Wall clock time and date at job start Tue Mar 31 2020 11:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47104 * 2 1 4 4 N 1.46905 * 109.46871 * 240.00781 * 2 1 3 5 5 C 1.46902 * 110.99913 * 84.99862 * 4 2 1 6 6 C 1.53008 * 109.46898 * 205.00113 * 5 4 2 7 7 C 1.52998 * 109.47153 * 300.00005 * 6 5 4 8 8 C 1.53006 * 109.47078 * 300.00050 * 7 6 5 9 9 C 1.50696 * 109.46848 * 179.97438 * 8 7 6 10 10 H 1.07991 * 120.00660 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99727 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00085 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00278 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47292 * 89.99443 * 13 11 9 15 15 H 1.48495 * 109.47481 * 209.99955 * 13 11 9 16 16 H 1.48505 * 109.46855 * 329.99708 * 13 11 9 17 17 C 1.52999 * 109.46783 * 59.99881 * 8 7 6 18 18 C 1.52993 * 109.47377 * 85.00287 * 5 4 2 19 19 C 1.50694 * 109.47520 * 120.00702 * 2 1 3 20 20 C 1.38306 * 119.96252 * 79.99862 * 19 2 1 21 21 C 1.38266 * 120.15426 * 179.97438 * 20 19 2 22 22 C 1.38129 * 120.06970 * 0.02562 * 21 20 19 23 23 C 1.38891 * 119.92495 * 359.97438 * 22 21 20 24 24 N 1.39680 * 120.07378 * 180.02562 * 23 22 21 25 25 C 1.46505 * 119.99959 * 354.28190 * 24 23 22 26 26 C 1.46495 * 120.00031 * 174.28790 * 24 23 22 27 27 C 1.38082 * 119.96450 * 259.72454 * 19 2 1 28 28 H 1.09000 * 109.47104 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46393 * 299.98982 * 1 2 3 30 30 H 1.08989 * 109.47419 * 59.98821 * 1 2 3 31 31 H 1.00897 * 110.99818 * 321.04294 * 4 2 1 32 32 H 1.09001 * 109.47107 * 324.99562 * 5 4 2 33 33 H 1.08997 * 109.46801 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.46827 * 60.00018 * 6 5 4 35 35 H 1.09007 * 109.47203 * 59.99670 * 7 6 5 36 36 H 1.08993 * 109.47058 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.47054 * 300.00365 * 8 7 6 38 38 H 0.97004 * 120.00089 * 179.97438 * 12 11 9 39 39 H 1.09006 * 109.47131 * 179.97438 * 17 8 7 40 40 H 1.09007 * 109.47465 * 60.00401 * 17 8 7 41 41 H 1.08997 * 109.47678 * 179.97438 * 18 5 4 42 42 H 1.09006 * 109.47071 * 300.00018 * 18 5 4 43 43 H 1.08005 * 119.93065 * 0.02562 * 20 19 2 44 44 H 1.07995 * 119.96804 * 180.02562 * 21 20 19 45 45 H 1.08004 * 120.03651 * 180.02562 * 22 21 20 46 46 H 1.09001 * 109.46900 * 5.05461 * 25 24 23 47 47 H 1.08991 * 109.47254 * 125.05847 * 25 24 23 48 48 H 1.09003 * 109.47200 * 245.05931 * 25 24 23 49 49 H 1.09002 * 109.47793 * 89.99466 * 26 24 23 50 50 H 1.09001 * 109.46872 * 209.99936 * 26 24 23 51 51 H 1.08999 * 109.46830 * 329.99313 * 26 24 23 52 52 H 1.08003 * 120.03477 * 359.97438 * 27 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1996 5 6 2.0823 0.2229 -2.3469 6 6 1.9768 -0.5793 -3.6456 7 6 3.1346 -1.5764 -3.7247 8 6 4.4633 -0.8181 -3.7001 9 6 5.6036 -1.8002 -3.7774 10 1 5.4010 -2.8592 -3.8383 11 6 6.9056 -1.3467 -3.7713 12 7 7.1524 -0.0569 -3.6976 13 14 8.3192 -2.5639 -3.8678 14 1 8.6709 -2.8024 -5.2907 15 1 9.4976 -2.0119 -3.1524 16 1 7.9128 -3.8454 -3.2369 17 6 4.5687 -0.0159 -2.4015 18 6 3.4109 0.9811 -2.3225 19 6 2.0324 -0.7105 1.2303 20 6 2.0665 -2.0927 1.2642 21 6 2.5272 -2.7487 2.3908 22 6 2.9546 -2.0249 3.4868 23 6 2.9217 -0.6367 3.4562 24 7 3.3537 0.0983 4.5626 25 6 3.7236 -0.5914 5.8011 26 6 3.4368 1.5588 4.4846 27 6 2.4635 0.0192 2.3204 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8902 30 1 -0.3634 0.5140 -0.8898 31 1 1.4495 -1.4977 -1.4102 32 1 1.2574 0.9332 -2.2906 33 1 2.0229 0.0999 -4.4968 34 1 1.0302 -1.1195 -3.6630 35 1 3.0881 -2.2555 -2.8732 36 1 3.0591 -2.1481 -4.6495 37 1 4.5098 -0.1389 -4.5514 38 1 8.0684 0.2622 -3.6930 39 1 5.5155 0.5240 -2.3838 40 1 4.5222 -0.6950 -1.5501 41 1 3.4577 1.6599 -3.1740 42 1 3.4862 1.5526 -1.3973 43 1 1.7333 -2.6612 0.4084 44 1 2.5529 -3.8281 2.4138 45 1 3.3148 -2.5379 4.3664 46 1 3.6844 -1.6691 5.6424 47 1 4.7343 -0.3031 6.0896 48 1 3.0270 -0.3152 6.5927 49 1 2.4871 1.9940 4.7956 50 1 4.2313 1.9130 5.1415 51 1 3.6541 1.8560 3.4587 52 1 2.4412 1.0986 2.2914 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173332015.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:18 Heat of formation + Delta-G solvation = 7.942701 kcal Electronic energy + Delta-G solvation = -27444.313574 eV Core-core repulsion = 24021.290032 eV Total energy + Delta-G solvation = -3423.023542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.77598 -39.75607 -37.63445 -36.11163 -34.51400 -32.31230 -31.32880 -31.09439 -30.25977 -29.01644 -28.63751 -26.37459 -25.65554 -24.12623 -23.15026 -22.42960 -22.15140 -20.65445 -19.63211 -18.32678 -18.29222 -16.80220 -16.63553 -16.39103 -16.21000 -15.96995 -15.87713 -15.51666 -15.00028 -14.65799 -14.49446 -14.39307 -14.18249 -13.95516 -13.84098 -13.44198 -13.34890 -13.21968 -13.15858 -12.91748 -12.87386 -12.72345 -12.65238 -12.46212 -12.38884 -12.12550 -12.01363 -11.81973 -11.77155 -11.53767 -11.40327 -11.08155 -10.64062 -10.58772 -10.34134 -10.22740 -9.56602 -9.01405 -8.09282 -8.00091 -6.12958 0.62788 0.83949 1.40121 1.41271 1.51300 2.31018 2.47024 3.03201 3.25431 3.39961 3.87311 4.04897 4.10160 4.15780 4.22741 4.28103 4.34548 4.38756 4.41815 4.52211 4.54694 4.66692 4.72845 4.73910 4.78031 4.78823 4.87402 4.89009 4.91425 4.96258 4.98047 4.99956 5.03212 5.12436 5.20903 5.22486 5.25215 5.31287 5.39015 5.46791 5.56678 5.68600 5.74652 5.77237 5.88904 5.90913 6.08579 6.22926 6.33440 6.39528 6.43897 6.55627 6.65281 6.72909 7.01515 7.53714 9.02976 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011231 B = 0.003915 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.530380 B = 7150.118476 C = 8403.649734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.125 3.875 3 H 0.073 0.927 4 N -0.674 5.674 5 C 0.106 3.894 6 C -0.110 4.110 7 C -0.092 4.092 8 C 0.050 3.950 9 C -0.528 4.528 10 H 0.046 0.954 11 C 0.011 3.989 12 N -0.918 5.918 13 Si 0.946 3.054 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.270 1.270 17 C -0.080 4.080 18 C -0.099 4.099 19 C -0.022 4.022 20 C -0.168 4.168 21 C -0.082 4.082 22 C -0.216 4.216 23 C 0.200 3.800 24 N -0.650 5.650 25 C 0.087 3.913 26 C 0.092 3.908 27 C -0.208 4.208 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.344 0.656 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.034 0.966 37 H -0.018 1.018 38 H 0.256 0.744 39 H 0.037 0.963 40 H 0.032 0.968 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.118 0.882 44 H 0.134 0.866 45 H 0.135 0.865 46 H 0.079 0.921 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.054 0.946 50 H 0.080 0.920 51 H 0.058 0.942 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.310 1.090 16.826 22.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.015 3.985 3 H 0.091 0.909 4 N -0.306 5.306 5 C -0.004 4.004 6 C -0.148 4.148 7 C -0.130 4.130 8 C 0.032 3.968 9 C -0.566 4.566 10 H 0.065 0.935 11 C -0.187 4.187 12 N -0.558 5.558 13 Si 0.772 3.228 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.195 1.195 17 C -0.118 4.118 18 C -0.137 4.137 19 C -0.023 4.023 20 C -0.188 4.188 21 C -0.101 4.101 22 C -0.238 4.238 23 C 0.099 3.901 24 N -0.362 5.362 25 C -0.055 4.055 26 C -0.050 4.050 27 C -0.231 4.231 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.164 0.836 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.000 1.000 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.136 0.864 44 H 0.152 0.848 45 H 0.153 0.847 46 H 0.098 0.902 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.073 0.927 50 H 0.098 0.902 51 H 0.076 0.924 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.437 1.403 17.143 21.827 hybrid contribution 0.508 -0.261 -0.474 0.743 sum -12.928 1.142 16.669 21.126 Atomic orbital electron populations 1.22363 0.94711 1.02722 1.02517 1.20431 0.93541 0.96570 0.87947 0.90892 1.60392 1.57745 1.09428 1.03076 1.21322 0.95668 0.93558 0.89819 1.21674 0.98349 0.98153 0.96646 1.21355 0.94737 0.97523 0.99400 1.18564 0.91925 0.93336 0.92966 1.21661 0.92373 0.93428 1.49129 0.93544 1.25701 1.01159 0.96546 0.95308 1.70057 1.19697 1.14064 1.51991 0.85741 0.79262 0.79660 0.78116 1.20097 1.21154 1.19462 1.21093 0.96202 0.96821 0.97703 1.21508 0.96015 0.97252 0.98966 1.19638 0.95270 0.93842 0.93577 1.20794 1.05446 0.93975 0.98566 1.21120 0.96153 1.00229 0.92593 1.20877 1.09781 0.92003 1.01155 1.17942 0.93227 0.91381 0.87565 1.46488 1.72409 1.05867 1.11472 1.21801 1.00233 0.98461 0.85026 1.21664 1.01839 0.79058 1.02477 1.20596 1.08735 0.99616 0.94168 0.91818 0.91687 0.91750 0.83574 0.92847 0.92358 0.90488 0.92686 0.94708 0.99950 0.93481 0.94404 0.94927 0.93927 0.93884 0.86357 0.84840 0.84700 0.90229 0.91962 0.91937 0.92748 0.90163 0.92359 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 9.12 71.98 0.66 -2.65 16 2 C 0.13 3.26 2.60 44.17 0.11 3.38 16 3 H 0.07 2.03 6.97 -2.39 -0.02 2.02 16 4 N -0.67 -20.05 4.03 -473.30 -1.91 -21.96 16 5 C 0.11 3.32 2.63 44.92 0.12 3.44 16 6 C -0.11 -3.57 5.30 30.60 0.16 -3.41 16 7 C -0.09 -3.84 4.98 30.60 0.15 -3.69 16 8 C 0.05 2.63 2.10 -11.54 -0.02 2.60 16 9 C -0.53 -30.62 8.56 25.60 0.22 -30.40 16 10 H 0.05 2.66 7.74 -2.92 -0.02 2.64 16 11 C 0.01 0.62 5.30 84.65 0.45 1.07 16 12 N -0.92 -55.80 11.32 21.45 0.24 -55.56 16 13 Si 0.95 45.90 29.54 68.60 2.03 47.93 16 14 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 15 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 16 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 17 C -0.08 -4.01 4.82 30.59 0.15 -3.86 16 18 C -0.10 -3.93 5.52 30.59 0.17 -3.76 16 19 C -0.02 -0.62 4.95 -19.89 -0.10 -0.72 16 20 C -0.17 -4.69 9.32 22.29 0.21 -4.48 16 21 C -0.08 -2.13 10.04 22.25 0.22 -1.91 16 22 C -0.22 -5.42 9.31 22.40 0.21 -5.21 16 23 C 0.20 5.25 6.54 38.21 0.25 5.50 16 24 N -0.65 -13.90 3.41 -747.28 -2.55 -16.44 16 25 C 0.09 1.34 10.63 127.77 1.36 2.70 16 26 C 0.09 1.62 10.11 127.77 1.29 2.91 16 27 C -0.21 -5.76 8.78 22.40 0.20 -5.56 16 28 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 29 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.06 1.20 7.42 -2.39 -0.02 1.18 16 31 H 0.34 9.27 7.27 -89.70 -0.65 8.61 16 32 H 0.05 1.44 7.11 -2.39 -0.02 1.42 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.08 2.00 8.12 -2.38 -0.02 1.98 16 35 H 0.05 2.30 7.48 -2.38 -0.02 2.28 16 36 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 37 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 38 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 39 H 0.04 2.19 6.07 -2.38 -0.01 2.17 16 40 H 0.03 1.70 7.60 -2.38 -0.02 1.68 16 41 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.04 1.63 7.43 -2.38 -0.02 1.61 16 43 H 0.12 3.17 7.24 -2.91 -0.02 3.15 16 44 H 0.13 2.85 8.06 -2.91 -0.02 2.82 16 45 H 0.14 2.75 5.74 -2.91 -0.02 2.73 16 46 H 0.08 1.17 5.31 -2.39 -0.01 1.16 16 47 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.08 1.11 8.07 -2.39 -0.02 1.09 16 51 H 0.06 1.15 6.44 -2.39 -0.02 1.13 16 52 H 0.12 3.08 6.28 -2.91 -0.02 3.06 16 Total: -1.00 -67.57 392.17 3.85 -63.72 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.23 Total: 26.37 kcal Atomic # 6 Polarization: -49.86 SS G_CDS: 5.80 Total: -44.06 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -4.21 Total: -93.96 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -67.57 3.85 -63.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332015.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.665 kcal (2) G-P(sol) polarization free energy of solvation -67.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds