Wall clock time and date at job start Tue Mar 31 2020 11:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47104 * 2 1 4 4 N 1.46905 * 109.46871 * 240.00781 * 2 1 3 5 5 C 1.46902 * 110.99913 * 84.99862 * 4 2 1 6 6 C 1.53008 * 109.46898 * 205.00113 * 5 4 2 7 7 C 1.52998 * 109.47153 * 300.00005 * 6 5 4 8 8 C 1.53006 * 109.47078 * 300.00050 * 7 6 5 9 9 C 1.50696 * 109.46848 * 179.97438 * 8 7 6 10 10 H 1.07991 * 120.00660 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99727 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00085 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00278 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47292 * 89.99443 * 13 11 9 15 15 H 1.48495 * 109.47481 * 209.99955 * 13 11 9 16 16 H 1.48505 * 109.46855 * 329.99708 * 13 11 9 17 17 C 1.52999 * 109.46783 * 59.99881 * 8 7 6 18 18 C 1.52993 * 109.47377 * 85.00287 * 5 4 2 19 19 C 1.50694 * 109.47520 * 120.00702 * 2 1 3 20 20 C 1.38306 * 119.96252 * 79.99862 * 19 2 1 21 21 C 1.38266 * 120.15426 * 179.97438 * 20 19 2 22 22 C 1.38129 * 120.06970 * 0.02562 * 21 20 19 23 23 C 1.38891 * 119.92495 * 359.97438 * 22 21 20 24 24 N 1.39680 * 120.07378 * 180.02562 * 23 22 21 25 25 C 1.46505 * 119.99959 * 354.28190 * 24 23 22 26 26 C 1.46495 * 120.00031 * 174.28790 * 24 23 22 27 27 C 1.38082 * 119.96450 * 259.72454 * 19 2 1 28 28 H 1.09000 * 109.47104 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46393 * 299.98982 * 1 2 3 30 30 H 1.08989 * 109.47419 * 59.98821 * 1 2 3 31 31 H 1.00897 * 110.99818 * 321.04294 * 4 2 1 32 32 H 1.09001 * 109.47107 * 324.99562 * 5 4 2 33 33 H 1.08997 * 109.46801 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.46827 * 60.00018 * 6 5 4 35 35 H 1.09007 * 109.47203 * 59.99670 * 7 6 5 36 36 H 1.08993 * 109.47058 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.47054 * 300.00365 * 8 7 6 38 38 H 0.97004 * 120.00089 * 179.97438 * 12 11 9 39 39 H 1.09006 * 109.47131 * 179.97438 * 17 8 7 40 40 H 1.09007 * 109.47465 * 60.00401 * 17 8 7 41 41 H 1.08997 * 109.47678 * 179.97438 * 18 5 4 42 42 H 1.09006 * 109.47071 * 300.00018 * 18 5 4 43 43 H 1.08005 * 119.93065 * 0.02562 * 20 19 2 44 44 H 1.07995 * 119.96804 * 180.02562 * 21 20 19 45 45 H 1.08004 * 120.03651 * 180.02562 * 22 21 20 46 46 H 1.09001 * 109.46900 * 5.05461 * 25 24 23 47 47 H 1.08991 * 109.47254 * 125.05847 * 25 24 23 48 48 H 1.09003 * 109.47200 * 245.05931 * 25 24 23 49 49 H 1.09002 * 109.47793 * 89.99466 * 26 24 23 50 50 H 1.09001 * 109.46872 * 209.99936 * 26 24 23 51 51 H 1.08999 * 109.46830 * 329.99313 * 26 24 23 52 52 H 1.08003 * 120.03477 * 359.97438 * 27 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1996 5 6 2.0823 0.2229 -2.3469 6 6 1.9768 -0.5793 -3.6456 7 6 3.1346 -1.5764 -3.7247 8 6 4.4633 -0.8181 -3.7001 9 6 5.6036 -1.8002 -3.7774 10 1 5.4010 -2.8592 -3.8383 11 6 6.9056 -1.3467 -3.7713 12 7 7.1524 -0.0569 -3.6976 13 14 8.3192 -2.5639 -3.8678 14 1 8.6709 -2.8024 -5.2907 15 1 9.4976 -2.0119 -3.1524 16 1 7.9128 -3.8454 -3.2369 17 6 4.5687 -0.0159 -2.4015 18 6 3.4109 0.9811 -2.3225 19 6 2.0324 -0.7105 1.2303 20 6 2.0665 -2.0927 1.2642 21 6 2.5272 -2.7487 2.3908 22 6 2.9546 -2.0249 3.4868 23 6 2.9217 -0.6367 3.4562 24 7 3.3537 0.0983 4.5626 25 6 3.7236 -0.5914 5.8011 26 6 3.4368 1.5588 4.4846 27 6 2.4635 0.0192 2.3204 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8902 30 1 -0.3634 0.5140 -0.8898 31 1 1.4495 -1.4977 -1.4102 32 1 1.2574 0.9332 -2.2906 33 1 2.0229 0.0999 -4.4968 34 1 1.0302 -1.1195 -3.6630 35 1 3.0881 -2.2555 -2.8732 36 1 3.0591 -2.1481 -4.6495 37 1 4.5098 -0.1389 -4.5514 38 1 8.0684 0.2622 -3.6930 39 1 5.5155 0.5240 -2.3838 40 1 4.5222 -0.6950 -1.5501 41 1 3.4577 1.6599 -3.1740 42 1 3.4862 1.5526 -1.3973 43 1 1.7333 -2.6612 0.4084 44 1 2.5529 -3.8281 2.4138 45 1 3.3148 -2.5379 4.3664 46 1 3.6844 -1.6691 5.6424 47 1 4.7343 -0.3031 6.0896 48 1 3.0270 -0.3152 6.5927 49 1 2.4871 1.9940 4.7956 50 1 4.2313 1.9130 5.1415 51 1 3.6541 1.8560 3.4587 52 1 2.4412 1.0986 2.2914 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173332015.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:19 Heat of formation + Delta-G solvation = 22.937113 kcal Electronic energy + Delta-G solvation = -27443.663368 eV Core-core repulsion = 24021.290032 eV Total energy + Delta-G solvation = -3422.373336 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.74449 -38.37924 -36.52699 -34.82439 -32.68877 -30.95448 -29.99220 -29.56960 -29.19150 -28.01427 -27.46399 -24.80092 -24.39795 -23.03990 -21.67613 -21.25465 -20.43269 -19.60939 -18.03266 -17.33462 -16.16622 -15.78457 -15.39749 -15.17306 -15.11508 -14.68874 -14.52397 -14.24765 -13.77592 -13.44629 -13.39409 -13.06693 -12.76638 -12.71435 -12.61538 -12.40951 -12.21113 -12.08060 -11.96134 -11.77667 -11.37703 -11.33145 -11.15050 -11.03283 -10.89722 -10.69494 -10.52761 -10.37018 -10.13351 -9.94727 -9.67302 -9.61462 -9.13335 -8.74771 -8.52491 -8.41893 -8.09342 -7.80352 -7.17595 -5.81027 -3.85670 1.65127 1.86288 3.11326 3.39922 3.46359 3.50450 4.06606 4.53169 4.58053 4.81585 4.92415 5.06336 5.13894 5.17654 5.27128 5.31446 5.37759 5.45477 5.48437 5.54381 5.57693 5.59511 5.60368 5.67494 5.74387 5.79321 5.81300 5.90292 6.00608 6.12393 6.22959 6.28000 6.42545 6.44432 6.52335 6.59497 6.67077 6.78866 6.88095 6.93282 7.00151 7.07167 7.14999 7.26648 7.39578 7.55488 7.60334 7.67381 7.80018 7.87356 7.96434 8.31145 8.40886 8.69686 9.18464 9.77459 11.24190 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011231 B = 0.003915 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.530380 B = 7150.118476 C = 8403.649734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.121 3.879 3 H 0.083 0.917 4 N -0.660 5.660 5 C 0.095 3.905 6 C -0.118 4.118 7 C -0.102 4.102 8 C 0.053 3.947 9 C -0.505 4.505 10 H 0.051 0.949 11 C 0.060 3.940 12 N -0.891 5.891 13 Si 0.885 3.115 14 H -0.283 1.283 15 H -0.288 1.288 16 H -0.275 1.275 17 C -0.096 4.096 18 C -0.105 4.105 19 C -0.011 4.011 20 C -0.148 4.148 21 C -0.075 4.075 22 C -0.206 4.206 23 C 0.209 3.791 24 N -0.643 5.643 25 C 0.092 3.908 26 C 0.096 3.904 27 C -0.190 4.190 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.336 0.664 32 H 0.025 0.975 33 H 0.059 0.941 34 H 0.041 0.959 35 H 0.057 0.943 36 H 0.037 0.963 37 H 0.016 0.984 38 H 0.256 0.744 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.047 0.953 42 H 0.036 0.964 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.117 0.883 46 H 0.077 0.923 47 H 0.052 0.948 48 H 0.047 0.953 49 H 0.043 0.957 50 H 0.062 0.938 51 H 0.069 0.931 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.935 1.609 15.679 20.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.011 3.989 3 H 0.101 0.899 4 N -0.291 5.291 5 C -0.014 4.014 6 C -0.155 4.155 7 C -0.139 4.139 8 C 0.035 3.965 9 C -0.543 4.543 10 H 0.069 0.931 11 C -0.140 4.140 12 N -0.531 5.531 13 Si 0.713 3.287 14 H -0.210 1.210 15 H -0.214 1.214 16 H -0.200 1.200 17 C -0.134 4.134 18 C -0.143 4.143 19 C -0.013 4.013 20 C -0.168 4.168 21 C -0.094 4.094 22 C -0.228 4.228 23 C 0.109 3.891 24 N -0.356 5.356 25 C -0.051 4.051 26 C -0.047 4.047 27 C -0.213 4.213 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.155 0.845 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.034 0.966 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.096 0.904 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.062 0.938 50 H 0.081 0.919 51 H 0.088 0.912 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.053 1.922 15.979 20.107 hybrid contribution 0.017 -0.439 -0.180 0.475 sum -12.036 1.483 15.799 19.916 Atomic orbital electron populations 1.22477 0.96922 1.02145 1.01815 1.20466 0.91880 0.97557 0.89019 0.89919 1.60534 1.56561 1.09044 1.02927 1.21507 0.97061 0.93215 0.89591 1.21738 0.98574 0.98859 0.96375 1.21532 0.95558 0.97140 0.99684 1.18588 0.90071 0.93900 0.93976 1.21242 0.90907 0.93053 1.49113 0.93085 1.24936 0.98617 0.94885 0.95540 1.69902 1.19324 1.12466 1.51426 0.86716 0.82405 0.81750 0.77821 1.20973 1.21448 1.20033 1.21408 0.96163 0.96801 0.99034 1.21611 0.95707 0.98080 0.98894 1.19490 0.94986 0.93582 0.93193 1.20665 1.04367 0.93803 0.97993 1.20840 0.96640 0.99174 0.92746 1.20606 1.09799 0.91911 1.00480 1.17720 0.93530 0.90839 0.87001 1.46205 1.73028 1.05100 1.11306 1.21633 0.99273 0.98431 0.85742 1.21557 1.00610 0.79857 1.02678 1.20435 1.07964 0.99212 0.93682 0.92344 0.92365 0.92555 0.84533 0.95693 0.92271 0.94061 0.92474 0.94412 0.96626 0.93391 0.90254 0.93209 0.93402 0.94489 0.86463 0.86535 0.86522 0.90437 0.92950 0.93464 0.93824 0.91888 0.91207 0.86577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 9.12 37.16 0.34 -1.63 16 2 C 0.12 1.66 2.60 -68.87 -0.18 1.48 16 3 H 0.08 1.20 6.97 -51.93 -0.36 0.83 16 4 N -0.66 -10.28 4.03 -100.95 -0.41 -10.69 16 5 C 0.10 1.59 2.63 -67.71 -0.18 1.41 16 6 C -0.12 -2.02 5.30 -26.73 -0.14 -2.17 16 7 C -0.10 -2.13 4.98 -26.73 -0.13 -2.26 16 8 C 0.05 1.34 2.10 -91.77 -0.19 1.15 16 9 C -0.50 -14.30 8.56 -34.44 -0.29 -14.59 16 10 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 11 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 12 N -0.89 -26.28 11.32 55.43 0.63 -25.65 16 13 Si 0.88 22.06 29.54 -169.99 -5.02 17.04 16 14 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 C -0.10 -2.33 4.82 -26.73 -0.13 -2.46 16 18 C -0.10 -2.08 5.52 -26.74 -0.15 -2.22 16 19 C -0.01 -0.16 4.95 -104.66 -0.52 -0.68 16 20 C -0.15 -2.12 9.32 -39.55 -0.37 -2.48 16 21 C -0.08 -1.00 10.04 -39.61 -0.40 -1.40 16 22 C -0.21 -2.68 9.31 -39.38 -0.37 -3.05 16 23 C 0.21 2.82 6.54 -83.78 -0.55 2.27 16 24 N -0.64 -7.30 3.41 -187.55 -0.64 -7.94 16 25 C 0.09 0.80 10.63 59.85 0.64 1.44 16 26 C 0.10 0.90 10.11 59.84 0.60 1.51 16 27 C -0.19 -2.66 8.78 -39.38 -0.35 -3.01 16 28 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.62 7.42 -51.94 -0.39 0.23 16 31 H 0.34 4.87 7.27 -39.29 -0.29 4.59 16 32 H 0.03 0.38 7.11 -51.93 -0.37 0.01 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 35 H 0.06 1.21 7.48 -51.93 -0.39 0.82 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 39 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 40 H 0.05 1.27 7.60 -51.93 -0.39 0.87 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.04 0.70 7.43 -51.93 -0.39 0.31 16 43 H 0.12 1.61 7.24 -52.48 -0.38 1.23 16 44 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 45 H 0.12 1.28 5.74 -52.48 -0.30 0.98 16 46 H 0.08 0.64 5.31 -51.93 -0.28 0.36 16 47 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.06 0.49 8.07 -51.93 -0.42 0.07 16 51 H 0.07 0.70 6.44 -51.93 -0.33 0.36 16 52 H 0.12 1.49 6.28 -52.48 -0.33 1.16 16 LS Contribution 392.17 15.07 5.91 5.91 Total: -1.00 -30.55 392.17 -11.10 -41.65 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -9.12 Total: 4.75 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: -2.46 Total: -25.07 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: -0.42 Total: -44.28 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.55 -11.10 -41.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332015.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.586 kcal (2) G-P(sol) polarization free energy of solvation -30.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds