Wall clock time and date at job start Tue Mar 31 2020 11:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47270 * 2 1 4 4 C 1.52995 * 109.46882 * 119.99942 * 2 1 3 5 5 C 1.53003 * 109.46759 * 174.16898 * 4 2 1 6 6 H 1.08997 * 109.47013 * 54.42995 * 5 4 2 7 7 N 1.46904 * 109.47454 * 294.42659 * 5 4 2 8 8 C 1.46896 * 110.99923 * 152.21124 * 7 5 4 9 9 C 1.53000 * 109.47357 * 275.72766 * 8 7 5 10 10 C 1.53006 * 109.47094 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47179 * 59.99597 * 10 9 8 12 12 C 1.50701 * 109.47345 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99814 * 119.99967 * 12 11 10 14 14 C 1.37874 * 120.00226 * 300.00652 * 12 11 10 15 15 N 1.31522 * 119.99759 * 359.97438 * 14 12 11 16 16 Si 1.86788 * 120.00286 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47235 * 89.99701 * 16 14 12 18 18 H 1.48503 * 109.47618 * 210.00047 * 16 14 12 19 19 H 1.48506 * 109.47218 * 330.00325 * 16 14 12 20 20 C 1.52993 * 109.47400 * 300.00452 * 11 10 9 21 21 C 1.52999 * 109.46928 * 155.72356 * 8 7 5 22 22 C 1.50699 * 109.47135 * 174.42939 * 5 4 2 23 23 C 1.38221 * 119.62304 * 125.00030 * 22 5 4 24 24 C 1.38636 * 119.16524 * 180.27804 * 23 22 5 25 25 C 1.38662 * 118.41593 * 359.48002 * 24 23 22 26 26 C 1.38181 * 119.16804 * 0.47693 * 25 24 23 27 27 N 1.31864 * 119.61829 * 304.97826 * 22 5 4 28 28 H 1.09006 * 109.47071 * 300.00319 * 1 2 3 29 29 H 1.09006 * 109.47270 * 59.99910 * 1 2 3 30 30 H 1.08998 * 109.47444 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46667 * 240.00077 * 2 1 3 32 32 H 1.09001 * 109.46947 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46598 * 300.00453 * 3 2 1 34 34 H 1.08997 * 109.46795 * 59.99759 * 3 2 1 35 35 H 1.09000 * 109.47540 * 54.17436 * 4 2 1 36 36 H 1.08997 * 109.47708 * 294.16600 * 4 2 1 37 37 H 1.00902 * 110.99712 * 28.26087 * 7 5 4 38 38 H 1.09004 * 109.47052 * 35.72681 * 8 7 5 39 39 H 1.08997 * 109.46688 * 299.99735 * 9 8 7 40 40 H 1.08996 * 109.47133 * 60.00233 * 9 8 7 41 41 H 1.09000 * 109.46684 * 300.00069 * 10 9 8 42 42 H 1.08998 * 109.46926 * 180.02562 * 10 9 8 43 43 H 1.09004 * 109.46989 * 60.00119 * 11 10 9 44 44 H 0.96996 * 119.99546 * 179.97438 * 15 14 12 45 45 H 1.09000 * 109.47219 * 299.99990 * 20 11 10 46 46 H 1.09000 * 109.47451 * 180.02562 * 20 11 10 47 47 H 1.08998 * 109.47677 * 300.00303 * 21 8 7 48 48 H 1.09004 * 109.46989 * 60.00287 * 21 8 7 49 49 H 1.08005 * 120.41551 * 0.02562 * 23 22 5 50 50 H 1.08000 * 120.78497 * 179.72665 * 24 23 22 51 51 H 1.08007 * 120.41432 * 180.22158 * 25 24 23 52 52 H 1.07997 * 119.62373 * 179.76631 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5629 -0.8494 1.1781 6 1 4.0037 0.1357 1.0249 7 7 3.9287 -1.7288 0.0596 8 6 5.2583 -1.3888 -0.4643 9 6 5.1324 -0.2427 -1.4701 10 6 6.5172 0.1109 -2.0163 11 6 7.1196 -1.1125 -2.7099 12 6 8.4833 -0.7640 -3.2484 13 1 9.3532 -1.3056 -2.9072 14 6 8.6205 0.2462 -4.1765 15 7 7.5611 0.9055 -4.5923 16 14 10.3108 0.6786 -4.8435 17 1 10.5878 -0.1343 -6.0550 18 1 10.3501 2.1208 -5.1954 19 1 11.3386 0.3931 -3.8103 20 6 7.2455 -2.2585 -1.7041 21 6 5.8613 -2.6121 -1.1577 22 6 4.0785 -1.4354 2.4671 23 6 4.8628 -2.5731 2.4349 24 6 5.3272 -3.1076 3.6269 25 6 4.9928 -2.4685 4.8112 26 6 4.2052 -1.3341 4.7652 27 7 3.7765 -0.8567 3.6129 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.5940 -1.7144 1.3030 36 1 1.7644 -0.1507 2.1362 37 1 3.2328 -1.6941 -0.6701 38 1 5.9050 -1.0814 0.3576 39 1 4.4857 -0.5501 -2.2920 40 1 4.7028 0.6287 -0.9761 41 1 7.1642 0.4181 -1.1946 42 1 6.4275 0.9277 -2.7325 43 1 6.4726 -1.4197 -3.5315 44 1 7.6577 1.6164 -5.2450 45 1 7.8925 -1.9514 -0.8824 46 1 7.6751 -3.1300 -2.1981 47 1 5.9510 -3.4285 -0.4412 48 1 5.2145 -2.9194 -1.9796 49 1 5.1074 -3.0422 1.4933 50 1 5.9382 -3.9981 3.6324 51 1 5.3402 -2.8550 5.7580 52 1 3.9372 -0.8327 5.6834 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328983.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:25 Heat of formation + Delta-G solvation = 0.694938 kcal Electronic energy + Delta-G solvation = -27667.426006 eV Core-core repulsion = 24244.088177 eV Total energy + Delta-G solvation = -3423.337829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.39025 -38.54292 -36.90236 -34.41855 -32.75912 -32.28765 -31.00019 -29.66250 -29.19826 -27.26758 -27.06567 -24.46576 -23.97610 -23.30459 -21.63039 -21.20238 -20.60972 -19.62614 -18.75335 -16.82941 -16.33968 -16.32665 -15.80623 -15.38521 -14.82141 -14.60899 -14.41336 -14.31657 -13.77325 -13.46923 -13.34109 -13.06796 -12.97790 -12.76949 -12.56405 -12.45802 -12.23232 -11.98624 -11.78816 -11.64349 -11.46041 -11.19651 -10.99354 -10.87306 -10.71917 -10.66761 -10.60688 -10.40522 -10.24000 -10.14825 -9.94837 -9.78196 -9.39214 -9.35490 -9.00321 -8.83051 -8.65737 -8.31431 -8.02268 -5.95811 -4.01682 1.18973 1.35831 3.31123 3.38074 3.41331 3.84418 4.03298 4.45551 4.56062 4.72682 4.84425 4.88765 4.92200 5.02069 5.14874 5.25835 5.32466 5.38017 5.39004 5.48681 5.57730 5.62810 5.64565 5.73237 5.76878 5.85550 5.92066 5.93493 5.95519 6.02518 6.12607 6.18372 6.19925 6.24010 6.30202 6.35876 6.38216 6.43106 6.46760 6.65347 6.68890 6.78128 6.83092 6.93482 7.13434 7.23130 7.35955 7.53379 7.64110 7.77618 8.05062 8.06696 8.18082 8.50522 9.02657 9.62911 11.09531 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012882 B = 0.003707 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.054611 B = 7550.474565 C = 8957.407452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 C -0.151 4.151 4 C -0.106 4.106 5 C 0.135 3.865 6 H 0.071 0.929 7 N -0.685 5.685 8 C 0.088 3.912 9 C -0.142 4.142 10 C -0.105 4.105 11 C 0.049 3.951 12 C -0.512 4.512 13 H 0.053 0.947 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.887 3.113 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.109 4.109 21 C -0.100 4.100 22 C 0.140 3.860 23 C -0.144 4.144 24 C -0.084 4.084 25 C -0.184 4.184 26 C 0.091 3.909 27 N -0.486 5.486 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.346 0.654 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.041 0.959 41 H 0.031 0.969 42 H 0.090 0.910 43 H 0.024 0.976 44 H 0.258 0.742 45 H 0.045 0.955 46 H 0.047 0.953 47 H 0.049 0.951 48 H 0.055 0.945 49 H 0.152 0.848 50 H 0.130 0.870 51 H 0.128 0.872 52 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.752 -4.642 14.900 19.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.208 4.208 4 C -0.145 4.145 5 C 0.024 3.976 6 H 0.089 0.911 7 N -0.317 5.317 8 C -0.021 4.021 9 C -0.181 4.181 10 C -0.144 4.144 11 C 0.031 3.969 12 C -0.550 4.550 13 H 0.071 0.929 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.716 3.284 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.147 4.147 21 C -0.138 4.138 22 C 0.002 3.998 23 C -0.163 4.163 24 C -0.110 4.110 25 C -0.204 4.204 26 C -0.066 4.066 27 N -0.195 5.195 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.168 0.832 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.108 0.892 43 H 0.042 0.958 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.170 0.830 50 H 0.148 0.852 51 H 0.146 0.854 52 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.101 -4.253 15.176 19.871 hybrid contribution 1.388 0.358 -0.751 1.618 sum -10.713 -3.895 14.425 18.385 Atomic orbital electron populations 1.21804 0.95157 1.01552 1.01623 1.21173 0.95786 0.96650 0.98254 1.21935 1.01591 0.95734 1.01583 1.21747 0.93140 1.01000 0.98566 1.20205 0.95216 0.94627 0.87521 0.91133 1.60582 1.05114 1.54212 1.11828 1.21725 0.88672 0.95391 0.96323 1.22300 1.01015 0.96836 0.97978 1.21544 0.91275 1.02531 0.99002 1.18638 0.95889 0.90025 0.92338 1.21252 0.93376 1.17339 1.23066 0.92877 1.24958 0.96341 0.96273 0.96410 1.69878 1.28265 1.23232 1.31620 0.86671 0.84968 0.77505 0.79303 1.20772 1.21321 1.20007 1.21616 0.94044 0.99800 0.99223 1.21497 0.97686 0.95868 0.98773 1.21237 0.93462 0.92029 0.93072 1.22243 0.97448 0.96850 0.99789 1.21662 0.97572 0.99192 0.92574 1.22068 1.01119 0.98093 0.99114 1.22603 0.94516 0.93697 0.95766 1.67323 1.22087 1.31973 0.98160 0.92827 0.92721 0.92796 0.91071 0.92198 0.92716 0.92737 0.91499 0.90324 0.83236 0.91267 0.92763 0.94063 0.95061 0.89160 0.95798 0.93165 0.93625 0.93405 0.93235 0.92644 0.83005 0.85222 0.85397 0.83261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.19 37.16 0.34 -0.99 16 2 C -0.10 -1.06 2.83 -90.62 -0.26 -1.32 16 3 C -0.15 -1.71 8.97 37.16 0.33 -1.37 16 4 C -0.11 -1.21 4.16 -26.73 -0.11 -1.32 16 5 C 0.14 1.77 2.20 -68.86 -0.15 1.61 16 6 H 0.07 1.04 5.30 -51.93 -0.28 0.76 16 7 N -0.68 -9.11 4.84 -100.95 -0.49 -9.60 16 8 C 0.09 1.40 1.37 -67.72 -0.09 1.31 16 9 C -0.14 -2.58 5.16 -26.73 -0.14 -2.72 16 10 C -0.10 -2.40 4.98 -26.73 -0.13 -2.53 16 11 C 0.05 1.20 2.10 -91.78 -0.19 1.00 16 12 C -0.51 -13.95 8.56 -34.44 -0.29 -14.25 16 13 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 14 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 15 N -0.89 -25.24 11.32 55.43 0.63 -24.61 16 16 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.11 -2.20 5.14 -26.76 -0.14 -2.33 16 21 C -0.10 -1.67 5.47 -26.76 -0.15 -1.82 16 22 C 0.14 1.93 6.06 -82.59 -0.50 1.43 16 23 C -0.14 -1.89 8.81 -39.44 -0.35 -2.24 16 24 C -0.08 -0.95 10.18 -39.28 -0.40 -1.34 16 25 C -0.18 -1.89 10.11 -39.45 -0.40 -2.29 16 26 C 0.09 1.03 11.18 -17.55 -0.20 0.84 16 27 N -0.49 -6.62 9.77 -9.47 -0.09 -6.71 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.79 6.33 -51.93 -0.33 0.47 16 32 H 0.06 0.76 5.08 -51.93 -0.26 0.50 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.94 7.78 -51.93 -0.40 0.54 16 37 H 0.35 4.44 6.19 -39.29 -0.24 4.19 16 38 H 0.07 1.19 7.39 -51.93 -0.38 0.81 16 39 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 40 H 0.04 0.71 6.02 -51.93 -0.31 0.39 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 43 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.05 0.75 7.26 -51.93 -0.38 0.37 16 48 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 49 H 0.15 2.06 5.37 -52.48 -0.28 1.77 16 50 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 51 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 52 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 389.27 15.07 5.87 5.87 Total: -1.00 -28.20 389.27 -11.09 -39.29 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -9.07 Total: 6.26 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: -2.92 Total: -26.75 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.05 Total: -40.93 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.20 -11.09 -39.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328983.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.987 kcal (2) G-P(sol) polarization free energy of solvation -28.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds