Wall clock time and date at job start Tue Mar 31 2020 11:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47055 * 2 1 4 4 C 1.53005 * 109.46506 * 119.99529 * 2 1 3 5 5 C 1.53010 * 109.46680 * 174.67249 * 4 2 1 6 6 H 1.08999 * 109.46987 * 56.43506 * 5 4 2 7 7 N 1.46898 * 109.46785 * 176.43698 * 5 4 2 8 8 C 1.46904 * 111.00164 * 274.20495 * 7 5 4 9 9 C 1.53004 * 109.47261 * 273.05793 * 8 7 5 10 10 C 1.52999 * 109.47293 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.46880 * 59.99961 * 10 9 8 12 12 C 1.50703 * 109.46947 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00579 * 120.00012 * 12 11 10 14 14 C 1.37882 * 119.99668 * 300.00112 * 12 11 10 15 15 N 1.31511 * 119.99760 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00064 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46719 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47235 * 119.99618 * 16 14 12 19 19 H 1.48495 * 109.46931 * 239.99909 * 16 14 12 20 20 C 1.53005 * 109.47334 * 299.99736 * 11 10 9 21 21 C 1.52999 * 109.47070 * 153.05657 * 8 7 5 22 22 C 1.50695 * 109.47086 * 296.43656 * 5 4 2 23 23 C 1.38231 * 119.61850 * 125.00242 * 22 5 4 24 24 C 1.38626 * 119.15890 * 179.97438 * 23 22 5 25 25 C 1.38664 * 118.42529 * 359.97438 * 24 23 22 26 26 C 1.38182 * 119.16107 * 0.02562 * 25 24 23 27 27 N 1.31858 * 119.61846 * 304.72617 * 22 5 4 28 28 H 1.08997 * 109.47588 * 300.00776 * 1 2 3 29 29 H 1.09007 * 109.47100 * 60.00373 * 1 2 3 30 30 H 1.08994 * 109.47395 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47588 * 239.99224 * 2 1 3 32 32 H 1.09007 * 109.46962 * 185.80049 * 3 2 1 33 33 H 1.08998 * 109.47351 * 305.80082 * 3 2 1 34 34 H 1.09003 * 109.47320 * 65.80355 * 3 2 1 35 35 H 1.08994 * 109.47131 * 54.67604 * 4 2 1 36 36 H 1.08994 * 109.47450 * 294.67168 * 4 2 1 37 37 H 1.00903 * 111.00510 * 38.15688 * 7 5 4 38 38 H 1.09002 * 109.46738 * 33.05534 * 8 7 5 39 39 H 1.09000 * 109.46778 * 300.00291 * 9 8 7 40 40 H 1.09003 * 109.46633 * 59.99343 * 9 8 7 41 41 H 1.09002 * 109.46896 * 299.99857 * 10 9 8 42 42 H 1.08997 * 109.47196 * 179.97438 * 10 9 8 43 43 H 1.08994 * 109.47290 * 59.99930 * 11 10 9 44 44 H 0.97004 * 119.99814 * 180.02562 * 15 14 12 45 45 H 1.09002 * 109.47260 * 300.00604 * 20 11 10 46 46 H 1.08994 * 109.47241 * 180.02562 * 20 11 10 47 47 H 1.08997 * 109.47118 * 300.00017 * 21 8 7 48 48 H 1.09000 * 109.47051 * 60.00669 * 21 8 7 49 49 H 1.08004 * 120.41666 * 359.97438 * 23 22 5 50 50 H 1.08005 * 120.78395 * 180.02562 * 24 23 22 51 51 H 1.08000 * 120.42051 * 180.02562 * 25 24 23 52 52 H 1.08005 * 119.61767 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0398 -0.7212 1.2494 5 6 3.5640 -0.8383 1.1843 6 1 4.0002 0.1543 1.0715 7 7 4.0611 -1.4539 2.4220 8 6 4.2644 -0.4427 3.4681 9 6 5.6665 0.1551 3.3340 10 6 5.8780 1.2086 4.4232 11 6 5.7312 0.5561 5.7992 12 6 5.9390 1.5939 6.8720 13 1 5.1502 1.8056 7.5786 14 6 7.1362 2.2732 6.9514 15 7 8.0969 2.0150 6.0912 16 14 7.3941 3.5591 8.2816 17 1 6.1700 3.6602 9.1161 18 1 8.5441 3.1653 9.1345 19 1 7.6728 4.8744 7.6511 20 6 4.3292 -0.0417 5.9333 21 6 4.1178 -1.0958 4.8439 22 6 3.9522 -1.6943 0.0064 23 6 4.8309 -1.1984 -0.9385 24 6 5.1819 -1.9942 -2.0179 25 6 4.6340 -3.2649 -2.1069 26 6 3.7621 -3.6926 -1.1239 27 7 3.4540 -2.9098 -0.1082 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1251 1.4443 -0.1039 33 1 1.5943 1.9855 -0.8335 34 1 1.7639 1.9255 0.9374 35 1 1.6007 -1.7176 1.2984 36 1 1.7565 -0.1552 2.1367 37 1 3.4387 -2.1820 2.7390 38 1 3.5209 0.3469 3.3595 39 1 6.4100 -0.6346 3.4425 40 1 5.7708 0.6202 2.3538 41 1 5.1344 1.9981 4.3142 42 1 6.8769 1.6341 4.3279 43 1 6.4747 -0.2335 5.9081 44 1 8.9394 2.4926 6.1473 45 1 3.5856 0.7479 5.8244 46 1 4.2245 -0.5061 6.9138 47 1 3.1191 -1.5216 4.9394 48 1 4.8615 -1.8853 4.9524 49 1 5.2388 -0.2035 -0.8369 50 1 5.8665 -1.6333 -2.7713 51 1 4.8856 -3.9122 -2.9340 52 1 3.3307 -4.6808 -1.1861 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328984.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:27 Heat of formation + Delta-G solvation = -18.240696 kcal Electronic energy + Delta-G solvation = -27364.791604 eV Core-core repulsion = 23940.632664 eV Total energy + Delta-G solvation = -3424.158939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.31079 -39.75388 -38.04127 -35.84522 -34.31494 -33.22962 -32.41968 -31.38555 -30.33919 -28.42711 -28.03604 -26.15411 -25.11011 -24.22876 -23.35361 -22.40167 -21.73279 -20.68867 -20.38689 -18.38029 -17.91292 -17.05101 -16.80084 -16.51520 -16.23813 -16.08550 -15.58516 -15.48451 -14.90570 -14.74295 -14.65936 -14.49523 -14.37356 -14.01562 -13.88819 -13.50526 -13.21614 -13.14829 -13.03125 -12.94499 -12.79659 -12.64117 -12.55679 -12.30176 -12.25944 -12.03425 -11.84262 -11.77659 -11.65853 -11.55656 -11.45470 -11.15828 -10.73666 -10.69255 -10.49808 -10.35814 -10.25315 -9.83177 -9.22688 -8.04971 -6.19041 0.28002 0.47777 1.40030 1.41965 1.53137 2.44803 2.86479 3.20836 3.31463 3.45048 3.75209 3.90737 3.98883 4.04501 4.06035 4.12365 4.17238 4.29428 4.33288 4.39685 4.45096 4.58242 4.61160 4.69761 4.73228 4.77223 4.78676 4.85181 4.88035 4.90156 4.92600 4.98496 4.99538 5.02555 5.07545 5.12119 5.19349 5.27456 5.33886 5.36309 5.37858 5.43355 5.44847 5.47955 5.52180 5.64365 5.73486 5.90034 6.06971 6.17502 6.24633 6.44454 6.55815 6.94326 7.19357 7.48837 8.98939 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.003110 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.525775 B = 9000.503689 C = 9570.280638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.150 4.150 4 C -0.128 4.128 5 C 0.140 3.860 6 H 0.084 0.916 7 N -0.679 5.679 8 C 0.107 3.893 9 C -0.089 4.089 10 C -0.098 4.098 11 C 0.045 3.955 12 C -0.533 4.533 13 H 0.050 0.950 14 C 0.011 3.989 15 N -0.916 5.916 16 Si 0.951 3.049 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.280 1.280 20 C -0.098 4.098 21 C -0.108 4.108 22 C 0.142 3.858 23 C -0.181 4.181 24 C -0.079 4.079 25 C -0.178 4.178 26 C 0.084 3.916 27 N -0.494 5.494 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.347 0.653 38 H 0.044 0.956 39 H 0.038 0.962 40 H 0.047 0.953 41 H 0.027 0.973 42 H 0.056 0.944 43 H -0.011 1.011 44 H 0.259 0.741 45 H 0.049 0.951 46 H 0.046 0.954 47 H 0.073 0.927 48 H 0.054 0.946 49 H 0.134 0.866 50 H 0.156 0.844 51 H 0.161 0.839 52 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.325 -7.921 -19.021 24.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C -0.207 4.207 4 C -0.167 4.167 5 C 0.029 3.971 6 H 0.102 0.898 7 N -0.310 5.310 8 C -0.002 4.002 9 C -0.127 4.127 10 C -0.137 4.137 11 C 0.027 3.973 12 C -0.571 4.571 13 H 0.069 0.931 14 C -0.187 4.187 15 N -0.556 5.556 16 Si 0.777 3.223 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.206 1.206 20 C -0.136 4.136 21 C -0.146 4.146 22 C 0.004 3.996 23 C -0.201 4.201 24 C -0.105 4.105 25 C -0.198 4.198 26 C -0.073 4.073 27 N -0.204 5.204 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.167 0.833 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.007 0.993 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.092 0.908 48 H 0.072 0.928 49 H 0.151 0.849 50 H 0.173 0.827 51 H 0.178 0.822 52 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -12.065 -8.178 -18.598 23.629 hybrid contribution 0.450 1.262 0.505 1.432 sum -11.615 -6.916 -18.093 22.586 Atomic orbital electron populations 1.21795 0.94428 1.01706 1.02049 1.20961 0.96289 0.95983 0.97199 1.21905 1.00911 0.95824 1.02038 1.22231 0.94773 1.01229 0.98475 1.20517 0.93996 0.95311 0.87268 0.89767 1.60446 1.53424 1.13266 1.03828 1.21332 0.96043 0.92724 0.90136 1.21424 0.96298 0.97487 0.97520 1.21383 1.00724 0.96505 0.95100 1.18623 0.91976 0.93659 0.93044 1.21667 0.99509 1.21547 1.14396 0.93137 1.25742 0.95946 0.99060 0.97974 1.70043 1.05243 1.43025 1.37319 0.85616 0.78051 0.79136 0.79519 1.19169 1.20803 1.20608 1.21460 0.97881 0.97121 0.97157 1.21636 1.01260 0.97911 0.93776 1.21056 0.92750 0.91295 0.94454 1.22146 0.99479 1.02229 0.96292 1.21893 0.97588 0.93896 0.97081 1.22427 0.98674 0.97253 1.01412 1.23200 0.94975 0.99681 0.89404 1.67385 1.24729 1.04692 1.23584 0.92632 0.92015 0.92834 0.92386 0.93046 0.91773 0.92920 0.91168 0.92018 0.83342 0.93851 0.94276 0.93409 0.95444 0.92566 0.99282 0.93214 0.93244 0.93500 0.90822 0.92756 0.84851 0.82661 0.82166 0.80941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.19 71.98 0.66 -1.77 16 2 C -0.09 -1.67 2.80 -10.79 -0.03 -1.70 16 3 C -0.15 -2.87 8.81 71.98 0.63 -2.24 16 4 C -0.13 -2.86 4.03 30.60 0.12 -2.73 16 5 C 0.14 3.55 2.04 44.17 0.09 3.64 16 6 H 0.08 2.26 5.39 -2.39 -0.01 2.25 16 7 N -0.68 -19.78 6.05 -473.29 -2.86 -22.64 16 8 C 0.11 3.55 2.28 44.92 0.10 3.65 16 9 C -0.09 -3.55 5.43 30.60 0.17 -3.39 16 10 C -0.10 -4.76 4.98 30.59 0.15 -4.60 16 11 C 0.05 2.32 2.10 -11.54 -0.02 2.30 16 12 C -0.53 -29.99 8.56 25.60 0.22 -29.77 16 13 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 14 C 0.01 0.62 5.30 84.66 0.45 1.07 16 15 N -0.92 -54.07 11.32 21.45 0.24 -53.83 16 16 Si 0.95 44.35 29.54 68.60 2.03 46.38 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 C -0.10 -4.06 5.14 30.61 0.16 -3.91 16 21 C -0.11 -3.70 5.18 30.61 0.16 -3.54 16 22 C 0.14 3.53 4.59 42.55 0.20 3.72 16 23 C -0.18 -4.01 9.71 22.36 0.22 -3.79 16 24 C -0.08 -1.37 10.17 22.46 0.23 -1.14 16 25 C -0.18 -2.79 10.11 22.36 0.23 -2.57 16 26 C 0.08 1.60 11.18 84.67 0.95 2.55 16 27 N -0.49 -12.04 9.82 -183.88 -1.81 -13.85 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.06 1.24 7.16 -2.39 -0.02 1.22 16 32 H 0.05 1.03 6.78 -2.38 -0.02 1.01 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.63 7.85 -2.39 -0.02 1.62 16 36 H 0.06 1.43 7.48 -2.39 -0.02 1.42 16 37 H 0.35 9.59 8.05 -89.69 -0.72 8.87 16 38 H 0.04 1.43 7.16 -2.39 -0.02 1.41 16 39 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.05 1.78 7.58 -2.39 -0.02 1.76 16 41 H 0.03 1.29 8.14 -2.39 -0.02 1.28 16 42 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 43 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 44 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 45 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.07 2.10 8.12 -2.39 -0.02 2.08 16 48 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.13 2.75 7.95 -2.91 -0.02 2.73 16 50 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 51 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 52 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -63.87 399.06 2.42 -61.45 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.15 Total: 26.70 kcal Atomic # 6 Polarization: -48.89 SS G_CDS: 4.67 Total: -44.22 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -4.43 Total: -90.31 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -63.87 2.42 -61.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328984.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.212 kcal (2) G-P(sol) polarization free energy of solvation -63.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds