Wall clock time and date at job start Tue Mar 31 2020 10:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46786 * 2 1 4 4 C 1.38236 * 120.00340 * 90.00282 * 3 2 1 5 5 C 1.38233 * 120.00115 * 179.97438 * 4 3 2 6 6 C 1.38231 * 120.00128 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00202 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47233 * 89.99422 * 7 6 5 9 9 H 1.09007 * 109.46693 * 55.00445 * 8 7 6 10 10 C 1.53004 * 109.46803 * 175.00003 * 8 7 6 11 11 N 1.46894 * 109.47197 * 295.00103 * 8 7 6 12 12 C 1.46956 * 111.00191 * 298.80021 * 11 8 7 13 13 C 1.53048 * 109.36312 * 176.81274 * 12 11 8 14 14 N 1.46956 * 109.36521 * 58.40083 * 13 12 11 15 15 C 1.46902 * 110.99746 * 176.81166 * 14 13 12 16 16 C 1.50697 * 109.47285 * 58.99319 * 15 14 13 17 17 H 1.07995 * 120.00124 * 4.98729 * 16 15 14 18 18 C 1.37874 * 120.00031 * 184.98936 * 16 15 14 19 19 N 1.31516 * 120.00497 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99958 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47002 * 90.00316 * 20 18 16 22 22 H 1.48508 * 109.47222 * 210.00226 * 20 18 16 23 23 H 1.48497 * 109.47077 * 329.99951 * 20 18 16 24 24 C 1.46957 * 110.88156 * 300.67450 * 14 13 12 25 25 C 1.46956 * 110.99804 * 174.99989 * 11 8 7 26 26 C 1.38241 * 119.99944 * 0.24738 * 6 5 4 27 27 C 1.38230 * 119.99685 * 359.49961 * 26 6 5 28 28 H 1.08994 * 109.46567 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46752 * 300.00027 * 1 2 3 30 30 H 1.08995 * 109.47041 * 59.99941 * 1 2 3 31 31 H 1.08997 * 109.47263 * 240.00021 * 2 1 3 32 32 H 1.09002 * 109.47385 * 119.99491 * 2 1 3 33 33 H 1.07998 * 119.99864 * 359.97438 * 4 3 2 34 34 H 1.08003 * 119.99737 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.46720 * 329.99427 * 7 6 5 36 36 H 1.08998 * 109.47099 * 209.99979 * 7 6 5 37 37 H 1.08997 * 109.46505 * 180.02562 * 10 8 7 38 38 H 1.08997 * 109.47114 * 60.00590 * 10 8 7 39 39 H 1.09000 * 109.47236 * 299.99769 * 10 8 7 40 40 H 1.09000 * 109.48682 * 296.77810 * 12 11 8 41 41 H 1.09000 * 109.48573 * 56.84666 * 12 11 8 42 42 H 1.08999 * 109.49278 * 298.43188 * 13 12 11 43 43 H 1.08998 * 109.50614 * 178.37676 * 13 12 11 44 44 H 1.09003 * 109.46983 * 178.99446 * 15 14 13 45 45 H 1.09001 * 109.47063 * 298.98959 * 15 14 13 46 46 H 0.96994 * 120.00371 * 179.97438 * 19 18 16 47 47 H 1.09000 * 109.48992 * 299.35708 * 24 14 13 48 48 H 1.09002 * 109.49139 * 179.28605 * 24 14 13 49 49 H 1.09001 * 109.48990 * 303.15627 * 25 11 8 50 50 H 1.08996 * 109.49077 * 63.20155 * 25 11 8 51 51 H 1.08005 * 120.00023 * 179.72800 * 26 6 5 52 52 H 1.08005 * 119.99942 * 180.24877 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7239 3.3757 1.1971 6 6 2.9542 4.0273 -0.0001 7 6 3.4565 5.4482 -0.0001 8 6 4.9865 5.4483 -0.0001 9 1 5.3498 4.8589 -0.8420 10 6 5.4963 6.8854 -0.1259 11 7 5.4761 4.8631 1.2551 12 6 5.0285 5.6498 2.4129 13 6 5.4910 4.9650 3.7011 14 7 6.9551 4.8394 3.6877 15 6 7.4448 4.2541 4.9429 16 6 6.8248 2.8946 5.1388 17 1 6.1998 2.4699 4.3672 18 6 7.0556 2.1930 6.3030 19 7 6.5142 1.0067 6.4742 20 14 8.1374 2.9272 7.6372 21 1 7.2997 3.7189 8.5736 22 1 8.8152 1.8355 8.3816 23 1 9.1571 3.8109 7.0172 24 6 7.4028 4.0527 2.5299 25 6 6.9403 4.7376 1.2417 26 6 2.7184 3.3776 -1.1972 27 6 2.2622 2.0727 -1.1972 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0824 1.5636 2.1324 34 1 2.9035 3.8850 2.1324 35 1 3.0930 5.9620 0.8898 36 1 3.0930 5.9620 -0.8901 37 1 6.5863 6.8854 -0.1263 38 1 5.1330 7.4748 0.7159 39 1 5.1330 7.3196 -1.0573 40 1 5.4561 6.6510 2.3595 41 1 3.9406 5.7178 2.4075 42 1 5.0416 3.9741 3.7678 43 1 5.1850 5.5616 4.5605 44 1 8.5295 4.1560 4.8992 45 1 7.1719 4.9014 5.7764 46 1 6.6769 0.5129 7.2930 47 1 6.9751 3.0515 2.5833 48 1 8.4906 3.9846 2.5352 49 1 7.2462 4.1406 0.3825 50 1 7.3896 5.7283 1.1747 51 1 2.8941 3.8882 -2.1326 52 1 2.0818 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173243508.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:04 Heat of formation + Delta-G solvation = 23.185239 kcal Electronic energy + Delta-G solvation = -27538.274170 eV Core-core repulsion = 24115.911594 eV Total energy + Delta-G solvation = -3422.362576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.79455 -38.76132 -36.28382 -34.30708 -32.62289 -31.51140 -30.74718 -30.27031 -29.68305 -27.63971 -26.39421 -24.82698 -23.21271 -22.97676 -22.40610 -21.63675 -20.63020 -19.91218 -18.62977 -16.72793 -16.22417 -16.07193 -15.23007 -15.11683 -14.80325 -14.47594 -14.30741 -14.21849 -13.79720 -13.66491 -13.46613 -13.32322 -13.20282 -12.93325 -12.80247 -12.61787 -12.30372 -12.04070 -11.81534 -11.75012 -11.57857 -11.36938 -11.24471 -11.07103 -10.94363 -10.84528 -10.64946 -10.61026 -10.47145 -10.33919 -10.12243 -10.00048 -9.83727 -9.44113 -8.64123 -8.56848 -8.24037 -7.89832 -7.15489 -6.07567 -4.06946 1.57814 1.68699 3.28443 3.36328 3.40329 3.97172 4.16756 4.41557 4.79013 4.91038 4.91482 4.99327 5.06073 5.13796 5.22147 5.25798 5.28318 5.36404 5.39967 5.48250 5.52536 5.57197 5.61237 5.70812 5.73982 5.75834 5.83332 5.86723 5.88067 5.91015 5.97382 6.03952 6.08074 6.12798 6.16736 6.25060 6.31531 6.35874 6.38205 6.60994 6.67070 6.82407 6.86405 6.90978 6.92220 6.96132 7.08673 7.27388 7.43701 7.45839 7.59530 8.09416 8.13783 8.48215 8.97051 9.55479 11.05309 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010910 B = 0.004169 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.765186 B = 6713.845685 C = 8758.625676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.114 4.114 5 C -0.084 4.084 6 C -0.069 4.069 7 C -0.074 4.074 8 C 0.086 3.914 9 H 0.079 0.921 10 C -0.186 4.186 11 N -0.521 5.521 12 C 0.053 3.947 13 C 0.063 3.937 14 N -0.536 5.536 15 C 0.155 3.845 16 C -0.548 4.548 17 H 0.077 0.923 18 C 0.072 3.928 19 N -0.899 5.899 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 C 0.063 3.937 25 C 0.060 3.940 26 C -0.122 4.122 27 C -0.123 4.123 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.036 0.964 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.064 0.936 44 H 0.025 0.975 45 H 0.024 0.976 46 H 0.262 0.738 47 H 0.052 0.948 48 H 0.065 0.935 49 H 0.067 0.933 50 H 0.035 0.965 51 H 0.113 0.887 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.797 6.530 -16.071 19.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.132 4.132 5 C -0.102 4.102 6 C -0.069 4.069 7 C -0.112 4.112 8 C -0.022 4.022 9 H 0.097 0.903 10 C -0.245 4.245 11 N -0.245 5.245 12 C -0.075 4.075 13 C -0.065 4.065 14 N -0.260 5.260 15 C 0.028 3.972 16 C -0.587 4.587 17 H 0.095 0.905 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.705 3.295 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.190 1.190 24 C -0.066 4.066 25 C -0.068 4.068 26 C -0.140 4.140 27 C -0.141 4.141 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.043 0.957 45 H 0.042 0.958 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.083 0.917 49 H 0.085 0.915 50 H 0.053 0.947 51 H 0.131 0.869 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.801 6.375 -15.935 19.288 hybrid contribution 0.680 0.152 0.880 1.123 sum -8.121 6.527 -15.055 18.309 Atomic orbital electron populations 1.21733 0.95069 1.01375 1.02012 1.20526 0.95870 0.93141 1.02741 1.19806 0.99918 0.95955 0.93293 1.21058 0.99632 0.95054 0.97417 1.21008 0.96864 0.94525 0.97800 1.19613 0.98430 0.95892 0.93011 1.20714 0.94653 0.93374 1.02449 1.21660 0.93985 0.93183 0.93420 0.90309 1.22477 1.01768 0.98359 1.01908 1.62319 1.11044 1.49874 1.01301 1.22314 0.99166 0.95206 0.90790 1.21943 0.89550 1.00268 0.94770 1.62613 1.09843 1.49792 1.03761 1.20138 0.95713 0.93910 0.87436 1.21703 1.31470 1.01489 1.04003 0.90461 1.24963 0.95275 0.94617 0.98150 1.69930 1.44355 1.12573 1.26843 0.86826 0.81436 0.79017 0.82267 1.20269 1.21376 1.18969 1.21939 0.99079 0.96547 0.88991 1.22188 0.87045 0.99158 0.98398 1.20894 1.00944 0.94951 0.97219 1.20850 1.01278 0.94937 0.97085 0.92677 0.92556 0.92837 0.91425 0.90963 0.86354 0.86047 0.90800 0.91120 0.92275 0.92157 0.92564 0.94604 0.91149 0.92666 0.91716 0.95652 0.95832 0.92771 0.92952 0.91675 0.91506 0.94658 0.86883 0.86914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.89 37.16 0.37 -1.01 16 2 C -0.09 -0.94 6.06 -27.88 -0.17 -1.11 16 3 C -0.09 -1.17 5.13 -104.62 -0.54 -1.71 16 4 C -0.11 -1.65 9.70 -39.58 -0.38 -2.03 16 5 C -0.08 -1.22 9.31 -39.59 -0.37 -1.59 16 6 C -0.07 -0.89 4.95 -104.62 -0.52 -1.41 16 7 C -0.07 -0.83 4.65 -27.88 -0.13 -0.96 16 8 C 0.09 1.04 2.34 -67.71 -0.16 0.88 16 9 H 0.08 0.97 8.11 -51.92 -0.42 0.55 16 10 C -0.19 -1.98 8.49 37.16 0.32 -1.66 16 11 N -0.52 -7.75 4.08 -226.49 -0.92 -8.68 16 12 C 0.05 0.81 4.56 -3.77 -0.02 0.80 16 13 C 0.06 1.22 5.24 -3.77 -0.02 1.21 16 14 N -0.54 -11.19 4.92 -235.91 -1.16 -12.35 16 15 C 0.15 3.74 4.21 -4.98 -0.02 3.72 16 16 C -0.55 -15.23 8.21 -34.44 -0.28 -15.51 16 17 H 0.08 2.36 6.07 -52.49 -0.32 2.04 16 18 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 20 Si 0.88 21.50 27.37 -169.99 -4.65 16.84 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.27 -6.28 6.69 56.52 0.38 -5.90 16 24 C 0.06 1.23 5.32 -3.76 -0.02 1.21 16 25 C 0.06 0.95 5.25 -3.76 -0.02 0.93 16 26 C -0.12 -1.47 9.70 -39.58 -0.38 -1.86 16 27 C -0.12 -1.50 9.70 -39.58 -0.38 -1.89 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 32 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 33 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.12 1.83 6.82 -52.48 -0.36 1.47 16 35 H 0.07 0.83 6.06 -51.93 -0.31 0.51 16 36 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 37 H 0.06 0.66 6.59 -51.93 -0.34 0.32 16 38 H 0.06 0.67 6.46 -51.93 -0.34 0.33 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.04 0.54 6.46 -51.93 -0.34 0.21 16 41 H 0.07 0.98 5.12 -51.93 -0.27 0.71 16 42 H 0.06 1.24 6.62 -51.93 -0.34 0.89 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.03 0.62 7.52 -51.93 -0.39 0.23 16 45 H 0.02 0.57 7.30 -51.93 -0.38 0.19 16 46 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.05 1.19 6.78 -51.93 -0.35 0.84 16 48 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 49 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 50 H 0.04 0.54 6.60 -51.93 -0.34 0.20 16 51 H 0.11 1.13 8.06 -52.48 -0.42 0.70 16 52 H 0.11 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 389.61 15.07 5.87 5.87 Total: -1.00 -29.94 389.61 -12.06 -42.00 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -9.14 Total: 2.96 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -2.83 Total: -20.01 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -1.31 Total: -47.66 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.65 Total: 16.84 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.94 -12.06 -42.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173243508.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.183 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds