491 10.3791 -0.6547 48 1 1.3390 10.8664 0.3167 49 1 1.0102 8.6256 -0.7213 50 1 1.0240 8.5303 1.0562 51 1 2.9042 3.8847 2.1324 52 1 2.0824 1.5635 2.1324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173243507.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:02 Heat of formation + Delta-G solvation = 19.389383 kcal Electronic energy + Delta-G solvation = -26526.277125 eV Core-core repulsion = 23103.749948 eV Total energy + Delta-G solvation = -3422.527177 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.98063 -38.83877 -36.30444 -34.57653 -32.74437 -31.61559 -31.12520 -30.58110 -29.46191 -27.16160 -26.71243 -24.80098 -23.54676 -22.88569 -22.47627 -21.80213 -20.84120 -19.98159 -19.06094 -16.70940 -16.30994 -15.97066 -15.79018 -15.29268 -14.72009 -14.48209 -14.39520 -14.13128 -14.02712 -13.88829 -13.81060 -13.53005 -13.41805 -12.95036 -12.84714 -12.67330 -12.21876 -12.13124 -12.00465 -11.71262 -11.57492 -11.53183 -11.15108 -11.07780 -11.04484 -10.93362 -10.87286 -10.73741 -10.56282 -10.43951 -10.22480 -9.92718 -9.76674 -9.47263 -9.05653 -8.61070 -8.40227 -7.99970 -7.12384 -5.99511 -4.08365 1.17084 1.25442 3.31235 3.35747 3.38820 3.55791 4.10716 4.43454 4.49172 4.55716 4.80157 4.84524 4.87005 4.99747 5.02110 5.04225 5.15045 5.22043 5.30676 5.32379 5.34937 5.42258 5.45724 5.55669 5.63540 5.67487 5.70491 5.77121 5.82291 5.85214 5.88977 5.93361 5.95026 5.98762 6.02729 6.13517 6.18050 6.27560 6.29657 6.40287 6.43666 6.55900 6.66913 6.81225 6.86757 6.92733 7.25513 7.40691 7.46417 7.56040 7.93518 8.09160 8.32385 8.34923 9.02251 9.58218 11.05444 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028903 B = 0.002303 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.528850 B =12156.526273 C =12319.913566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.091 4.091 4 C -0.118 4.118 5 C -0.111 4.111 6 C -0.075 4.075 7 C -0.081 4.081 8 C 0.090 3.910 9 H 0.037 0.963 10 C -0.146 4.146 11 N -0.532 5.532 12 C 0.053 3.947 13 C 0.066 3.934 14 N -0.544 5.544 15 C 0.187 3.813 16 C -0.547 4.547 17 H 0.059 0.941 18 C 0.064 3.936 19 N -0.892 5.892 20 Si 0.890 3.110 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.064 3.936 25 C 0.059 3.941 26 C -0.114 4.114 27 C -0.117 4.117 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.032 0.968 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.067 0.933 44 H 0.025 0.975 45 H 0.034 0.966 46 H 0.262 0.738 47 H 0.045 0.955 48 H 0.066 0.934 49 H 0.071 0.929 50 H 0.032 0.968 51 H 0.120 0.880 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.495 -26.313 -3.234 27.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.136 4.136 5 C -0.129 4.129 6 C -0.076 4.076 7 C -0.119 4.119 8 C -0.019 4.019 9 H 0.054 0.946 10 C -0.204 4.204 11 N -0.258 5.258 12 C -0.074 4.074 13 C -0.063 4.063 14 N -0.269 5.269 15 C 0.061 3.939 16 C -0.586 4.586 17 H 0.077 0.923 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.065 4.065 25 C -0.069 4.069 26 C -0.132 4.132 27 C -0.135 4.135 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.050 0.950 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.044 0.956 45 H 0.052 0.948 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.084 0.916 49 H 0.089 0.911 50 H 0.050 0.950 51 H 0.138 0.862 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.454 -26.110 -3.154 27.336 hybrid contribution 0.751 0.437 -0.716 1.126 sum -6.703 -25.673 -3.870 26.815 Atomic orbital electron populations 1.21750 0.94789 1.01580 1.02293 1.20525 0.96145 0.92837 1.02642 1.19855 0.99791 0.96204 0.93282 1.20994 1.00291 0.94965 0.97370 1.21079 0.99464 0.94559 0.97776 1.19893 0.98749 0.95892 0.93066 1.20805 0.97640 0.89573 1.03856 1.21494 0.94697 0.88291 0.97400 0.94551 1.21929 1.00220 1.01192 0.97010 1.62176 1.19802 1.03391 1.40382 1.22347 0.96263 0.98424 0.90413 1.21918 0.93498 0.89436 1.01422 1.62689 1.18936 1.08246 1.36982 1.19729 0.94606 0.82670 0.96876 1.21734 1.23995 1.01797 1.11078 0.92313 1.24970 0.96860 0.96255 0.95790 1.69939 1.42430 1.07912 1.32823 0.86697 0.81640 0.77383 0.82532 1.20288 1.21295 1.20255 1.21933 0.97044 0.93559 0.94007 1.22237 0.91992 0.92945 0.99686 1.21071 0.99682 0.94730 0.97742 1.20981 1.00170 0.94929 0.97405 0.92546 0.92552 0.92510 0.91207 0.91209 0.86388 0.85972 0.90397 0.90115 0.92629 0.91869 0.92276 0.95007 0.90890 0.93104 0.91441 0.95649 0.94763 0.92823 0.93674 0.91564 0.91107 0.94966 0.86192 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.90 37.16 0.37 -0.54 16 2 C -0.08 -0.56 6.06 -27.88 -0.17 -0.73 16 3 C -0.09 -0.80 5.13 -104.62 -0.54 -1.34 16 4 C -0.12 -1.06 9.70 -39.58 -0.38 -1.45 16 5 C -0.11 -1.08 7.92 -39.58 -0.31 -1.39 16 6 C -0.08 -0.79 4.78 -104.62 -0.50 -1.29 16 7 C -0.08 -0.92 4.57 -27.88 -0.13 -1.05 16 8 C 0.09 1.13 2.12 -67.71 -0.14 0.98 16 9 H 0.04 0.49 8.14 -51.92 -0.42 0.06 16 10 C -0.15 -1.66 8.60 37.16 0.32 -1.34 16 11 N -0.53 -8.21 4.58 -226.48 -1.04 -9.25 16 12 C 0.05 0.86 5.14 -3.76 -0.02 0.84 16 13 C 0.07 1.32 5.15 -3.77 -0.02 1.31 16 14 N -0.54 -11.91 4.92 -235.92 -1.16 -13.07 16 15 C 0.19 4.87 5.19 -4.98 -0.03 4.85 16 16 C -0.55 -15.14 7.69 -34.44 -0.26 -15.41 16 17 H 0.06 1.63 5.83 -52.49 -0.31 1.32 16 18 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 19 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 20 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C 0.06 1.26 5.37 -3.77 -0.02 1.24 16 25 C 0.06 0.96 5.38 -3.77 -0.02 0.94 16 26 C -0.11 -1.16 9.70 -39.58 -0.38 -1.54 16 27 C -0.12 -1.08 9.70 -39.58 -0.38 -1.46 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 32 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 34 H 0.12 1.07 7.93 -52.49 -0.42 0.66 16 35 H 0.08 0.89 5.82 -51.93 -0.30 0.59 16 36 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 37 H 0.05 0.64 6.42 -51.93 -0.33 0.30 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.61 6.20 -51.93 -0.32 0.29 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 1.04 5.88 -51.93 -0.31 0.74 16 42 H 0.05 1.13 6.33 -51.93 -0.33 0.80 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.03 0.70 8.02 -51.93 -0.42 0.29 16 45 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.04 0.99 7.13 -51.93 -0.37 0.62 16 48 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 49 H 0.07 1.02 6.25 -51.93 -0.32 0.70 16 50 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 51 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 52 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 395.11 15.07 5.95 5.95 Total: -1.00 -29.51 395.11 -12.56 -42.07 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -9.31 Total: -0.98 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -2.72 Total: -15.69 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -1.46 Total: -48.01 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.51 -12.56 -42.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173243507.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.464 kcal (2) G-P(sol) polarization free energy of solvation -29.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds