Wall clock time and date at job start Tue Mar 31 2020 10:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38674 * 120.41785 * 2 1 4 4 C 1.38626 * 118.42219 * 179.78109 * 3 2 1 5 5 C 1.38230 * 119.16087 * 0.51770 * 4 3 2 6 6 N 1.31851 * 120.75938 * 359.72529 * 5 4 3 7 7 C 1.31883 * 121.73193 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.62163 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47109 * 128.30721 * 8 7 6 10 10 C 1.52990 * 109.47546 * 248.31083 * 8 7 6 11 11 C 1.53001 * 109.47000 * 8.31189 * 8 7 6 12 12 N 1.46905 * 109.47308 * 179.97438 * 11 8 7 13 13 C 1.46898 * 110.99882 * 180.02562 * 12 11 8 14 14 C 1.53002 * 109.46918 * 274.99654 * 13 12 11 15 15 C 1.53000 * 109.46981 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47288 * 60.00024 * 15 14 13 17 17 C 1.50703 * 109.46897 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99960 * 120.00309 * 17 16 15 19 19 C 1.37881 * 120.00020 * 299.99693 * 17 16 15 20 20 N 1.31514 * 119.99783 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00051 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47161 * 60.00165 * 21 19 17 23 23 H 1.48500 * 109.47298 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47295 * 300.00588 * 21 19 17 25 25 C 1.52993 * 109.47021 * 299.99942 * 16 15 14 26 26 C 1.52999 * 109.47381 * 60.00338 * 25 16 15 27 27 H 1.08997 * 109.47062 * 273.61851 * 1 2 3 28 28 H 1.09002 * 109.46532 * 153.61750 * 1 2 3 29 29 H 1.08997 * 109.47121 * 33.62030 * 1 2 3 30 30 H 1.08002 * 120.78978 * 0.02562 * 3 2 1 31 31 H 1.07999 * 120.42178 * 180.21992 * 4 3 2 32 32 H 1.07998 * 119.61832 * 179.74373 * 5 4 3 33 33 H 1.09002 * 109.47007 * 60.00136 * 9 8 7 34 34 H 1.08996 * 109.47319 * 180.02562 * 9 8 7 35 35 H 1.09003 * 109.47163 * 300.00470 * 9 8 7 36 36 H 1.09001 * 109.47561 * 74.05213 * 10 8 7 37 37 H 1.09008 * 109.47294 * 194.05124 * 10 8 7 38 38 H 1.09003 * 109.47340 * 314.04674 * 10 8 7 39 39 H 1.08998 * 109.47315 * 299.99811 * 11 8 7 40 40 H 1.09003 * 109.47161 * 59.99597 * 11 8 7 41 41 H 1.00900 * 110.99681 * 303.95028 * 12 11 8 42 42 H 1.08997 * 109.47737 * 35.00201 * 13 12 11 43 43 H 1.09004 * 109.47309 * 300.00407 * 14 13 12 44 44 H 1.09002 * 109.46734 * 60.00515 * 14 13 12 45 45 H 1.09004 * 109.47108 * 300.00134 * 15 14 13 46 46 H 1.09005 * 109.46816 * 180.02562 * 15 14 13 47 47 H 1.09004 * 109.46957 * 60.00017 * 16 15 14 48 48 H 0.97002 * 119.99546 * 179.97438 * 20 19 17 49 49 H 1.08997 * 109.47371 * 299.99486 * 25 16 15 50 50 H 1.09007 * 109.47118 * 179.97438 * 25 16 15 51 51 H 1.08997 * 109.47748 * 179.97438 * 26 25 16 52 52 H 1.08997 * 109.47564 * 59.99266 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1476 0.0047 5 6 4.2256 -0.0822 -0.0018 6 7 3.5255 -1.1994 -0.0068 7 6 2.2067 -1.1916 -0.0054 8 6 1.4540 -2.4971 -0.0119 9 6 0.4258 -2.4987 1.1211 10 6 0.7361 -2.6653 -1.3524 11 6 2.4361 -3.6530 0.1891 12 7 1.7024 -4.9256 0.1834 13 6 2.6153 -6.0604 0.3750 14 6 3.2080 -6.4716 -0.9743 15 6 4.1583 -7.6539 -0.7749 16 6 3.3878 -8.8323 -0.1760 17 6 4.3241 -9.9966 0.0210 18 1 4.4803 -10.4026 1.0095 19 6 4.9811 -10.5436 -1.0608 20 7 4.7911 -10.0489 -2.2644 21 14 6.1411 -11.9872 -0.8167 22 1 5.3928 -13.1308 -0.2358 23 1 6.7174 -12.3861 -2.1259 24 1 7.2358 -11.5923 0.1059 25 6 2.7952 -8.4211 1.1732 26 6 1.8447 -7.2388 0.9739 27 1 -0.3633 0.0649 1.0256 28 1 -0.3632 -0.9207 -0.4567 29 1 -0.3633 0.8557 -0.5690 30 1 1.6889 2.1424 0.0004 31 1 4.1735 2.0593 0.0084 32 1 5.3046 -0.1284 -0.0024 33 1 -0.2738 -1.6752 0.9779 34 1 -0.1183 -3.4431 1.1167 35 1 0.9374 -2.3789 2.0761 36 1 1.4633 -2.9132 -2.1256 37 1 0.0021 -3.4673 -1.2734 38 1 0.2311 -1.7352 -1.6134 39 1 3.1687 -3.6519 -0.6180 40 1 2.9477 -3.5332 1.1442 41 1 0.9739 -4.9261 0.8816 42 1 3.4190 -5.7701 1.0516 43 1 2.4042 -6.7620 -1.6509 44 1 3.7567 -5.6320 -1.4011 45 1 4.9621 -7.3639 -0.0981 46 1 4.5809 -7.9466 -1.7361 47 1 2.5840 -9.1223 -0.8527 48 1 5.2537 -10.4335 -3.0254 49 1 3.5989 -8.1311 1.8499 50 1 2.2458 -9.2605 1.5997 51 1 1.4221 -6.9462 1.9350 52 1 1.0410 -7.5288 0.2971 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334776.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:14 Heat of formation + Delta-G solvation = 3.133698 kcal Electronic energy + Delta-G solvation = -27112.469082 eV Core-core repulsion = 23689.237006 eV Total energy + Delta-G solvation = -3423.232076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.73522 -39.79493 -38.07046 -35.72540 -34.57480 -33.66315 -31.64228 -31.38094 -29.93841 -28.81110 -28.03551 -26.69337 -25.37533 -24.40601 -23.28437 -22.88871 -21.93769 -20.55229 -20.16500 -18.38680 -17.65144 -17.43106 -16.68013 -16.42982 -16.09918 -15.66249 -15.57085 -15.42183 -15.02964 -14.75337 -14.67837 -14.50917 -14.41683 -13.94455 -13.86641 -13.66403 -13.28284 -13.19757 -12.99299 -12.97209 -12.88287 -12.68352 -12.52195 -12.39863 -12.12519 -12.05513 -12.00752 -11.81886 -11.75095 -11.65133 -11.22890 -11.10151 -10.73446 -10.61038 -10.50628 -10.35035 -10.20167 -9.64192 -9.28016 -8.05535 -6.19998 0.20222 0.41195 1.40475 1.42137 1.49690 2.44118 2.86027 3.13879 3.20760 3.34673 3.80638 3.90654 3.97025 4.00847 4.07507 4.13142 4.17310 4.24377 4.28198 4.45430 4.57087 4.60436 4.67258 4.72360 4.77594 4.78585 4.80972 4.83846 4.88048 4.89628 4.91102 4.96471 5.01939 5.06600 5.07910 5.14570 5.19666 5.26376 5.30062 5.34682 5.38586 5.43600 5.49520 5.51284 5.51822 5.62805 5.72281 5.87560 6.05373 6.15436 6.22226 6.43257 6.63780 6.93061 7.14853 7.47663 8.98170 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024054 B = 0.002592 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.754075 B =10800.557388 C =11382.978972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.134 4.134 3 C -0.082 4.082 4 C -0.173 4.173 5 C 0.070 3.930 6 N -0.515 5.515 7 C 0.120 3.880 8 C -0.006 4.006 9 C -0.162 4.162 10 C -0.129 4.129 11 C 0.095 3.905 12 N -0.678 5.678 13 C 0.104 3.896 14 C -0.088 4.088 15 C -0.100 4.100 16 C 0.047 3.953 17 C -0.536 4.536 18 H 0.051 0.949 19 C 0.010 3.990 20 N -0.917 5.917 21 Si 0.952 3.048 22 H -0.270 1.270 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.100 4.100 26 C -0.105 4.105 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.163 0.837 31 H 0.161 0.839 32 H 0.163 0.837 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.033 0.967 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.013 0.987 41 H 0.345 0.655 42 H 0.026 0.974 43 H 0.047 0.953 44 H 0.037 0.963 45 H 0.019 0.981 46 H 0.056 0.944 47 H -0.006 1.006 48 H 0.259 0.741 49 H 0.043 0.957 50 H 0.051 0.949 51 H 0.075 0.925 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.790 26.027 6.058 28.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.136 4.136 3 C -0.107 4.107 4 C -0.192 4.192 5 C -0.086 4.086 6 N -0.224 5.224 7 C -0.018 4.018 8 C -0.007 4.007 9 C -0.219 4.219 10 C -0.186 4.186 11 C -0.034 4.034 12 N -0.311 5.311 13 C -0.006 4.006 14 C -0.126 4.126 15 C -0.139 4.139 16 C 0.028 3.972 17 C -0.574 4.574 18 H 0.069 0.931 19 C -0.189 4.189 20 N -0.557 5.557 21 Si 0.778 3.222 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.138 4.138 26 C -0.143 4.143 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.180 0.820 31 H 0.178 0.822 32 H 0.180 0.820 33 H 0.121 0.879 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.031 0.969 41 H 0.166 0.834 42 H 0.044 0.956 43 H 0.066 0.934 44 H 0.056 0.944 45 H 0.038 0.962 46 H 0.074 0.926 47 H 0.012 0.988 48 H 0.068 0.932 49 H 0.062 0.938 50 H 0.070 0.930 51 H 0.094 0.906 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.286 25.150 5.194 27.665 hybrid contribution 1.336 -0.238 0.640 1.500 sum -8.950 24.912 5.834 27.106 Atomic orbital electron populations 1.21373 0.88670 1.04747 1.03746 1.20930 0.98958 0.92921 1.00818 1.21878 0.94247 0.98858 0.95758 1.22423 0.95879 0.99738 1.01194 1.23088 1.01052 0.88157 0.96305 1.67464 1.08932 1.33015 1.12984 1.21273 0.89440 0.95231 0.95885 1.19421 0.94334 0.88877 0.98106 1.22452 0.98708 1.04951 0.95827 1.21879 1.00065 1.02613 0.94058 1.21633 0.94861 0.88133 0.98787 1.60514 1.14113 1.01234 1.55249 1.21297 0.93481 0.90514 0.95285 1.21383 0.97943 0.96465 0.96806 1.21403 0.96957 0.94572 1.00921 1.18608 0.93660 0.92582 0.92318 1.21624 1.26391 1.15862 0.93547 0.93085 1.25773 0.98419 0.99598 0.95062 1.70034 1.43961 1.42417 0.99265 0.85705 0.79302 0.79992 0.77214 1.19489 1.20980 1.19819 1.21464 0.97618 0.96727 0.97990 1.21607 0.97899 0.94373 1.00385 0.89255 0.88993 0.89830 0.81962 0.82187 0.82018 0.87873 0.90701 0.93683 0.94825 0.90494 0.90528 0.93182 0.96895 0.83397 0.95605 0.93418 0.94441 0.96244 0.92584 0.98779 0.93174 0.93830 0.93043 0.90619 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 7.69 71.24 0.55 -0.77 16 2 C -0.13 -2.26 5.60 -19.77 -0.11 -2.37 16 3 C -0.08 -1.14 9.87 22.47 0.22 -0.92 16 4 C -0.17 -2.60 10.11 22.36 0.23 -2.37 16 5 C 0.07 1.48 11.18 84.69 0.95 2.42 16 6 N -0.52 -13.86 9.01 -183.89 -1.66 -15.52 16 7 C 0.12 2.76 5.58 42.54 0.24 3.00 16 8 C -0.01 -0.14 0.57 -52.93 -0.03 -0.17 16 9 C -0.16 -2.69 7.64 71.98 0.55 -2.14 16 10 C -0.13 -2.72 7.78 71.98 0.56 -2.16 16 11 C 0.10 2.77 3.64 86.30 0.31 3.09 16 12 N -0.68 -19.67 5.80 -491.55 -2.85 -22.52 16 13 C 0.10 3.70 2.49 44.92 0.11 3.81 16 14 C -0.09 -3.75 5.43 30.60 0.17 -3.58 16 15 C -0.10 -5.10 4.98 30.59 0.15 -4.95 16 16 C 0.05 2.45 2.10 -11.54 -0.02 2.43 16 17 C -0.54 -30.83 8.56 25.60 0.22 -30.61 16 18 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 19 C 0.01 0.56 5.30 84.66 0.45 1.01 16 20 N -0.92 -55.31 11.32 21.45 0.24 -55.06 16 21 Si 0.95 45.19 29.54 68.60 2.03 47.21 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 25 C -0.10 -4.24 5.14 30.59 0.16 -4.08 16 26 C -0.10 -3.62 5.19 30.60 0.16 -3.46 16 27 H 0.09 0.70 7.32 -2.39 -0.02 0.68 16 28 H 0.09 0.98 3.42 -2.39 -0.01 0.97 16 29 H 0.08 0.57 8.12 -2.39 -0.02 0.55 16 30 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 31 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 32 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 33 H 0.10 1.22 3.70 -2.39 -0.01 1.21 16 34 H 0.07 1.16 6.57 -2.39 -0.02 1.14 16 35 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.03 0.87 8.07 -2.39 -0.02 0.85 16 37 H 0.08 1.57 7.97 -2.38 -0.02 1.55 16 38 H 0.08 1.26 5.33 -2.39 -0.01 1.24 16 39 H 0.05 1.75 7.23 -2.39 -0.02 1.74 16 40 H 0.01 0.41 8.05 -2.39 -0.02 0.39 16 41 H 0.35 8.39 6.38 -89.69 -0.57 7.82 16 42 H 0.03 0.98 7.80 -2.39 -0.02 0.96 16 43 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 44 H 0.04 1.58 7.45 -2.39 -0.02 1.56 16 45 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 46 H 0.06 3.24 6.07 -2.38 -0.01 3.23 16 47 H -0.01 -0.35 8.14 -2.38 -0.02 -0.36 16 48 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 49 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 51 H 0.08 2.13 8.12 -2.39 -0.02 2.11 16 52 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -68.89 384.68 2.94 -65.96 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.32 Total: 21.75 kcal Atomic # 6 Polarization: -46.67 SS G_CDS: 4.85 Total: -41.82 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -4.27 Total: -93.10 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -68.89 2.94 -65.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334776.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.089 kcal (2) G-P(sol) polarization free energy of solvation -68.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds