Wall clock time and date at job start Tue Mar 31 2020 10:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46786 * 2 1 4 4 C 1.38236 * 120.00340 * 90.00282 * 3 2 1 5 5 C 1.38233 * 120.00115 * 179.97438 * 4 3 2 6 6 C 1.38231 * 120.00128 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00202 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47233 * 89.99422 * 7 6 5 9 9 H 1.09007 * 109.46693 * 55.00445 * 8 7 6 10 10 C 1.53004 * 109.46803 * 175.00003 * 8 7 6 11 11 N 1.46894 * 109.47197 * 295.00103 * 8 7 6 12 12 C 1.46956 * 111.00191 * 298.80021 * 11 8 7 13 13 C 1.53048 * 109.36312 * 176.81274 * 12 11 8 14 14 N 1.46956 * 109.36521 * 58.40083 * 13 12 11 15 15 C 1.46902 * 110.99746 * 176.81166 * 14 13 12 16 16 C 1.50697 * 109.47285 * 58.99319 * 15 14 13 17 17 H 1.07995 * 120.00124 * 4.98729 * 16 15 14 18 18 C 1.37874 * 120.00031 * 184.98936 * 16 15 14 19 19 N 1.31516 * 120.00497 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99958 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47002 * 90.00316 * 20 18 16 22 22 H 1.48508 * 109.47222 * 210.00226 * 20 18 16 23 23 H 1.48497 * 109.47077 * 329.99951 * 20 18 16 24 24 C 1.46957 * 110.88156 * 300.67450 * 14 13 12 25 25 C 1.46956 * 110.99804 * 174.99989 * 11 8 7 26 26 C 1.38241 * 119.99944 * 0.24738 * 6 5 4 27 27 C 1.38230 * 119.99685 * 359.49961 * 26 6 5 28 28 H 1.08994 * 109.46567 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46752 * 300.00027 * 1 2 3 30 30 H 1.08995 * 109.47041 * 59.99941 * 1 2 3 31 31 H 1.08997 * 109.47263 * 240.00021 * 2 1 3 32 32 H 1.09002 * 109.47385 * 119.99491 * 2 1 3 33 33 H 1.07998 * 119.99864 * 359.97438 * 4 3 2 34 34 H 1.08003 * 119.99737 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.46720 * 329.99427 * 7 6 5 36 36 H 1.08998 * 109.47099 * 209.99979 * 7 6 5 37 37 H 1.08997 * 109.46505 * 180.02562 * 10 8 7 38 38 H 1.08997 * 109.47114 * 60.00590 * 10 8 7 39 39 H 1.09000 * 109.47236 * 299.99769 * 10 8 7 40 40 H 1.09000 * 109.48682 * 296.77810 * 12 11 8 41 41 H 1.09000 * 109.48573 * 56.84666 * 12 11 8 42 42 H 1.08999 * 109.49278 * 298.43188 * 13 12 11 43 43 H 1.08998 * 109.50614 * 178.37676 * 13 12 11 44 44 H 1.09003 * 109.46983 * 178.99446 * 15 14 13 45 45 H 1.09001 * 109.47063 * 298.98959 * 15 14 13 46 46 H 0.96994 * 120.00371 * 179.97438 * 19 18 16 47 47 H 1.09000 * 109.48992 * 299.35708 * 24 14 13 48 48 H 1.09002 * 109.49139 * 179.28605 * 24 14 13 49 49 H 1.09001 * 109.48990 * 303.15627 * 25 11 8 50 50 H 1.08996 * 109.49077 * 63.20155 * 25 11 8 51 51 H 1.08005 * 120.00023 * 179.72800 * 26 6 5 52 52 H 1.08005 * 119.99942 * 180.24877 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7239 3.3757 1.1971 6 6 2.9542 4.0273 -0.0001 7 6 3.4565 5.4482 -0.0001 8 6 4.9865 5.4483 -0.0001 9 1 5.3498 4.8589 -0.8420 10 6 5.4963 6.8854 -0.1259 11 7 5.4761 4.8631 1.2551 12 6 5.0285 5.6498 2.4129 13 6 5.4910 4.9650 3.7011 14 7 6.9551 4.8394 3.6877 15 6 7.4448 4.2541 4.9429 16 6 6.8248 2.8946 5.1388 17 1 6.1998 2.4699 4.3672 18 6 7.0556 2.1930 6.3030 19 7 6.5142 1.0067 6.4742 20 14 8.1374 2.9272 7.6372 21 1 7.2997 3.7189 8.5736 22 1 8.8152 1.8355 8.3816 23 1 9.1571 3.8109 7.0172 24 6 7.4028 4.0527 2.5299 25 6 6.9403 4.7376 1.2417 26 6 2.7184 3.3776 -1.1972 27 6 2.2622 2.0727 -1.1972 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0824 1.5636 2.1324 34 1 2.9035 3.8850 2.1324 35 1 3.0930 5.9620 0.8898 36 1 3.0930 5.9620 -0.8901 37 1 6.5863 6.8854 -0.1263 38 1 5.1330 7.4748 0.7159 39 1 5.1330 7.3196 -1.0573 40 1 5.4561 6.6510 2.3595 41 1 3.9406 5.7178 2.4075 42 1 5.0416 3.9741 3.7678 43 1 5.1850 5.5616 4.5605 44 1 8.5295 4.1560 4.8992 45 1 7.1719 4.9014 5.7764 46 1 6.6769 0.5129 7.2930 47 1 6.9751 3.0515 2.5833 48 1 8.4906 3.9846 2.5352 49 1 7.2462 4.1406 0.3825 50 1 7.3896 5.7283 1.1747 51 1 2.8941 3.8882 -2.1326 52 1 2.0818 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173243508.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:04 Heat of formation + Delta-G solvation = 5.716318 kcal Electronic energy + Delta-G solvation = -27539.031679 eV Core-core repulsion = 24115.911594 eV Total energy + Delta-G solvation = -3423.120085 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.92476 -39.96432 -37.70662 -35.41538 -34.54688 -32.85855 -31.92005 -31.55601 -30.75759 -29.35468 -27.29890 -26.46062 -24.53706 -24.07224 -23.46548 -23.28231 -21.82548 -21.09593 -20.10944 -18.77455 -17.43463 -17.08806 -16.57527 -16.20001 -16.13261 -16.00088 -15.82612 -15.59617 -15.12494 -14.72441 -14.58981 -14.53370 -14.43099 -14.27561 -14.09968 -13.79391 -13.59229 -13.54480 -13.03341 -12.94632 -12.73975 -12.67422 -12.48228 -12.37759 -12.26764 -12.12752 -11.98240 -11.95919 -11.79032 -11.73624 -11.60070 -11.47921 -11.34424 -11.24854 -10.79458 -9.68830 -9.25241 -9.11197 -8.93105 -8.31541 -6.36737 0.56492 0.64688 1.33801 1.35181 1.47502 2.32763 2.95115 3.02115 3.03216 3.32518 3.86679 3.94528 4.01430 4.03828 4.10197 4.23502 4.25352 4.30135 4.42728 4.47832 4.49252 4.50556 4.51855 4.60223 4.65571 4.67242 4.70298 4.74902 4.83165 4.90066 4.90871 4.98121 4.99889 5.05296 5.06796 5.10025 5.13088 5.17510 5.20551 5.23901 5.31468 5.33593 5.39278 5.43168 5.52133 5.66211 5.84045 5.88115 6.07064 6.19767 6.26952 6.29766 6.41436 6.42259 6.70698 7.29824 8.84947 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010910 B = 0.004169 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.765186 B = 6713.845685 C = 8758.625676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 C -0.098 4.098 4 C -0.142 4.142 5 C -0.104 4.104 6 C -0.074 4.074 7 C -0.070 4.070 8 C 0.089 3.911 9 H 0.082 0.918 10 C -0.179 4.179 11 N -0.539 5.539 12 C 0.069 3.931 13 C 0.066 3.934 14 N -0.528 5.528 15 C 0.161 3.839 16 C -0.546 4.546 17 H 0.031 0.969 18 C 0.010 3.990 19 N -0.948 5.948 20 Si 0.950 3.050 21 H -0.266 1.266 22 H -0.284 1.284 23 H -0.247 1.247 24 C 0.065 3.935 25 C 0.072 3.928 26 C -0.120 4.120 27 C -0.126 4.126 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.084 0.916 42 H 0.011 0.989 43 H 0.065 0.935 44 H 0.028 0.972 45 H 0.029 0.971 46 H 0.265 0.735 47 H 0.007 0.993 48 H 0.068 0.932 49 H 0.080 0.920 50 H 0.051 0.949 51 H 0.144 0.856 52 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.303 9.042 -18.330 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C -0.098 4.098 4 C -0.160 4.160 5 C -0.122 4.122 6 C -0.074 4.074 7 C -0.107 4.107 8 C -0.019 4.019 9 H 0.100 0.900 10 C -0.238 4.238 11 N -0.264 5.264 12 C -0.059 4.059 13 C -0.063 4.063 14 N -0.251 5.251 15 C 0.034 3.966 16 C -0.585 4.585 17 H 0.049 0.951 18 C -0.187 4.187 19 N -0.589 5.589 20 Si 0.774 3.226 21 H -0.191 1.191 22 H -0.210 1.210 23 H -0.170 1.170 24 C -0.064 4.064 25 C -0.056 4.056 26 C -0.138 4.138 27 C -0.144 4.144 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.102 0.898 42 H 0.029 0.971 43 H 0.083 0.917 44 H 0.046 0.954 45 H 0.047 0.953 46 H 0.074 0.926 47 H 0.026 0.974 48 H 0.087 0.913 49 H 0.099 0.901 50 H 0.069 0.931 51 H 0.162 0.838 52 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.315 8.910 -18.220 21.920 hybrid contribution 0.454 -0.717 1.507 1.729 sum -7.861 8.193 -16.713 20.205 Atomic orbital electron populations 1.21695 0.93787 1.02311 1.01889 1.20569 0.96984 0.92035 1.02774 1.20048 0.99738 0.96877 0.93125 1.21112 1.01468 0.95680 0.97752 1.20995 0.98251 0.94770 0.98161 1.19826 0.98119 0.96905 0.92533 1.20744 0.93908 0.92272 1.03775 1.21711 0.94428 0.94192 0.91522 0.89973 1.22398 1.01406 0.96893 1.03060 1.62254 1.10527 1.50986 1.02622 1.22122 0.99959 0.94955 0.88861 1.21941 0.88362 0.98394 0.97583 1.62663 1.10666 1.48892 1.02916 1.20010 0.95454 0.91809 0.89372 1.21861 1.30581 1.03181 1.02833 0.95085 1.25933 0.96926 0.94920 1.00952 1.70093 1.46434 1.14438 1.27892 0.85666 0.79695 0.78452 0.78826 1.19140 1.21017 1.17005 1.21956 0.99086 0.94678 0.90640 1.22040 0.87794 0.99546 0.96243 1.21263 0.99634 0.94914 0.97952 1.21200 1.00423 0.95277 0.97507 0.91211 0.93660 0.91933 0.89902 0.92374 0.88103 0.87900 0.91060 0.88151 0.92704 0.92464 0.90176 0.93246 0.89755 0.97070 0.91682 0.95436 0.95285 0.92599 0.97437 0.91309 0.90124 0.93129 0.83833 0.84343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.89 71.98 0.71 -1.88 16 2 C -0.09 -1.92 6.06 29.85 0.18 -1.74 16 3 C -0.10 -2.59 5.13 -19.86 -0.10 -2.69 16 4 C -0.14 -4.46 9.70 22.27 0.22 -4.25 16 5 C -0.10 -3.18 9.31 22.27 0.21 -2.97 16 6 C -0.07 -1.82 4.95 -19.86 -0.10 -1.92 16 7 C -0.07 -1.36 4.65 29.85 0.14 -1.22 16 8 C 0.09 1.90 2.34 44.92 0.11 2.00 16 9 H 0.08 1.74 8.11 -2.38 -0.02 1.72 16 10 C -0.18 -3.11 8.49 71.98 0.61 -2.49 16 11 N -0.54 -15.62 4.08 -870.47 -3.55 -19.17 16 12 C 0.07 2.07 4.56 86.31 0.39 2.46 16 13 C 0.07 2.64 5.24 86.31 0.45 3.09 16 14 N -0.53 -22.36 4.92 -900.27 -4.43 -26.78 16 15 C 0.16 7.88 4.21 85.56 0.36 8.24 16 16 C -0.55 -31.88 8.21 25.60 0.21 -31.67 16 17 H 0.03 2.06 6.07 -2.91 -0.02 2.04 16 18 C 0.01 0.62 5.47 84.65 0.46 1.08 16 19 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 20 Si 0.95 44.75 27.37 68.60 1.88 46.63 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.25 -10.80 6.69 99.48 0.67 -10.14 16 24 C 0.07 2.60 5.32 86.31 0.46 3.06 16 25 C 0.07 2.18 5.25 86.31 0.45 2.63 16 26 C -0.12 -2.59 9.70 22.27 0.22 -2.38 16 27 C -0.13 -2.85 9.70 22.27 0.22 -2.64 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.91 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.57 8.09 -2.39 -0.02 1.55 16 32 H 0.06 1.42 8.09 -2.39 -0.02 1.40 16 33 H 0.10 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.10 3.42 6.82 -2.91 -0.02 3.40 16 35 H 0.07 1.45 6.06 -2.39 -0.01 1.43 16 36 H 0.10 1.42 8.08 -2.39 -0.02 1.40 16 37 H 0.05 1.02 6.59 -2.39 -0.02 1.00 16 38 H 0.06 1.05 6.46 -2.39 -0.02 1.03 16 39 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.05 1.38 6.46 -2.39 -0.02 1.37 16 41 H 0.08 2.31 5.12 -2.39 -0.01 2.30 16 42 H 0.01 0.54 6.62 -2.39 -0.02 0.52 16 43 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.03 1.34 7.52 -2.39 -0.02 1.32 16 45 H 0.03 1.39 7.30 -2.39 -0.02 1.38 16 46 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 47 H 0.01 0.35 6.78 -2.39 -0.02 0.34 16 48 H 0.07 2.64 8.12 -2.39 -0.02 2.62 16 49 H 0.08 2.23 8.12 -2.39 -0.02 2.22 16 50 H 0.05 1.41 6.60 -2.39 -0.02 1.40 16 51 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 52 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -69.07 389.61 0.22 -68.85 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.83 Total: 23.90 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 5.19 Total: -33.27 kcal Atomic # 7 Polarization: -98.43 SS G_CDS: -7.68 Total: -106.11 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Total: -69.07 0.22 -68.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173243508.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.567 kcal (2) G-P(sol) polarization free energy of solvation -69.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds