Wall clock time and date at job start Tue Mar 31 2020 10:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38223 * 119.61761 * 2 1 4 4 C 1.38632 * 119.15633 * 180.02562 * 3 2 1 5 5 C 1.38674 * 118.42023 * 359.75684 * 4 3 2 6 6 C 1.38179 * 119.16380 * 0.48815 * 5 4 3 7 7 C 1.50703 * 119.61623 * 179.77689 * 6 5 4 8 8 C 1.53002 * 109.46966 * 44.72339 * 7 6 5 9 9 C 1.52996 * 109.46946 * 284.72267 * 7 6 5 10 10 C 1.53000 * 109.46912 * 164.72251 * 7 6 5 11 11 N 1.46901 * 109.46769 * 179.97438 * 10 7 6 12 12 C 1.46906 * 110.99793 * 180.02562 * 11 10 7 13 13 C 1.52994 * 109.47113 * 275.00325 * 12 11 10 14 14 C 1.53011 * 109.47390 * 299.99726 * 13 12 11 15 15 C 1.52992 * 109.46817 * 300.00523 * 14 13 12 16 16 C 1.50709 * 109.46818 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99846 * 239.99261 * 16 15 14 18 18 C 1.37871 * 119.99679 * 60.00438 * 16 15 14 19 19 N 1.31514 * 120.00351 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99691 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47453 * 89.99686 * 20 18 16 22 22 H 1.48504 * 109.47017 * 209.99191 * 20 18 16 23 23 H 1.48495 * 109.47561 * 329.99537 * 20 18 16 24 24 C 1.53004 * 109.47693 * 59.99669 * 15 14 13 25 25 C 1.52999 * 109.46825 * 299.99814 * 24 15 14 26 26 N 1.31858 * 119.61070 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46847 * 269.97934 * 1 2 3 28 28 H 1.09001 * 109.47116 * 29.97485 * 1 2 3 29 29 H 1.08996 * 109.47349 * 149.97772 * 1 2 3 30 30 H 1.07993 * 120.41979 * 0.02562 * 3 2 1 31 31 H 1.07999 * 120.78734 * 180.02562 * 4 3 2 32 32 H 1.07998 * 120.41343 * 180.24444 * 5 4 3 33 33 H 1.09000 * 109.46986 * 179.97438 * 8 7 6 34 34 H 1.08993 * 109.47662 * 300.00142 * 8 7 6 35 35 H 1.09002 * 109.47075 * 60.00647 * 8 7 6 36 36 H 1.08992 * 109.47554 * 299.99877 * 9 7 6 37 37 H 1.09004 * 109.47108 * 60.00127 * 9 7 6 38 38 H 1.09000 * 109.46870 * 180.02562 * 9 7 6 39 39 H 1.09002 * 109.47398 * 300.00078 * 10 7 6 40 40 H 1.09001 * 109.47194 * 60.00258 * 10 7 6 41 41 H 1.00899 * 111.00283 * 303.95539 * 11 10 7 42 42 H 1.09003 * 109.46871 * 35.00433 * 12 11 10 43 43 H 1.08995 * 109.47731 * 59.99955 * 13 12 11 44 44 H 1.08996 * 109.47268 * 180.02562 * 13 12 11 45 45 H 1.08996 * 109.47288 * 179.97438 * 14 13 12 46 46 H 1.08996 * 109.46365 * 60.00121 * 14 13 12 47 47 H 1.08993 * 109.47731 * 299.99316 * 15 14 13 48 48 H 0.96996 * 120.00079 * 180.02562 * 19 18 16 49 49 H 1.09005 * 109.47372 * 179.97438 * 24 15 14 50 50 H 1.09001 * 109.47008 * 59.99715 * 24 15 14 51 51 H 1.09001 * 109.47247 * 299.99755 * 25 24 15 52 52 H 1.08998 * 109.46901 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5765 1.1905 -0.0005 5 6 4.2266 -0.0344 0.0041 6 6 3.4766 -1.1949 -0.0012 7 6 4.1726 -2.5315 -0.0013 8 6 5.3133 -2.5126 1.0182 9 6 4.7386 -2.8116 -1.3948 10 6 3.1725 -3.6273 0.3727 11 7 3.8508 -4.9303 0.3720 12 6 2.9190 -6.0091 0.7269 13 6 2.8331 -6.1283 2.2498 14 6 4.2191 -6.4448 2.8157 15 6 4.7203 -7.7655 2.2281 16 6 6.0857 -8.0769 2.7850 17 1 6.9298 -8.1797 2.1192 18 6 6.2570 -8.2308 4.1444 19 7 5.2291 -8.1054 4.9551 20 14 7.9491 -8.6175 4.8345 21 1 8.6610 -7.3503 5.1393 22 1 7.8058 -9.4160 6.0784 23 1 8.7261 -9.3936 3.8349 24 6 4.8062 -7.6463 0.7052 25 6 3.4204 -7.3299 0.1394 26 7 2.1586 -1.1464 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3634 -0.8897 -0.5142 30 1 1.6508 2.1372 0.0004 31 1 4.1367 2.1138 -0.0001 32 1 5.3056 -0.0806 0.0078 33 1 5.8165 -3.4795 1.0184 34 1 6.0258 -1.7319 0.7519 35 1 4.9100 -2.3131 2.0110 36 1 3.9261 -2.8251 -2.1211 37 1 5.4512 -2.0309 -1.6613 38 1 5.2417 -3.7786 -1.3950 39 1 2.7692 -3.4278 1.3655 40 1 2.3598 -3.6408 -0.3536 41 1 4.2885 -5.1097 -0.5193 42 1 1.9317 -5.7837 0.3238 43 1 2.4760 -5.1875 2.6684 44 1 2.1421 -6.9291 2.5132 45 1 4.1579 -6.5293 3.9006 46 1 4.9104 -5.6444 2.5523 47 1 4.0290 -8.5660 2.4914 48 1 5.3497 -8.2133 5.9115 49 1 5.1638 -8.5872 0.2866 50 1 5.4976 -6.8459 0.4418 51 1 2.7290 -8.1304 0.4028 52 1 3.4816 -7.2446 -0.9455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173333691.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:33 Heat of formation + Delta-G solvation = -8.380940 kcal Electronic energy + Delta-G solvation = -27477.049080 eV Core-core repulsion = 24053.317691 eV Total energy + Delta-G solvation = -3423.731388 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.51837 -39.90442 -37.90765 -35.39214 -33.90678 -33.37109 -32.27008 -31.29564 -30.17698 -28.34773 -27.96342 -26.75452 -26.04902 -24.28908 -23.14145 -22.72989 -22.16487 -20.17003 -19.69372 -18.31033 -17.53456 -17.30845 -16.62021 -16.43187 -16.14830 -16.05495 -15.61817 -15.22742 -14.95060 -14.53439 -14.50803 -14.40817 -14.09230 -13.83191 -13.81380 -13.41245 -13.27449 -13.13684 -12.94148 -12.89316 -12.86085 -12.70055 -12.59066 -12.49649 -12.43589 -12.00886 -11.89478 -11.84424 -11.70189 -11.55211 -11.52182 -11.06805 -10.71485 -10.63443 -10.34919 -10.25895 -10.20367 -9.66393 -9.05138 -7.98709 -6.12031 0.20499 0.42314 1.42507 1.42959 1.52972 2.48294 2.84422 3.19787 3.26346 3.29950 3.81825 3.89019 4.02801 4.06343 4.11841 4.21458 4.22313 4.30112 4.32861 4.35900 4.65557 4.68007 4.72587 4.76506 4.79052 4.80446 4.84241 4.86537 4.88284 4.95533 4.97973 5.03298 5.07953 5.10074 5.15312 5.19959 5.20746 5.24099 5.27896 5.35348 5.39081 5.44998 5.53721 5.56739 5.68443 5.75076 5.87368 5.89261 6.22431 6.29523 6.36028 6.55169 6.72489 7.02342 7.15860 7.54826 9.04448 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017719 B = 0.003111 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.824690 B = 8997.966351 C = 9428.071370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.106 3.894 3 C -0.182 4.182 4 C -0.073 4.073 5 C -0.182 4.182 6 C 0.132 3.868 7 C -0.007 4.007 8 C -0.125 4.125 9 C -0.132 4.132 10 C 0.099 3.901 11 N -0.676 5.676 12 C 0.104 3.896 13 C -0.098 4.098 14 C -0.080 4.080 15 C 0.050 3.950 16 C -0.525 4.525 17 H 0.049 0.951 18 C 0.009 3.991 19 N -0.919 5.919 20 Si 0.948 3.052 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.268 1.268 24 C -0.091 4.091 25 C -0.110 4.110 26 N -0.511 5.511 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.160 0.840 31 H 0.163 0.837 32 H 0.149 0.851 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.033 0.967 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.043 0.957 40 H 0.029 0.971 41 H 0.343 0.657 42 H 0.040 0.960 43 H 0.037 0.963 44 H 0.039 0.961 45 H 0.039 0.961 46 H 0.039 0.961 47 H -0.019 1.019 48 H 0.256 0.744 49 H 0.036 0.964 50 H 0.059 0.941 51 H 0.056 0.944 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 20.214 -14.182 25.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.098 4.098 5 C -0.202 4.202 6 C -0.006 4.006 7 C -0.008 4.008 8 C -0.182 4.182 9 C -0.190 4.190 10 C -0.031 4.031 11 N -0.310 5.310 12 C -0.005 4.005 13 C -0.136 4.136 14 C -0.118 4.118 15 C 0.031 3.969 16 C -0.563 4.563 17 H 0.067 0.933 18 C -0.189 4.189 19 N -0.559 5.559 20 Si 0.775 3.225 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.193 1.193 24 C -0.129 4.129 25 C -0.148 4.148 26 N -0.221 5.221 27 H 0.098 0.902 28 H 0.116 0.884 29 H 0.084 0.916 30 H 0.177 0.823 31 H 0.181 0.819 32 H 0.166 0.834 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.164 0.836 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.058 0.942 47 H -0.001 1.001 48 H 0.065 0.935 49 H 0.055 0.945 50 H 0.077 0.923 51 H 0.075 0.925 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.265 19.485 -13.369 24.447 hybrid contribution 0.606 0.140 0.335 0.707 sum -5.659 19.625 -13.034 24.229 Atomic orbital electron populations 1.20757 0.87590 1.04009 1.03450 1.21803 0.98188 0.88574 0.94619 1.22254 0.95378 0.99644 1.02878 1.21961 0.94722 0.98848 0.94275 1.22131 1.02330 0.92778 1.02930 1.21283 0.89317 0.95600 0.94418 1.19434 0.94615 0.89352 0.97444 1.21746 0.96851 1.02866 0.96784 1.21827 1.00748 1.03003 0.93438 1.21571 0.94044 0.88140 0.99309 1.60396 1.32652 1.00888 1.37048 1.21292 0.93338 0.91027 0.94877 1.21477 0.98043 0.98473 0.95637 1.21113 0.93901 0.97346 0.99423 1.18574 0.93752 0.92788 0.91758 1.21638 0.95744 1.46799 0.92162 0.93267 1.25728 0.99776 0.95625 0.97730 1.70063 1.31272 1.51379 1.03192 0.85706 0.80923 0.78153 0.77749 1.20288 1.21240 1.19263 1.21354 0.96008 0.99275 0.96237 1.21673 0.97456 0.96185 0.99494 1.67321 1.10102 1.30705 1.14003 0.90189 0.88358 0.91560 0.82257 0.81921 0.83356 0.91490 0.91091 0.94804 0.93104 0.90990 0.90920 0.93875 0.95299 0.83635 0.94206 0.94389 0.94220 0.94275 0.94240 1.00128 0.93496 0.94540 0.92250 0.92547 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.54 10.17 71.24 0.72 -0.82 16 2 C 0.11 2.22 6.78 42.55 0.29 2.50 16 3 C -0.18 -2.93 9.74 22.36 0.22 -2.71 16 4 C -0.07 -1.13 10.18 22.47 0.23 -0.90 16 5 C -0.18 -3.54 9.09 22.36 0.20 -3.33 16 6 C 0.13 3.23 5.56 42.54 0.24 3.46 16 7 C -0.01 -0.18 0.69 -52.93 -0.04 -0.21 16 8 C -0.12 -3.25 7.92 71.98 0.57 -2.68 16 9 C -0.13 -2.70 8.08 71.98 0.58 -2.12 16 10 C 0.10 2.90 3.78 86.30 0.33 3.23 16 11 N -0.68 -20.95 4.04 -491.55 -1.98 -22.94 16 12 C 0.10 3.54 2.82 44.91 0.13 3.67 16 13 C -0.10 -4.07 5.53 30.60 0.17 -3.90 16 14 C -0.08 -3.99 4.82 30.60 0.15 -3.84 16 15 C 0.05 2.58 2.10 -11.54 -0.02 2.55 16 16 C -0.53 -30.00 8.56 25.60 0.22 -29.78 16 17 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 18 C 0.01 0.52 5.30 84.65 0.45 0.97 16 19 N -0.92 -55.56 11.32 21.45 0.24 -55.32 16 20 Si 0.95 45.27 29.54 68.60 2.03 47.30 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 24 C -0.09 -3.78 4.98 30.60 0.15 -3.62 16 25 C -0.11 -3.72 5.30 30.59 0.16 -3.56 16 26 N -0.51 -13.45 8.94 -172.07 -1.54 -14.98 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.10 0.94 8.08 -2.39 -0.02 0.92 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 31 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 32 H 0.15 2.32 6.71 -2.91 -0.02 2.30 16 33 H 0.07 1.99 7.60 -2.39 -0.02 1.97 16 34 H 0.07 1.46 6.69 -2.39 -0.02 1.44 16 35 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.24 8.10 -2.38 -0.02 1.22 16 38 H 0.07 1.47 6.57 -2.39 -0.02 1.45 16 39 H 0.04 1.50 7.44 -2.39 -0.02 1.48 16 40 H 0.03 0.87 7.77 -2.39 -0.02 0.85 16 41 H 0.34 9.45 6.22 -89.69 -0.56 8.89 16 42 H 0.04 1.27 7.80 -2.39 -0.02 1.25 16 43 H 0.04 1.54 7.45 -2.39 -0.02 1.53 16 44 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.04 2.26 6.07 -2.39 -0.01 2.24 16 46 H 0.04 2.00 7.60 -2.39 -0.02 1.98 16 47 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 48 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 49 H 0.04 1.49 8.14 -2.38 -0.02 1.48 16 50 H 0.06 2.42 7.48 -2.39 -0.02 2.40 16 51 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 52 H 0.07 2.07 8.12 -2.39 -0.02 2.05 16 Total: -1.00 -67.64 393.58 3.81 -63.84 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.32 Total: 23.21 kcal Atomic # 6 Polarization: -45.84 SS G_CDS: 4.74 Total: -41.10 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -3.28 Total: -93.25 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -67.64 3.81 -63.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173333691.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.455 kcal (2) G-P(sol) polarization free energy of solvation -67.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds