Wall clock time and date at job start Tue Mar 31 2020 11:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47270 * 2 1 4 4 C 1.52995 * 109.46882 * 119.99942 * 2 1 3 5 5 C 1.53003 * 109.46759 * 174.16898 * 4 2 1 6 6 H 1.08997 * 109.47013 * 54.42995 * 5 4 2 7 7 N 1.46904 * 109.47454 * 294.42659 * 5 4 2 8 8 C 1.46896 * 110.99923 * 152.21124 * 7 5 4 9 9 C 1.53000 * 109.47357 * 275.72766 * 8 7 5 10 10 C 1.53006 * 109.47094 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47179 * 59.99597 * 10 9 8 12 12 C 1.50701 * 109.47345 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99814 * 119.99967 * 12 11 10 14 14 C 1.37874 * 120.00226 * 300.00652 * 12 11 10 15 15 N 1.31522 * 119.99759 * 359.97438 * 14 12 11 16 16 Si 1.86788 * 120.00286 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47235 * 89.99701 * 16 14 12 18 18 H 1.48503 * 109.47618 * 210.00047 * 16 14 12 19 19 H 1.48506 * 109.47218 * 330.00325 * 16 14 12 20 20 C 1.52993 * 109.47400 * 300.00452 * 11 10 9 21 21 C 1.52999 * 109.46928 * 155.72356 * 8 7 5 22 22 C 1.50699 * 109.47135 * 174.42939 * 5 4 2 23 23 C 1.38221 * 119.62304 * 125.00030 * 22 5 4 24 24 C 1.38636 * 119.16524 * 180.27804 * 23 22 5 25 25 C 1.38662 * 118.41593 * 359.48002 * 24 23 22 26 26 C 1.38181 * 119.16804 * 0.47693 * 25 24 23 27 27 N 1.31864 * 119.61829 * 304.97826 * 22 5 4 28 28 H 1.09006 * 109.47071 * 300.00319 * 1 2 3 29 29 H 1.09006 * 109.47270 * 59.99910 * 1 2 3 30 30 H 1.08998 * 109.47444 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46667 * 240.00077 * 2 1 3 32 32 H 1.09001 * 109.46947 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46598 * 300.00453 * 3 2 1 34 34 H 1.08997 * 109.46795 * 59.99759 * 3 2 1 35 35 H 1.09000 * 109.47540 * 54.17436 * 4 2 1 36 36 H 1.08997 * 109.47708 * 294.16600 * 4 2 1 37 37 H 1.00902 * 110.99712 * 28.26087 * 7 5 4 38 38 H 1.09004 * 109.47052 * 35.72681 * 8 7 5 39 39 H 1.08997 * 109.46688 * 299.99735 * 9 8 7 40 40 H 1.08996 * 109.47133 * 60.00233 * 9 8 7 41 41 H 1.09000 * 109.46684 * 300.00069 * 10 9 8 42 42 H 1.08998 * 109.46926 * 180.02562 * 10 9 8 43 43 H 1.09004 * 109.46989 * 60.00119 * 11 10 9 44 44 H 0.96996 * 119.99546 * 179.97438 * 15 14 12 45 45 H 1.09000 * 109.47219 * 299.99990 * 20 11 10 46 46 H 1.09000 * 109.47451 * 180.02562 * 20 11 10 47 47 H 1.08998 * 109.47677 * 300.00303 * 21 8 7 48 48 H 1.09004 * 109.46989 * 60.00287 * 21 8 7 49 49 H 1.08005 * 120.41551 * 0.02562 * 23 22 5 50 50 H 1.08000 * 120.78497 * 179.72665 * 24 23 22 51 51 H 1.08007 * 120.41432 * 180.22158 * 25 24 23 52 52 H 1.07997 * 119.62373 * 179.76631 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5629 -0.8494 1.1781 6 1 4.0037 0.1357 1.0249 7 7 3.9287 -1.7288 0.0596 8 6 5.2583 -1.3888 -0.4643 9 6 5.1324 -0.2427 -1.4701 10 6 6.5172 0.1109 -2.0163 11 6 7.1196 -1.1125 -2.7099 12 6 8.4833 -0.7640 -3.2484 13 1 9.3532 -1.3056 -2.9072 14 6 8.6205 0.2462 -4.1765 15 7 7.5611 0.9055 -4.5923 16 14 10.3108 0.6786 -4.8435 17 1 10.5878 -0.1343 -6.0550 18 1 10.3501 2.1208 -5.1954 19 1 11.3386 0.3931 -3.8103 20 6 7.2455 -2.2585 -1.7041 21 6 5.8613 -2.6121 -1.1577 22 6 4.0785 -1.4354 2.4671 23 6 4.8628 -2.5731 2.4349 24 6 5.3272 -3.1076 3.6269 25 6 4.9928 -2.4685 4.8112 26 6 4.2052 -1.3341 4.7652 27 7 3.7765 -0.8567 3.6129 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.5940 -1.7144 1.3030 36 1 1.7644 -0.1507 2.1362 37 1 3.2328 -1.6941 -0.6701 38 1 5.9050 -1.0814 0.3576 39 1 4.4857 -0.5501 -2.2920 40 1 4.7028 0.6287 -0.9761 41 1 7.1642 0.4181 -1.1946 42 1 6.4275 0.9277 -2.7325 43 1 6.4726 -1.4197 -3.5315 44 1 7.6577 1.6164 -5.2450 45 1 7.8925 -1.9514 -0.8824 46 1 7.6751 -3.1300 -2.1981 47 1 5.9510 -3.4285 -0.4412 48 1 5.2145 -2.9194 -1.9796 49 1 5.1074 -3.0422 1.4933 50 1 5.9382 -3.9981 3.6324 51 1 5.3402 -2.8550 5.7580 52 1 3.9372 -0.8327 5.6834 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328983.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:24 Heat of formation + Delta-G solvation = -12.674634 kcal Electronic energy + Delta-G solvation = -27668.005754 eV Core-core repulsion = 24244.088177 eV Total energy + Delta-G solvation = -3423.917577 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.35219 -39.81978 -38.13862 -35.74961 -34.30375 -33.35313 -32.25255 -31.29094 -30.42519 -28.54359 -28.03629 -26.03490 -25.16705 -24.20446 -23.22252 -22.35049 -22.00667 -20.65784 -20.33242 -18.38875 -17.70129 -17.31143 -17.03153 -16.54212 -16.28393 -15.83122 -15.59998 -15.30786 -14.85724 -14.83456 -14.59836 -14.46403 -14.20752 -14.01051 -13.87182 -13.69914 -13.40703 -13.19043 -13.02862 -12.89914 -12.78805 -12.55006 -12.49765 -12.40256 -12.17987 -12.03294 -11.77479 -11.76399 -11.65746 -11.55514 -11.43160 -11.13988 -10.78685 -10.67803 -10.54690 -10.38429 -10.28337 -9.74003 -9.28844 -8.06470 -6.20213 0.30688 0.47998 1.39450 1.40584 1.50195 2.43449 2.91960 3.01161 3.19625 3.54695 3.83064 3.92279 4.00344 4.03944 4.12610 4.13986 4.15859 4.29271 4.36007 4.46062 4.48421 4.55621 4.62643 4.66951 4.73633 4.77133 4.81212 4.82728 4.85319 4.92146 4.97985 5.02177 5.05426 5.09068 5.14862 5.16839 5.26131 5.28481 5.34152 5.37376 5.41892 5.46450 5.47407 5.48784 5.51193 5.62448 5.70275 5.92215 6.06106 6.10417 6.22089 6.43354 6.51202 6.92890 7.16288 7.47642 8.96768 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012882 B = 0.003707 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.054611 B = 7550.474565 C = 8957.407452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 C -0.150 4.150 4 C -0.094 4.094 5 C 0.139 3.861 6 H 0.052 0.948 7 N -0.670 5.670 8 C 0.105 3.895 9 C -0.130 4.130 10 C -0.096 4.096 11 C 0.047 3.953 12 C -0.535 4.535 13 H 0.049 0.951 14 C 0.013 3.987 15 N -0.916 5.916 16 Si 0.948 3.052 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.270 1.270 20 C -0.101 4.101 21 C -0.091 4.091 22 C 0.119 3.881 23 C -0.161 4.161 24 C -0.088 4.088 25 C -0.177 4.177 26 C 0.081 3.919 27 N -0.508 5.508 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.351 0.649 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.019 0.981 42 H 0.054 0.946 43 H -0.006 1.006 44 H 0.258 0.742 45 H 0.042 0.958 46 H 0.047 0.953 47 H 0.075 0.925 48 H 0.056 0.944 49 H 0.146 0.854 50 H 0.153 0.847 51 H 0.161 0.839 52 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.146 -5.775 16.730 21.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 C -0.207 4.207 4 C -0.133 4.133 5 C 0.028 3.972 6 H 0.070 0.930 7 N -0.302 5.302 8 C -0.004 4.004 9 C -0.169 4.169 10 C -0.135 4.135 11 C 0.028 3.972 12 C -0.573 4.573 13 H 0.067 0.933 14 C -0.186 4.186 15 N -0.555 5.555 16 Si 0.774 3.226 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.194 1.194 20 C -0.139 4.139 21 C -0.129 4.129 22 C -0.018 4.018 23 C -0.181 4.181 24 C -0.114 4.114 25 C -0.197 4.197 26 C -0.076 4.076 27 N -0.218 5.218 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.173 0.827 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.038 0.962 42 H 0.073 0.927 43 H 0.012 0.988 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.093 0.907 48 H 0.074 0.926 49 H 0.163 0.837 50 H 0.170 0.830 51 H 0.179 0.821 52 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -12.503 -5.396 17.009 21.788 hybrid contribution 1.528 0.721 -1.257 2.106 sum -10.975 -4.675 15.752 19.759 Atomic orbital electron populations 1.21770 0.93758 1.02187 1.02058 1.21147 0.96920 0.95881 0.97615 1.21916 1.00334 0.96476 1.01966 1.21637 0.91887 1.01087 0.98656 1.20151 0.96191 0.93461 0.87350 0.93014 1.60534 1.03926 1.53929 1.11835 1.21417 0.90006 0.93956 0.95048 1.22161 0.97955 0.98356 0.98460 1.21321 0.93751 1.00843 0.97599 1.18613 0.94061 0.91950 0.92549 1.21660 0.94616 1.17518 1.23514 0.93283 1.25704 0.99785 0.96270 0.96795 1.70021 1.30047 1.23521 1.31955 0.85710 0.80874 0.77241 0.78767 1.20140 1.21017 1.19442 1.21478 0.96346 0.98088 0.98028 1.21395 0.95423 0.96807 0.99287 1.21270 0.94506 0.92792 0.93277 1.22275 0.98200 0.97143 1.00447 1.21999 0.97328 0.99842 0.92241 1.22434 0.99831 0.97216 1.00183 1.23155 0.94287 0.94221 0.95945 1.67312 1.23027 1.32704 0.98785 0.92370 0.92331 0.92070 0.91578 0.94053 0.92523 0.92164 0.91209 0.90741 0.82687 0.92219 0.93022 0.93203 0.96237 0.92697 0.98755 0.93237 0.93887 0.93407 0.90690 0.92560 0.83671 0.82965 0.82144 0.80696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.19 71.98 0.66 -1.71 16 2 C -0.10 -1.97 2.83 -10.79 -0.03 -2.00 16 3 C -0.15 -3.35 8.97 71.98 0.65 -2.70 16 4 C -0.09 -2.07 4.16 30.59 0.13 -1.94 16 5 C 0.14 3.58 2.20 44.17 0.10 3.68 16 6 H 0.05 1.54 5.30 -2.39 -0.01 1.53 16 7 N -0.67 -17.30 4.84 -473.31 -2.29 -19.59 16 8 C 0.11 3.32 1.37 44.92 0.06 3.38 16 9 C -0.13 -4.83 5.16 30.60 0.16 -4.67 16 10 C -0.10 -4.57 4.98 30.60 0.15 -4.42 16 11 C 0.05 2.33 2.10 -11.54 -0.02 2.31 16 12 C -0.53 -29.87 8.56 25.60 0.22 -29.65 16 13 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 14 C 0.01 0.72 5.30 84.65 0.45 1.17 16 15 N -0.92 -53.41 11.32 21.45 0.24 -53.16 16 16 Si 0.95 44.20 29.54 68.60 2.03 46.22 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 C -0.10 -4.10 5.14 30.58 0.16 -3.94 16 21 C -0.09 -2.96 5.47 30.58 0.17 -2.79 16 22 C 0.12 3.18 6.06 42.55 0.26 3.44 16 23 C -0.16 -4.01 8.81 22.36 0.20 -3.81 16 24 C -0.09 -1.77 10.18 22.47 0.23 -1.54 16 25 C -0.18 -3.10 10.11 22.36 0.23 -2.88 16 26 C 0.08 1.65 11.18 84.67 0.95 2.60 16 27 N -0.51 -13.26 9.77 -183.89 -1.80 -15.05 16 28 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 1.42 6.33 -2.39 -0.02 1.40 16 32 H 0.04 1.07 5.08 -2.39 -0.01 1.06 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.72 7.78 -2.39 -0.02 1.70 16 37 H 0.35 8.65 6.19 -89.69 -0.56 8.09 16 38 H 0.06 2.04 7.39 -2.38 -0.02 2.03 16 39 H 0.05 1.93 8.13 -2.39 -0.02 1.92 16 40 H 0.05 1.75 6.02 -2.39 -0.01 1.74 16 41 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.05 2.99 6.07 -2.39 -0.01 2.98 16 43 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 44 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 45 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.07 2.10 7.26 -2.39 -0.02 2.09 16 48 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 49 H 0.15 3.72 5.37 -2.91 -0.02 3.70 16 50 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 51 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 52 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -62.39 389.27 3.21 -59.18 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.33 Total: 27.90 kcal Atomic # 6 Polarization: -50.19 SS G_CDS: 4.70 Total: -45.49 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -3.84 Total: -87.81 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -62.39 3.21 -59.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328983.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.507 kcal (2) G-P(sol) polarization free energy of solvation -62.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds