Wall clock time and date at job start Tue Mar 31 2020 10:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47493 * 2 1 4 4 C 1.38240 * 119.99810 * 270.21004 * 3 2 1 5 5 C 1.38241 * 119.99899 * 180.25584 * 4 3 2 6 6 C 1.38234 * 119.99822 * 359.51064 * 5 4 3 7 7 C 1.50698 * 120.00050 * 180.25583 * 6 5 4 8 8 C 1.52998 * 109.47239 * 88.64803 * 7 6 5 9 9 H 1.09010 * 109.47080 * 53.92696 * 8 7 6 10 10 C 1.53004 * 109.47180 * 293.92819 * 8 7 6 11 11 N 1.46900 * 109.47463 * 173.92643 * 8 7 6 12 12 C 1.46955 * 110.99662 * 307.50621 * 11 8 7 13 13 C 1.53056 * 109.36332 * 176.81045 * 12 11 8 14 14 N 1.46954 * 109.36555 * 58.40099 * 13 12 11 15 15 C 1.46896 * 111.00001 * 176.81448 * 14 13 12 16 16 C 1.50701 * 109.47629 * 53.67652 * 15 14 13 17 17 H 1.08002 * 119.99107 * 5.21815 * 16 15 14 18 18 C 1.37871 * 120.00362 * 185.21973 * 16 15 14 19 19 N 1.31519 * 120.00096 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99917 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47303 * 60.00323 * 20 18 16 22 22 H 1.48506 * 109.47017 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47457 * 299.99887 * 20 18 16 24 24 C 1.46956 * 110.87677 * 300.67830 * 14 13 12 25 25 C 1.46954 * 111.00322 * 183.70649 * 11 8 7 26 26 C 1.38242 * 120.00042 * 0.27416 * 6 5 4 27 27 C 1.38230 * 120.00087 * 89.99833 * 3 2 1 28 28 H 1.09001 * 109.47125 * 300.00284 * 1 2 3 29 29 H 1.09005 * 109.46910 * 59.99929 * 1 2 3 30 30 H 1.08992 * 109.47664 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47125 * 239.99715 * 2 1 3 32 32 H 1.08995 * 109.47003 * 120.00111 * 2 1 3 33 33 H 1.07999 * 119.99853 * 0.04089 * 4 3 2 34 34 H 1.07991 * 120.00261 * 179.78881 * 5 4 3 35 35 H 1.09004 * 109.47138 * 208.64763 * 7 6 5 36 36 H 1.08997 * 109.46835 * 328.64800 * 7 6 5 37 37 H 1.09004 * 109.46851 * 180.02562 * 10 8 7 38 38 H 1.08997 * 109.46730 * 299.99700 * 10 8 7 39 39 H 1.08999 * 109.47159 * 59.99992 * 10 8 7 40 40 H 1.08999 * 109.49255 * 296.77350 * 12 11 8 41 41 H 1.09005 * 109.49511 * 56.84134 * 12 11 8 42 42 H 1.08992 * 109.48591 * 298.43022 * 13 12 11 43 43 H 1.09006 * 109.48668 * 178.36778 * 13 12 11 44 44 H 1.08993 * 109.47318 * 173.68091 * 15 14 13 45 45 H 1.09002 * 109.47085 * 293.67580 * 15 14 13 46 46 H 0.96997 * 120.00257 * 179.97438 * 19 18 16 47 47 H 1.08993 * 109.49585 * 299.35141 * 24 14 13 48 48 H 1.09002 * 109.48758 * 179.28545 * 24 14 13 49 49 H 1.08998 * 109.48860 * 303.15583 * 25 11 8 50 50 H 1.09001 * 109.48910 * 63.19856 * 25 11 8 51 51 H 1.07999 * 119.99779 * 179.97438 * 26 6 5 52 52 H 1.08002 * 120.00182 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2587 2.0738 -1.1972 5 6 2.7246 3.3754 -1.1973 6 6 2.9546 4.0272 -0.0001 7 6 3.4570 5.4479 -0.0001 8 6 2.2675 6.4095 -0.0347 9 1 1.5859 6.1739 0.7827 10 6 1.5331 6.2645 -1.3691 11 7 2.7490 7.7896 0.1117 12 6 3.6104 7.9241 1.2947 13 6 4.1540 9.3530 1.3669 14 7 3.0311 10.2991 1.4264 15 6 3.5127 11.6792 1.5728 16 6 4.5042 11.9840 0.4796 17 1 4.6889 11.2589 -0.2993 18 6 5.1754 13.1882 0.4737 19 7 4.9508 14.0709 1.4225 20 14 6.4049 13.5656 -0.8810 21 1 5.7175 13.5318 -2.1968 22 1 6.9862 14.9143 -0.6602 23 1 7.4889 12.5509 -0.8625 24 6 2.1698 10.1646 0.2433 25 6 1.6261 8.7357 0.1712 26 6 2.7241 3.3756 1.1971 27 6 2.2628 2.0724 1.1971 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.0748 1.5661 -2.1325 34 1 2.9047 3.8844 -2.1325 35 1 4.0423 5.6264 0.9020 36 1 4.0826 5.6120 -0.8775 37 1 0.6859 6.9500 -1.3939 38 1 2.2147 6.5002 -2.1864 39 1 1.1758 5.2405 -1.4778 40 1 3.0311 7.7097 2.1927 41 1 4.4412 7.2222 1.2214 42 1 4.7559 9.5582 0.4817 43 1 4.7700 9.4631 2.2595 44 1 2.6705 12.3674 1.5016 45 1 3.9951 11.7946 2.5434 46 1 5.4233 14.9180 1.4186 47 1 2.7491 10.3791 -0.6547 48 1 1.3390 10.8664 0.3167 49 1 1.0102 8.6256 -0.7213 50 1 1.0240 8.5303 1.0562 51 1 2.9042 3.8847 2.1324 52 1 2.0824 1.5635 2.1324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173243507.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:02 Heat of formation + Delta-G solvation = 3.333395 kcal Electronic energy + Delta-G solvation = -26526.973365 eV Core-core repulsion = 23103.749948 eV Total energy + Delta-G solvation = -3423.223417 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.86716 -40.04698 -37.65538 -35.56281 -34.53560 -32.84932 -32.05649 -31.74793 -30.46456 -28.89637 -27.60896 -26.51858 -24.47079 -23.87666 -23.55037 -23.42222 -21.69309 -21.01763 -20.58105 -18.48068 -17.65999 -16.96210 -16.56919 -16.51900 -16.13027 -15.83073 -15.64418 -15.53530 -15.32908 -14.95575 -14.61424 -14.50772 -14.43227 -14.11189 -13.93821 -13.72440 -13.64908 -13.46527 -12.95244 -12.86730 -12.82048 -12.59505 -12.53909 -12.44941 -12.24895 -12.15470 -12.07670 -12.00692 -11.88669 -11.76233 -11.61934 -11.55876 -11.27181 -11.23274 -10.60567 -9.75813 -9.33532 -9.26430 -9.00280 -8.15394 -6.34871 0.46017 0.55417 1.36702 1.38301 1.46575 2.37308 2.78840 2.98723 3.08911 3.38284 3.86652 3.89196 3.97459 4.02575 4.08224 4.16399 4.20427 4.26421 4.34156 4.44463 4.49699 4.53366 4.53569 4.54872 4.64348 4.67355 4.71794 4.73573 4.82010 4.90345 4.94714 4.96981 5.08649 5.09361 5.10851 5.11866 5.14194 5.22894 5.27176 5.27516 5.29501 5.32630 5.39825 5.41459 5.58256 5.73527 5.78153 5.80212 6.03029 6.11721 6.16129 6.19441 6.32975 6.53135 6.85526 7.36223 8.86850 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028903 B = 0.002303 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.528850 B =12156.526273 C =12319.913566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.124 4.124 5 C -0.117 4.117 6 C -0.088 4.088 7 C -0.074 4.074 8 C 0.094 3.906 9 H 0.034 0.966 10 C -0.140 4.140 11 N -0.542 5.542 12 C 0.066 3.934 13 C 0.068 3.932 14 N -0.544 5.544 15 C 0.200 3.800 16 C -0.554 4.554 17 H 0.056 0.944 18 C 0.010 3.990 19 N -0.926 5.926 20 Si 0.958 3.042 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.270 1.270 24 C 0.065 3.935 25 C 0.070 3.930 26 C -0.126 4.126 27 C -0.125 4.125 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.035 0.965 41 H 0.095 0.905 42 H 0.027 0.973 43 H 0.059 0.941 44 H 0.002 0.998 45 H 0.006 0.994 46 H 0.265 0.735 47 H 0.022 0.978 48 H 0.064 0.936 49 H 0.093 0.907 50 H 0.035 0.965 51 H 0.123 0.877 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.690 -28.789 -4.536 30.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.142 4.142 5 C -0.135 4.135 6 C -0.088 4.088 7 C -0.111 4.111 8 C -0.014 4.014 9 H 0.052 0.948 10 C -0.198 4.198 11 N -0.267 5.267 12 C -0.062 4.062 13 C -0.061 4.061 14 N -0.268 5.268 15 C 0.073 3.927 16 C -0.593 4.593 17 H 0.074 0.926 18 C -0.189 4.189 19 N -0.566 5.566 20 Si 0.783 3.217 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.195 1.195 24 C -0.064 4.064 25 C -0.058 4.058 26 C -0.144 4.144 27 C -0.143 4.143 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.153 0.847 34 H 0.147 0.853 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.053 0.947 41 H 0.113 0.887 42 H 0.045 0.955 43 H 0.078 0.922 44 H 0.020 0.980 45 H 0.025 0.975 46 H 0.074 0.926 47 H 0.040 0.960 48 H 0.082 0.918 49 H 0.111 0.889 50 H 0.053 0.947 51 H 0.141 0.859 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.660 -28.614 -4.461 29.955 hybrid contribution 0.770 1.144 -0.283 1.408 sum -6.890 -27.469 -4.744 28.715 Atomic orbital electron populations 1.21736 0.94422 1.02302 1.01790 1.20571 0.96366 0.91630 1.03497 1.20159 0.98995 0.97191 0.93068 1.21250 0.99889 0.94815 0.98276 1.21222 0.99454 0.95026 0.97800 1.19836 0.99854 0.95494 0.93627 1.20693 0.96944 0.89945 1.03526 1.21531 0.95293 0.86538 0.98022 0.94805 1.21886 0.99914 1.01974 0.96011 1.62166 1.19689 1.05017 1.39857 1.22199 0.97206 0.95782 0.91017 1.21924 0.92797 0.91491 0.99864 1.62626 1.19606 1.06284 1.38332 1.19394 0.93273 0.84866 0.95176 1.21918 1.24262 1.01876 1.11197 0.92585 1.25831 0.98820 0.96084 0.98178 1.70061 1.43571 1.08378 1.34601 0.85606 0.79182 0.77397 0.79490 1.19594 1.20643 1.19486 1.21964 0.96177 0.96402 0.91845 1.22107 0.92171 0.90576 1.00899 1.21213 1.00045 0.95317 0.97828 1.21208 1.00002 0.94766 0.98352 0.93155 0.92938 0.91218 0.90273 0.90485 0.84717 0.85253 0.90689 0.90412 0.92647 0.92080 0.91039 0.94692 0.88675 0.95504 0.92231 0.97964 0.97549 0.92613 0.95996 0.91762 0.88874 0.94695 0.85931 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.90 71.98 0.71 -0.77 16 2 C -0.08 -0.91 6.06 29.85 0.18 -0.73 16 3 C -0.09 -1.45 5.13 -19.87 -0.10 -1.56 16 4 C -0.12 -1.96 9.70 22.27 0.22 -1.74 16 5 C -0.12 -2.05 7.92 22.27 0.18 -1.88 16 6 C -0.09 -1.70 4.78 -19.86 -0.09 -1.79 16 7 C -0.07 -1.54 4.57 29.85 0.14 -1.41 16 8 C 0.09 2.19 2.12 44.92 0.10 2.28 16 9 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 10 C -0.14 -2.88 8.60 71.98 0.62 -2.26 16 11 N -0.54 -16.00 4.58 -870.45 -3.98 -19.98 16 12 C 0.07 2.06 5.14 86.31 0.44 2.50 16 13 C 0.07 2.76 5.15 86.31 0.44 3.21 16 14 N -0.54 -24.42 4.92 -900.31 -4.43 -28.85 16 15 C 0.20 10.86 5.19 85.56 0.44 11.30 16 16 C -0.55 -31.44 7.69 25.60 0.20 -31.24 16 17 H 0.06 3.17 5.83 -2.91 -0.02 3.15 16 18 C 0.01 0.58 5.46 84.65 0.46 1.04 16 19 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 20 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 24 C 0.06 2.59 5.37 86.31 0.46 3.05 16 25 C 0.07 2.19 5.38 86.31 0.46 2.65 16 26 C -0.13 -2.37 9.70 22.27 0.22 -2.15 16 27 C -0.13 -2.09 9.70 22.27 0.22 -1.88 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 32 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 33 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.13 2.01 7.93 -2.92 -0.02 1.99 16 35 H 0.07 1.59 5.82 -2.39 -0.01 1.58 16 36 H 0.08 1.67 8.09 -2.39 -0.02 1.66 16 37 H 0.05 1.13 6.42 -2.39 -0.02 1.12 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.07 1.30 6.20 -2.39 -0.01 1.28 16 40 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.10 2.57 5.88 -2.38 -0.01 2.56 16 42 H 0.03 1.22 6.33 -2.39 -0.02 1.20 16 43 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 44 H 0.00 0.13 8.02 -2.39 -0.02 0.11 16 45 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 47 H 0.02 0.97 7.13 -2.39 -0.02 0.95 16 48 H 0.06 2.54 8.07 -2.39 -0.02 2.52 16 49 H 0.09 2.51 6.25 -2.39 -0.01 2.49 16 50 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.12 2.14 8.06 -2.91 -0.02 2.12 16 52 H 0.13 1.75 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -63.96 395.11 0.05 -63.90 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.86 Total: 15.22 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 5.29 Total: -21.36 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -8.13 Total: -104.56 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -63.96 0.05 -63.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173243507.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.234 kcal (2) G-P(sol) polarization free energy of solvation -63.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds