Wall clock time and date at job start Tue Mar 31 2020 10:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38223 * 119.61761 * 2 1 4 4 C 1.38632 * 119.15633 * 180.02562 * 3 2 1 5 5 C 1.38674 * 118.42023 * 359.75684 * 4 3 2 6 6 C 1.38179 * 119.16380 * 0.48815 * 5 4 3 7 7 C 1.50703 * 119.61623 * 179.77689 * 6 5 4 8 8 C 1.53002 * 109.46966 * 44.72339 * 7 6 5 9 9 C 1.52996 * 109.46946 * 284.72267 * 7 6 5 10 10 C 1.53000 * 109.46912 * 164.72251 * 7 6 5 11 11 N 1.46901 * 109.46769 * 179.97438 * 10 7 6 12 12 C 1.46906 * 110.99793 * 180.02562 * 11 10 7 13 13 C 1.52994 * 109.47113 * 275.00325 * 12 11 10 14 14 C 1.53011 * 109.47390 * 299.99726 * 13 12 11 15 15 C 1.52992 * 109.46817 * 300.00523 * 14 13 12 16 16 C 1.50709 * 109.46818 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99846 * 239.99261 * 16 15 14 18 18 C 1.37871 * 119.99679 * 60.00438 * 16 15 14 19 19 N 1.31514 * 120.00351 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99691 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47453 * 89.99686 * 20 18 16 22 22 H 1.48504 * 109.47017 * 209.99191 * 20 18 16 23 23 H 1.48495 * 109.47561 * 329.99537 * 20 18 16 24 24 C 1.53004 * 109.47693 * 59.99669 * 15 14 13 25 25 C 1.52999 * 109.46825 * 299.99814 * 24 15 14 26 26 N 1.31858 * 119.61070 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46847 * 269.97934 * 1 2 3 28 28 H 1.09001 * 109.47116 * 29.97485 * 1 2 3 29 29 H 1.08996 * 109.47349 * 149.97772 * 1 2 3 30 30 H 1.07993 * 120.41979 * 0.02562 * 3 2 1 31 31 H 1.07999 * 120.78734 * 180.02562 * 4 3 2 32 32 H 1.07998 * 120.41343 * 180.24444 * 5 4 3 33 33 H 1.09000 * 109.46986 * 179.97438 * 8 7 6 34 34 H 1.08993 * 109.47662 * 300.00142 * 8 7 6 35 35 H 1.09002 * 109.47075 * 60.00647 * 8 7 6 36 36 H 1.08992 * 109.47554 * 299.99877 * 9 7 6 37 37 H 1.09004 * 109.47108 * 60.00127 * 9 7 6 38 38 H 1.09000 * 109.46870 * 180.02562 * 9 7 6 39 39 H 1.09002 * 109.47398 * 300.00078 * 10 7 6 40 40 H 1.09001 * 109.47194 * 60.00258 * 10 7 6 41 41 H 1.00899 * 111.00283 * 303.95539 * 11 10 7 42 42 H 1.09003 * 109.46871 * 35.00433 * 12 11 10 43 43 H 1.08995 * 109.47731 * 59.99955 * 13 12 11 44 44 H 1.08996 * 109.47268 * 180.02562 * 13 12 11 45 45 H 1.08996 * 109.47288 * 179.97438 * 14 13 12 46 46 H 1.08996 * 109.46365 * 60.00121 * 14 13 12 47 47 H 1.08993 * 109.47731 * 299.99316 * 15 14 13 48 48 H 0.96996 * 120.00079 * 180.02562 * 19 18 16 49 49 H 1.09005 * 109.47372 * 179.97438 * 24 15 14 50 50 H 1.09001 * 109.47008 * 59.99715 * 24 15 14 51 51 H 1.09001 * 109.47247 * 299.99755 * 25 24 15 52 52 H 1.08998 * 109.46901 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5765 1.1905 -0.0005 5 6 4.2266 -0.0344 0.0041 6 6 3.4766 -1.1949 -0.0012 7 6 4.1726 -2.5315 -0.0013 8 6 5.3133 -2.5126 1.0182 9 6 4.7386 -2.8116 -1.3948 10 6 3.1725 -3.6273 0.3727 11 7 3.8508 -4.9303 0.3720 12 6 2.9190 -6.0091 0.7269 13 6 2.8331 -6.1283 2.2498 14 6 4.2191 -6.4448 2.8157 15 6 4.7203 -7.7655 2.2281 16 6 6.0857 -8.0769 2.7850 17 1 6.9298 -8.1797 2.1192 18 6 6.2570 -8.2308 4.1444 19 7 5.2291 -8.1054 4.9551 20 14 7.9491 -8.6175 4.8345 21 1 8.6610 -7.3503 5.1393 22 1 7.8058 -9.4160 6.0784 23 1 8.7261 -9.3936 3.8349 24 6 4.8062 -7.6463 0.7052 25 6 3.4204 -7.3299 0.1394 26 7 2.1586 -1.1464 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3634 -0.8897 -0.5142 30 1 1.6508 2.1372 0.0004 31 1 4.1367 2.1138 -0.0001 32 1 5.3056 -0.0806 0.0078 33 1 5.8165 -3.4795 1.0184 34 1 6.0258 -1.7319 0.7519 35 1 4.9100 -2.3131 2.0110 36 1 3.9261 -2.8251 -2.1211 37 1 5.4512 -2.0309 -1.6613 38 1 5.2417 -3.7786 -1.3950 39 1 2.7692 -3.4278 1.3655 40 1 2.3598 -3.6408 -0.3536 41 1 4.2885 -5.1097 -0.5193 42 1 1.9317 -5.7837 0.3238 43 1 2.4760 -5.1875 2.6684 44 1 2.1421 -6.9291 2.5132 45 1 4.1579 -6.5293 3.9006 46 1 4.9104 -5.6444 2.5523 47 1 4.0290 -8.5660 2.4914 48 1 5.3497 -8.2133 5.9115 49 1 5.1638 -8.5872 0.2866 50 1 5.4976 -6.8459 0.4418 51 1 2.7290 -8.1304 0.4028 52 1 3.4816 -7.2446 -0.9455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173333691.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:34 Heat of formation + Delta-G solvation = 6.515818 kcal Electronic energy + Delta-G solvation = -27476.403108 eV Core-core repulsion = 24053.317691 eV Total energy + Delta-G solvation = -3423.085416 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.68930 -38.44856 -36.70231 -33.74049 -32.94377 -32.01769 -31.13997 -29.56572 -28.55763 -27.51643 -27.04490 -25.38534 -24.32504 -23.35571 -21.97410 -21.35483 -20.39007 -19.19457 -18.02866 -16.68769 -16.46976 -16.16541 -15.38819 -15.05790 -14.91719 -14.62164 -14.37121 -14.20415 -13.71987 -13.41085 -13.37082 -13.05947 -12.79456 -12.61479 -12.48872 -12.41428 -12.16495 -11.99786 -11.85836 -11.52313 -11.36644 -11.19569 -11.13519 -10.91616 -10.89149 -10.71693 -10.54869 -10.41479 -10.07726 -9.93869 -9.91947 -9.61223 -9.41279 -9.12570 -8.88672 -8.72465 -8.40535 -8.10068 -7.72952 -5.81683 -3.86722 0.98185 1.16892 3.39048 3.45496 3.48641 3.63381 4.01875 4.37295 4.54940 4.56275 4.79873 4.90337 5.00712 5.05171 5.09953 5.17607 5.34535 5.39532 5.40734 5.47499 5.55554 5.61614 5.67225 5.71260 5.79297 5.85885 5.88652 5.94857 6.02412 6.04867 6.10560 6.12393 6.28259 6.30418 6.41794 6.47537 6.56398 6.58922 6.62021 6.68866 6.73823 6.89962 6.99823 7.16333 7.40106 7.59449 7.68818 7.81207 7.91357 7.95552 7.97923 8.30369 8.40742 8.68649 9.17683 9.76411 11.23371 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017719 B = 0.003111 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.824690 B = 8997.966351 C = 9428.071370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.128 3.872 3 C -0.185 4.185 4 C -0.072 4.072 5 C -0.175 4.175 6 C 0.155 3.845 7 C -0.013 4.013 8 C -0.131 4.131 9 C -0.139 4.139 10 C 0.086 3.914 11 N -0.671 5.671 12 C 0.096 3.904 13 C -0.104 4.104 14 C -0.095 4.095 15 C 0.052 3.948 16 C -0.505 4.505 17 H 0.051 0.949 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.885 3.115 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.276 1.276 24 C -0.101 4.101 25 C -0.118 4.118 26 N -0.478 5.478 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.031 0.969 41 H 0.332 0.668 42 H 0.023 0.977 43 H 0.037 0.963 44 H 0.046 0.954 45 H 0.079 0.921 46 H 0.048 0.952 47 H 0.016 0.984 48 H 0.256 0.744 49 H 0.037 0.963 50 H 0.056 0.944 51 H 0.058 0.942 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.536 18.185 -12.300 22.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.010 4.010 3 C -0.205 4.205 4 C -0.098 4.098 5 C -0.195 4.195 6 C 0.017 3.983 7 C -0.014 4.014 8 C -0.189 4.189 9 C -0.196 4.196 10 C -0.043 4.043 11 N -0.303 5.303 12 C -0.013 4.013 13 C -0.143 4.143 14 C -0.133 4.133 15 C 0.034 3.966 16 C -0.543 4.543 17 H 0.069 0.931 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.713 3.287 21 H -0.209 1.209 22 H -0.215 1.215 23 H -0.201 1.201 24 C -0.138 4.138 25 C -0.156 4.156 26 N -0.188 5.188 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.151 0.849 42 H 0.041 0.959 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.097 0.903 46 H 0.067 0.933 47 H 0.034 0.966 48 H 0.066 0.934 49 H 0.055 0.945 50 H 0.075 0.925 51 H 0.077 0.923 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.832 17.456 -11.468 21.975 hybrid contribution 0.815 0.723 -0.294 1.128 sum -6.018 18.179 -11.762 22.473 Atomic orbital electron populations 1.20706 0.89037 1.03252 1.03098 1.21303 0.96946 0.88352 0.94392 1.21889 0.95001 0.99127 1.04464 1.21546 0.94451 0.98192 0.95641 1.21933 1.01614 0.92779 1.03134 1.21275 0.89072 0.95243 0.92723 1.19530 0.95451 0.89626 0.96784 1.21830 0.96313 1.03199 0.97558 1.21879 1.00577 1.02483 0.94703 1.21738 0.93535 0.88009 1.01035 1.60508 1.32774 1.00870 1.36183 1.21458 0.92048 0.90368 0.97403 1.21592 1.00752 0.98857 0.93063 1.21407 0.91864 0.98162 1.01899 1.18596 0.95745 0.93726 0.88541 1.21242 0.94594 1.46771 0.91719 0.93096 1.24944 0.96134 0.95674 0.97279 1.69901 1.29306 1.50727 1.03108 0.86718 0.85289 0.78214 0.78445 1.20874 1.21502 1.20141 1.21524 0.93650 0.99151 0.99495 1.21742 0.99864 0.96379 0.97587 1.67384 1.09515 1.29099 1.12778 0.90415 0.90949 0.90486 0.85210 0.85054 0.84738 0.89573 0.93493 0.92701 0.92985 0.92568 0.90888 0.91106 0.95042 0.84909 0.95863 0.94445 0.93492 0.90266 0.93305 0.96600 0.93370 0.94453 0.92535 0.92327 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 10.17 36.01 0.37 -0.49 16 2 C 0.13 1.42 6.78 -82.58 -0.56 0.86 16 3 C -0.18 -1.73 9.74 -39.44 -0.38 -2.11 16 4 C -0.07 -0.67 10.18 -39.28 -0.40 -1.07 16 5 C -0.17 -1.87 9.09 -39.44 -0.36 -2.23 16 6 C 0.16 1.96 5.56 -82.59 -0.46 1.50 16 7 C -0.01 -0.16 0.69 -155.66 -0.11 -0.27 16 8 C -0.13 -1.72 7.92 37.16 0.29 -1.43 16 9 C -0.14 -1.53 8.08 37.16 0.30 -1.23 16 10 C 0.09 1.27 3.78 -3.82 -0.01 1.25 16 11 N -0.67 -10.57 4.04 -106.72 -0.43 -11.01 16 12 C 0.10 1.67 2.82 -67.71 -0.19 1.48 16 13 C -0.10 -2.11 5.53 -26.73 -0.15 -2.26 16 14 C -0.10 -2.29 4.82 -26.73 -0.13 -2.42 16 15 C 0.05 1.32 2.10 -91.77 -0.19 1.12 16 16 C -0.50 -14.11 8.56 -34.44 -0.29 -14.40 16 17 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 18 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 19 N -0.89 -26.05 11.32 55.43 0.63 -25.42 16 20 Si 0.88 21.77 29.54 -169.99 -5.02 16.75 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C -0.10 -2.10 4.98 -26.73 -0.13 -2.23 16 25 C -0.12 -2.07 5.30 -26.73 -0.14 -2.22 16 26 N -0.48 -6.38 8.94 -5.74 -0.05 -6.43 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 32 H 0.13 1.22 6.71 -52.49 -0.35 0.87 16 33 H 0.09 1.28 7.60 -51.93 -0.39 0.88 16 34 H 0.05 0.51 6.69 -51.93 -0.35 0.17 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 38 H 0.07 0.80 6.57 -51.93 -0.34 0.46 16 39 H 0.07 1.19 7.44 -51.93 -0.39 0.80 16 40 H 0.03 0.48 7.77 -51.93 -0.40 0.07 16 41 H 0.33 4.84 6.22 -39.29 -0.24 4.59 16 42 H 0.02 0.39 7.80 -51.93 -0.40 -0.02 16 43 H 0.04 0.73 7.45 -51.93 -0.39 0.35 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 46 H 0.05 1.20 7.60 -51.93 -0.39 0.80 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 49 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 50 H 0.06 1.17 7.48 -51.93 -0.39 0.78 16 51 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 52 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16 LS Contribution 393.58 15.07 5.93 5.93 Total: -1.00 -30.05 393.58 -10.98 -41.03 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -9.39 Total: 3.69 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: -2.65 Total: -24.54 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.15 Total: -42.86 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.05 -10.98 -41.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173333691.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.546 kcal (2) G-P(sol) polarization free energy of solvation -30.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds