Wall clock time and date at job start Tue Mar 31 2020 10:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38674 * 120.41785 * 2 1 4 4 C 1.38626 * 118.42219 * 179.78109 * 3 2 1 5 5 C 1.38230 * 119.16087 * 0.51770 * 4 3 2 6 6 N 1.31851 * 120.75938 * 359.72529 * 5 4 3 7 7 C 1.31883 * 121.73193 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.62163 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47109 * 128.30721 * 8 7 6 10 10 C 1.52990 * 109.47546 * 248.31083 * 8 7 6 11 11 C 1.53001 * 109.47000 * 8.31189 * 8 7 6 12 12 N 1.46905 * 109.47308 * 179.97438 * 11 8 7 13 13 C 1.46898 * 110.99882 * 180.02562 * 12 11 8 14 14 C 1.53002 * 109.46918 * 274.99654 * 13 12 11 15 15 C 1.53000 * 109.46981 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47288 * 60.00024 * 15 14 13 17 17 C 1.50703 * 109.46897 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99960 * 120.00309 * 17 16 15 19 19 C 1.37881 * 120.00020 * 299.99693 * 17 16 15 20 20 N 1.31514 * 119.99783 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00051 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47161 * 60.00165 * 21 19 17 23 23 H 1.48500 * 109.47298 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47295 * 300.00588 * 21 19 17 25 25 C 1.52993 * 109.47021 * 299.99942 * 16 15 14 26 26 C 1.52999 * 109.47381 * 60.00338 * 25 16 15 27 27 H 1.08997 * 109.47062 * 273.61851 * 1 2 3 28 28 H 1.09002 * 109.46532 * 153.61750 * 1 2 3 29 29 H 1.08997 * 109.47121 * 33.62030 * 1 2 3 30 30 H 1.08002 * 120.78978 * 0.02562 * 3 2 1 31 31 H 1.07999 * 120.42178 * 180.21992 * 4 3 2 32 32 H 1.07998 * 119.61832 * 179.74373 * 5 4 3 33 33 H 1.09002 * 109.47007 * 60.00136 * 9 8 7 34 34 H 1.08996 * 109.47319 * 180.02562 * 9 8 7 35 35 H 1.09003 * 109.47163 * 300.00470 * 9 8 7 36 36 H 1.09001 * 109.47561 * 74.05213 * 10 8 7 37 37 H 1.09008 * 109.47294 * 194.05124 * 10 8 7 38 38 H 1.09003 * 109.47340 * 314.04674 * 10 8 7 39 39 H 1.08998 * 109.47315 * 299.99811 * 11 8 7 40 40 H 1.09003 * 109.47161 * 59.99597 * 11 8 7 41 41 H 1.00900 * 110.99681 * 303.95028 * 12 11 8 42 42 H 1.08997 * 109.47737 * 35.00201 * 13 12 11 43 43 H 1.09004 * 109.47309 * 300.00407 * 14 13 12 44 44 H 1.09002 * 109.46734 * 60.00515 * 14 13 12 45 45 H 1.09004 * 109.47108 * 300.00134 * 15 14 13 46 46 H 1.09005 * 109.46816 * 180.02562 * 15 14 13 47 47 H 1.09004 * 109.46957 * 60.00017 * 16 15 14 48 48 H 0.97002 * 119.99546 * 179.97438 * 20 19 17 49 49 H 1.08997 * 109.47371 * 299.99486 * 25 16 15 50 50 H 1.09007 * 109.47118 * 179.97438 * 25 16 15 51 51 H 1.08997 * 109.47748 * 179.97438 * 26 25 16 52 52 H 1.08997 * 109.47564 * 59.99266 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1476 0.0047 5 6 4.2256 -0.0822 -0.0018 6 7 3.5255 -1.1994 -0.0068 7 6 2.2067 -1.1916 -0.0054 8 6 1.4540 -2.4971 -0.0119 9 6 0.4258 -2.4987 1.1211 10 6 0.7361 -2.6653 -1.3524 11 6 2.4361 -3.6530 0.1891 12 7 1.7024 -4.9256 0.1834 13 6 2.6153 -6.0604 0.3750 14 6 3.2080 -6.4716 -0.9743 15 6 4.1583 -7.6539 -0.7749 16 6 3.3878 -8.8323 -0.1760 17 6 4.3241 -9.9966 0.0210 18 1 4.4803 -10.4026 1.0095 19 6 4.9811 -10.5436 -1.0608 20 7 4.7911 -10.0489 -2.2644 21 14 6.1411 -11.9872 -0.8167 22 1 5.3928 -13.1308 -0.2358 23 1 6.7174 -12.3861 -2.1259 24 1 7.2358 -11.5923 0.1059 25 6 2.7952 -8.4211 1.1732 26 6 1.8447 -7.2388 0.9739 27 1 -0.3633 0.0649 1.0256 28 1 -0.3632 -0.9207 -0.4567 29 1 -0.3633 0.8557 -0.5690 30 1 1.6889 2.1424 0.0004 31 1 4.1735 2.0593 0.0084 32 1 5.3046 -0.1284 -0.0024 33 1 -0.2738 -1.6752 0.9779 34 1 -0.1183 -3.4431 1.1167 35 1 0.9374 -2.3789 2.0761 36 1 1.4633 -2.9132 -2.1256 37 1 0.0021 -3.4673 -1.2734 38 1 0.2311 -1.7352 -1.6134 39 1 3.1687 -3.6519 -0.6180 40 1 2.9477 -3.5332 1.1442 41 1 0.9739 -4.9261 0.8816 42 1 3.4190 -5.7701 1.0516 43 1 2.4042 -6.7620 -1.6509 44 1 3.7567 -5.6320 -1.4011 45 1 4.9621 -7.3639 -0.0981 46 1 4.5809 -7.9466 -1.7361 47 1 2.5840 -9.1223 -0.8527 48 1 5.2537 -10.4335 -3.0254 49 1 3.5989 -8.1311 1.8499 50 1 2.2458 -9.2605 1.5997 51 1 1.4221 -6.9462 1.9350 52 1 1.0410 -7.5288 0.2971 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173334776.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:16 Heat of formation + Delta-G solvation = 19.389653 kcal Electronic energy + Delta-G solvation = -27111.764171 eV Core-core repulsion = 23689.237006 eV Total energy + Delta-G solvation = -3422.527165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.97367 -38.32396 -36.91394 -34.39322 -33.47889 -32.03440 -30.68112 -29.61658 -28.48128 -27.96949 -27.21981 -25.15574 -24.01838 -23.42823 -22.15796 -21.53251 -20.27666 -19.42764 -18.56355 -16.81104 -16.63204 -16.23209 -15.56566 -15.12221 -14.74612 -14.60757 -14.48646 -14.29597 -13.79504 -13.72442 -13.53229 -13.18820 -12.96276 -12.89545 -12.68944 -12.43422 -12.32137 -12.04696 -11.84991 -11.62504 -11.39605 -11.20175 -11.06717 -10.94984 -10.85470 -10.64353 -10.49381 -10.35453 -10.16227 -10.05273 -9.91231 -9.72335 -9.43778 -9.21915 -8.93583 -8.80150 -8.56101 -8.19855 -7.95466 -5.88368 -3.94412 0.91385 1.09621 3.37183 3.41736 3.44361 3.59272 4.06682 4.28506 4.51058 4.57394 4.58886 4.75855 4.83001 4.97656 5.00390 5.05679 5.15606 5.26442 5.37914 5.40593 5.49976 5.52928 5.57641 5.63069 5.68020 5.75112 5.84118 5.92934 5.97995 5.99621 6.02948 6.09619 6.12535 6.28444 6.36061 6.37104 6.45788 6.54388 6.56213 6.58830 6.76274 6.83393 6.86413 7.06788 7.26535 7.38692 7.54837 7.69356 7.77954 7.86619 7.89963 8.14637 8.29008 8.58227 9.09686 9.69470 11.16980 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024054 B = 0.002592 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.754075 B =10800.557388 C =11382.978972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.133 4.133 3 C -0.079 4.079 4 C -0.180 4.180 5 C 0.095 3.905 6 N -0.473 5.473 7 C 0.147 3.853 8 C -0.012 4.012 9 C -0.166 4.166 10 C -0.133 4.133 11 C 0.086 3.914 12 N -0.687 5.687 13 C 0.093 3.907 14 C -0.099 4.099 15 C -0.109 4.109 16 C 0.050 3.950 17 C -0.513 4.513 18 H 0.052 0.948 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.888 3.112 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.279 1.279 25 C -0.106 4.106 26 C -0.114 4.114 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.154 0.846 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.080 0.920 40 H 0.026 0.974 41 H 0.329 0.671 42 H 0.035 0.965 43 H 0.057 0.943 44 H 0.038 0.962 45 H 0.029 0.971 46 H 0.091 0.909 47 H 0.025 0.975 48 H 0.259 0.741 49 H 0.044 0.956 50 H 0.046 0.954 51 H 0.039 0.961 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.098 23.986 4.694 26.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.135 4.135 3 C -0.105 4.105 4 C -0.199 4.199 5 C -0.062 4.062 6 N -0.181 5.181 7 C 0.009 3.991 8 C -0.013 4.013 9 C -0.224 4.224 10 C -0.191 4.191 11 C -0.044 4.044 12 N -0.319 5.319 13 C -0.015 4.015 14 C -0.137 4.137 15 C -0.148 4.148 16 C 0.031 3.969 17 C -0.551 4.551 18 H 0.070 0.930 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.716 3.284 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.204 1.204 25 C -0.144 4.144 26 C -0.152 4.152 27 H 0.093 0.907 28 H 0.112 0.888 29 H 0.083 0.917 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.171 0.829 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.044 0.956 41 H 0.148 0.852 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.109 0.891 47 H 0.043 0.957 48 H 0.069 0.931 49 H 0.063 0.937 50 H 0.065 0.935 51 H 0.058 0.942 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.577 23.102 3.814 24.936 hybrid contribution 0.763 0.338 1.103 1.383 sum -7.813 23.439 4.917 25.192 Atomic orbital electron populations 1.21324 0.90689 1.03990 1.02545 1.20636 0.97475 0.93436 1.01938 1.21444 0.94192 0.97931 0.96890 1.22101 0.95267 0.99593 1.02984 1.22781 1.00379 0.87657 0.95344 1.67556 1.07742 1.31263 1.11534 1.21155 0.89530 0.94348 0.94091 1.19478 0.94620 0.90076 0.97124 1.22447 0.99048 1.03648 0.97231 1.21910 1.00740 1.01423 0.95000 1.21777 0.94551 0.87261 1.00769 1.60665 1.14559 1.01959 1.54697 1.21564 0.93129 0.89224 0.97621 1.21571 0.99047 0.98138 0.94985 1.21613 0.96614 0.93278 1.03252 1.18638 0.94789 0.92876 0.90559 1.21216 1.25650 1.14762 0.93482 0.93003 1.24964 0.96811 0.96912 0.95328 1.69879 1.43143 1.41255 0.98596 0.86734 0.81342 0.83180 0.77147 1.20401 1.21381 1.20428 1.21593 0.97027 0.95058 1.00717 1.21709 0.98922 0.96074 0.98541 0.90684 0.88780 0.91745 0.85129 0.85045 0.82866 0.90249 0.91188 0.93009 0.92186 0.90670 0.92723 0.90149 0.95568 0.85206 0.94734 0.92447 0.94328 0.95243 0.89089 0.95689 0.93110 0.93680 0.93495 0.94184 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.89 7.69 36.01 0.28 -0.61 16 2 C -0.13 -1.27 5.60 -104.48 -0.58 -1.85 16 3 C -0.08 -0.66 9.87 -39.28 -0.39 -1.05 16 4 C -0.18 -1.53 10.11 -39.44 -0.40 -1.93 16 5 C 0.10 1.00 11.18 -17.55 -0.20 0.81 16 6 N -0.47 -6.21 9.01 -9.48 -0.09 -6.30 16 7 C 0.15 1.74 5.58 -82.59 -0.46 1.28 16 8 C -0.01 -0.13 0.57 -155.67 -0.09 -0.22 16 9 C -0.17 -1.56 7.64 37.16 0.28 -1.28 16 10 C -0.13 -1.46 7.78 37.15 0.29 -1.17 16 11 C 0.09 1.23 3.64 -3.82 -0.01 1.21 16 12 N -0.69 -10.16 5.80 -106.72 -0.62 -10.78 16 13 C 0.09 1.67 2.49 -67.71 -0.17 1.50 16 14 C -0.10 -2.04 5.43 -26.73 -0.15 -2.19 16 15 C -0.11 -2.66 4.98 -26.73 -0.13 -2.79 16 16 C 0.05 1.26 2.10 -91.77 -0.19 1.07 16 17 C -0.51 -14.40 8.56 -34.44 -0.29 -14.70 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 20 N -0.89 -25.96 11.32 55.43 0.63 -25.33 16 21 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C -0.11 -2.25 5.14 -26.74 -0.14 -2.39 16 26 C -0.11 -2.05 5.19 -26.73 -0.14 -2.19 16 27 H 0.07 0.45 7.32 -51.93 -0.38 0.07 16 28 H 0.09 0.66 3.42 -51.93 -0.18 0.48 16 29 H 0.06 0.36 8.12 -51.93 -0.42 -0.06 16 30 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 31 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.08 0.59 3.70 -51.93 -0.19 0.40 16 34 H 0.07 0.63 6.57 -51.93 -0.34 0.29 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 37 H 0.07 0.82 7.97 -51.92 -0.41 0.40 16 38 H 0.05 0.50 5.33 -51.93 -0.28 0.22 16 39 H 0.08 1.33 7.23 -51.93 -0.38 0.95 16 40 H 0.03 0.40 8.05 -51.93 -0.42 -0.01 16 41 H 0.33 4.34 6.38 -39.29 -0.25 4.09 16 42 H 0.03 0.65 7.80 -51.93 -0.40 0.25 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.04 0.77 7.45 -51.93 -0.39 0.38 16 45 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 47 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 49 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 51 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16 52 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 384.68 15.07 5.80 5.80 Total: -1.00 -30.27 384.68 -10.85 -41.12 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -8.96 Total: 3.65 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -2.59 Total: -24.87 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: -0.08 Total: -42.41 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.27 -10.85 -41.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334776.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.510 kcal (2) G-P(sol) polarization free energy of solvation -30.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds