Wall clock time and date at job start Tue Mar 31 2020 11:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47055 * 2 1 4 4 C 1.53005 * 109.46506 * 119.99529 * 2 1 3 5 5 C 1.53010 * 109.46680 * 174.67249 * 4 2 1 6 6 H 1.08999 * 109.46987 * 56.43506 * 5 4 2 7 7 N 1.46898 * 109.46785 * 176.43698 * 5 4 2 8 8 C 1.46904 * 111.00164 * 274.20495 * 7 5 4 9 9 C 1.53004 * 109.47261 * 273.05793 * 8 7 5 10 10 C 1.52999 * 109.47293 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.46880 * 59.99961 * 10 9 8 12 12 C 1.50703 * 109.46947 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00579 * 120.00012 * 12 11 10 14 14 C 1.37882 * 119.99668 * 300.00112 * 12 11 10 15 15 N 1.31511 * 119.99760 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00064 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46719 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47235 * 119.99618 * 16 14 12 19 19 H 1.48495 * 109.46931 * 239.99909 * 16 14 12 20 20 C 1.53005 * 109.47334 * 299.99736 * 11 10 9 21 21 C 1.52999 * 109.47070 * 153.05657 * 8 7 5 22 22 C 1.50695 * 109.47086 * 296.43656 * 5 4 2 23 23 C 1.38231 * 119.61850 * 125.00242 * 22 5 4 24 24 C 1.38626 * 119.15890 * 179.97438 * 23 22 5 25 25 C 1.38664 * 118.42529 * 359.97438 * 24 23 22 26 26 C 1.38182 * 119.16107 * 0.02562 * 25 24 23 27 27 N 1.31858 * 119.61846 * 304.72617 * 22 5 4 28 28 H 1.08997 * 109.47588 * 300.00776 * 1 2 3 29 29 H 1.09007 * 109.47100 * 60.00373 * 1 2 3 30 30 H 1.08994 * 109.47395 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47588 * 239.99224 * 2 1 3 32 32 H 1.09007 * 109.46962 * 185.80049 * 3 2 1 33 33 H 1.08998 * 109.47351 * 305.80082 * 3 2 1 34 34 H 1.09003 * 109.47320 * 65.80355 * 3 2 1 35 35 H 1.08994 * 109.47131 * 54.67604 * 4 2 1 36 36 H 1.08994 * 109.47450 * 294.67168 * 4 2 1 37 37 H 1.00903 * 111.00510 * 38.15688 * 7 5 4 38 38 H 1.09002 * 109.46738 * 33.05534 * 8 7 5 39 39 H 1.09000 * 109.46778 * 300.00291 * 9 8 7 40 40 H 1.09003 * 109.46633 * 59.99343 * 9 8 7 41 41 H 1.09002 * 109.46896 * 299.99857 * 10 9 8 42 42 H 1.08997 * 109.47196 * 179.97438 * 10 9 8 43 43 H 1.08994 * 109.47290 * 59.99930 * 11 10 9 44 44 H 0.97004 * 119.99814 * 180.02562 * 15 14 12 45 45 H 1.09002 * 109.47260 * 300.00604 * 20 11 10 46 46 H 1.08994 * 109.47241 * 180.02562 * 20 11 10 47 47 H 1.08997 * 109.47118 * 300.00017 * 21 8 7 48 48 H 1.09000 * 109.47051 * 60.00669 * 21 8 7 49 49 H 1.08004 * 120.41666 * 359.97438 * 23 22 5 50 50 H 1.08005 * 120.78395 * 180.02562 * 24 23 22 51 51 H 1.08000 * 120.42051 * 180.02562 * 25 24 23 52 52 H 1.08005 * 119.61767 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0398 -0.7212 1.2494 5 6 3.5640 -0.8383 1.1843 6 1 4.0002 0.1543 1.0715 7 7 4.0611 -1.4539 2.4220 8 6 4.2644 -0.4427 3.4681 9 6 5.6665 0.1551 3.3340 10 6 5.8780 1.2086 4.4232 11 6 5.7312 0.5561 5.7992 12 6 5.9390 1.5939 6.8720 13 1 5.1502 1.8056 7.5786 14 6 7.1362 2.2732 6.9514 15 7 8.0969 2.0150 6.0912 16 14 7.3941 3.5591 8.2816 17 1 6.1700 3.6602 9.1161 18 1 8.5441 3.1653 9.1345 19 1 7.6728 4.8744 7.6511 20 6 4.3292 -0.0417 5.9333 21 6 4.1178 -1.0958 4.8439 22 6 3.9522 -1.6943 0.0064 23 6 4.8309 -1.1984 -0.9385 24 6 5.1819 -1.9942 -2.0179 25 6 4.6340 -3.2649 -2.1069 26 6 3.7621 -3.6926 -1.1239 27 7 3.4540 -2.9098 -0.1082 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1251 1.4443 -0.1039 33 1 1.5943 1.9855 -0.8335 34 1 1.7639 1.9255 0.9374 35 1 1.6007 -1.7176 1.2984 36 1 1.7565 -0.1552 2.1367 37 1 3.4387 -2.1820 2.7390 38 1 3.5209 0.3469 3.3595 39 1 6.4100 -0.6346 3.4425 40 1 5.7708 0.6202 2.3538 41 1 5.1344 1.9981 4.3142 42 1 6.8769 1.6341 4.3279 43 1 6.4747 -0.2335 5.9081 44 1 8.9394 2.4926 6.1473 45 1 3.5856 0.7479 5.8244 46 1 4.2245 -0.5061 6.9138 47 1 3.1191 -1.5216 4.9394 48 1 4.8615 -1.8853 4.9524 49 1 5.2388 -0.2035 -0.8369 50 1 5.8665 -1.6333 -2.7713 51 1 4.8856 -3.9122 -2.9340 52 1 3.3307 -4.6808 -1.1861 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328984.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:28 Heat of formation + Delta-G solvation = -3.726344 kcal Electronic energy + Delta-G solvation = -27364.162214 eV Core-core repulsion = 23940.632664 eV Total energy + Delta-G solvation = -3423.529550 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.44257 -38.38886 -36.87868 -34.50638 -32.71456 -32.32474 -31.21284 -29.69348 -29.00429 -27.33309 -27.02111 -24.61506 -23.91953 -23.37297 -21.81006 -21.18034 -20.31650 -19.77040 -18.67173 -17.03210 -16.28912 -16.19924 -15.76111 -15.37294 -15.01417 -14.67761 -14.46718 -14.22102 -13.76743 -13.59982 -13.48668 -13.20869 -12.98308 -12.75418 -12.61020 -12.31939 -12.26523 -12.05131 -11.80669 -11.57523 -11.47115 -11.16141 -11.07780 -10.92723 -10.72037 -10.67238 -10.58198 -10.39380 -10.33612 -10.10957 -9.89389 -9.79871 -9.42917 -9.28549 -9.02120 -8.84987 -8.58781 -8.24504 -8.02475 -5.92361 -3.98268 1.08896 1.26055 3.32112 3.40298 3.44140 3.74038 4.25710 4.39461 4.48541 4.66447 4.75387 4.81047 4.86258 4.98336 5.02815 5.12403 5.27246 5.36270 5.39354 5.49763 5.53661 5.56515 5.58601 5.61180 5.64982 5.72563 5.79813 5.85921 5.94662 5.97072 6.06102 6.10790 6.17117 6.21113 6.28569 6.31052 6.41371 6.46910 6.49606 6.67132 6.68330 6.76807 6.81937 7.00944 7.20962 7.31311 7.45936 7.62820 7.71036 7.82712 8.02226 8.10056 8.24061 8.54058 9.06337 9.66025 11.13034 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.003110 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.525775 B = 9000.503689 C = 9570.280638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.137 4.137 5 C 0.136 3.864 6 H 0.093 0.907 7 N -0.676 5.676 8 C 0.093 3.907 9 C -0.100 4.100 10 C -0.109 4.109 11 C 0.049 3.951 12 C -0.511 4.511 13 H 0.053 0.947 14 C 0.060 3.940 15 N -0.889 5.889 16 Si 0.887 3.113 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.105 4.105 21 C -0.116 4.116 22 C 0.162 3.838 23 C -0.164 4.164 24 C -0.076 4.076 25 C -0.185 4.185 26 C 0.098 3.902 27 N -0.472 5.472 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.342 0.658 38 H 0.039 0.961 39 H 0.057 0.943 40 H 0.036 0.964 41 H 0.029 0.971 42 H 0.091 0.909 43 H 0.025 0.975 44 H 0.258 0.742 45 H 0.045 0.955 46 H 0.047 0.953 47 H 0.042 0.958 48 H 0.063 0.937 49 H 0.131 0.869 50 H 0.131 0.869 51 H 0.129 0.871 52 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.026 -7.450 -17.665 22.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.208 4.208 4 C -0.177 4.177 5 C 0.025 3.975 6 H 0.111 0.889 7 N -0.306 5.306 8 C -0.016 4.016 9 C -0.139 4.139 10 C -0.147 4.147 11 C 0.030 3.970 12 C -0.550 4.550 13 H 0.071 0.929 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.715 3.285 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.143 4.143 21 C -0.154 4.154 22 C 0.023 3.977 23 C -0.185 4.185 24 C -0.102 4.102 25 C -0.205 4.205 26 C -0.059 4.059 27 N -0.182 5.182 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.161 0.839 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.110 0.890 43 H 0.043 0.957 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.061 0.939 48 H 0.082 0.918 49 H 0.149 0.851 50 H 0.148 0.852 51 H 0.147 0.853 52 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.751 -7.699 -17.238 21.726 hybrid contribution 0.000 1.170 0.149 1.179 sum -10.751 -6.530 -17.089 21.219 Atomic orbital electron populations 1.21820 0.95400 1.01504 1.01523 1.21033 0.95563 0.96201 0.98236 1.21914 1.01150 0.95876 1.01831 1.22347 0.95790 1.01446 0.98067 1.20550 0.93235 0.95696 0.87973 0.88927 1.60575 1.52566 1.13661 1.03823 1.21632 0.98061 0.92206 0.89689 1.21607 0.94735 0.99049 0.98461 1.21612 1.02978 0.95749 0.94366 1.18651 0.90423 0.95007 0.92881 1.21287 0.99327 1.20728 1.13620 0.92868 1.24966 0.96131 0.97058 0.95878 1.69895 1.04924 1.42112 1.35942 0.86620 0.78047 0.81675 0.82148 1.19891 1.21132 1.21143 1.21601 1.00615 0.96286 0.95826 1.21733 0.99785 0.99209 0.94666 1.21145 0.91558 0.90877 0.94107 1.21983 0.99289 1.01622 0.95588 1.21533 0.97561 0.93825 0.97241 1.22063 1.00019 0.97229 1.01178 1.22705 0.94651 0.98963 0.89623 1.67429 1.23967 1.04456 1.22298 0.92687 0.93008 0.92869 0.91726 0.92522 0.92928 0.92420 0.90736 0.91483 0.83937 0.94278 0.92410 0.94516 0.95170 0.89046 0.95680 0.93222 0.93622 0.93432 0.93932 0.91844 0.85058 0.85157 0.85281 0.83194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.19 37.16 0.34 -1.01 16 2 C -0.09 -0.95 2.80 -90.62 -0.25 -1.20 16 3 C -0.15 -1.52 8.81 37.16 0.33 -1.19 16 4 C -0.14 -1.60 4.03 -26.72 -0.11 -1.71 16 5 C 0.14 1.77 2.04 -68.86 -0.14 1.63 16 6 H 0.09 1.26 5.39 -51.93 -0.28 0.98 16 7 N -0.68 -10.08 6.05 -100.95 -0.61 -10.69 16 8 C 0.09 1.56 2.28 -67.71 -0.15 1.41 16 9 C -0.10 -1.97 5.43 -26.73 -0.15 -2.11 16 10 C -0.11 -2.54 4.98 -26.73 -0.13 -2.67 16 11 C 0.05 1.21 2.10 -91.77 -0.19 1.02 16 12 C -0.51 -14.08 8.56 -34.44 -0.29 -14.37 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 14 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 15 N -0.89 -25.50 11.32 55.43 0.63 -24.87 16 16 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 C -0.11 -2.18 5.14 -26.70 -0.14 -2.32 16 21 C -0.12 -2.03 5.18 -26.70 -0.14 -2.17 16 22 C 0.16 2.07 4.59 -82.59 -0.38 1.69 16 23 C -0.16 -1.90 9.71 -39.44 -0.38 -2.28 16 24 C -0.08 -0.74 10.17 -39.28 -0.40 -1.14 16 25 C -0.18 -1.71 10.11 -39.44 -0.40 -2.10 16 26 C 0.10 1.03 11.18 -17.55 -0.20 0.83 16 27 N -0.47 -6.04 9.82 -9.47 -0.09 -6.13 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.72 7.16 -51.93 -0.37 0.35 16 32 H 0.06 0.58 6.78 -51.92 -0.35 0.23 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.91 7.85 -51.93 -0.41 0.50 16 36 H 0.07 0.82 7.48 -51.93 -0.39 0.43 16 37 H 0.34 4.93 8.05 -39.29 -0.32 4.61 16 38 H 0.04 0.67 7.16 -51.93 -0.37 0.29 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.04 0.67 7.58 -51.93 -0.39 0.28 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 48 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.13 1.38 7.95 -52.48 -0.42 0.96 16 50 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 51 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 52 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 399.06 15.07 6.01 6.01 Total: -1.00 -29.01 399.06 -11.46 -40.47 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -9.50 Total: 4.97 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: -2.88 Total: -26.12 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -0.08 Total: -41.70 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.01 -11.46 -40.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328984.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.748 kcal (2) G-P(sol) polarization free energy of solvation -29.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds