Wall clock time and date at job start Tue Mar 31 2020 11:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46991 * 2 1 4 4 N 1.46896 * 109.46820 * 186.60944 * 3 2 1 5 5 C 1.46901 * 111.00007 * 291.08278 * 4 3 2 6 6 C 1.53005 * 109.46842 * 87.67544 * 5 4 3 7 7 C 1.50701 * 109.47138 * 177.85896 * 6 5 4 8 8 C 1.38228 * 119.61443 * 125.02452 * 7 6 5 9 9 C 1.38626 * 119.15834 * 179.74755 * 8 7 6 10 10 C 1.38678 * 118.41826 * 0.47548 * 9 8 7 11 11 C 1.38181 * 119.16578 * 359.50160 * 10 9 8 12 12 N 1.31855 * 119.61741 * 305.00232 * 7 6 5 13 13 C 1.46905 * 110.99942 * 167.13536 * 4 3 2 14 14 C 1.53001 * 109.47029 * 54.03584 * 13 4 3 15 15 C 1.53005 * 109.46883 * 180.02562 * 14 13 4 16 16 C 1.52992 * 109.47528 * 59.99835 * 15 14 13 17 17 C 1.50695 * 109.47339 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99768 * 120.00195 * 17 16 15 19 19 C 1.37878 * 120.00118 * 299.99970 * 17 16 15 20 20 N 1.31512 * 119.99834 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99934 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47164 * 90.00026 * 21 19 17 23 23 H 1.48500 * 109.47333 * 210.00344 * 21 19 17 24 24 H 1.48506 * 109.47242 * 330.00316 * 21 19 17 25 25 C 1.52999 * 109.47146 * 300.00372 * 16 15 14 26 26 C 1.52994 * 109.47484 * 59.99626 * 25 16 15 27 27 H 1.09001 * 109.46919 * 299.99182 * 1 2 3 28 28 H 1.08998 * 109.47213 * 60.00060 * 1 2 3 29 29 H 1.09007 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46788 * 239.99878 * 2 1 3 31 31 H 1.08998 * 109.47319 * 120.00486 * 2 1 3 32 32 H 1.08996 * 109.47173 * 66.60760 * 3 2 1 33 33 H 1.09000 * 109.46933 * 306.60749 * 3 2 1 34 34 H 1.08997 * 109.47438 * 327.68206 * 5 4 3 35 35 H 1.08997 * 109.47539 * 207.67398 * 5 4 3 36 36 H 1.09004 * 109.46986 * 57.85826 * 6 5 4 37 37 H 1.08999 * 109.47206 * 297.86329 * 6 5 4 38 38 H 1.07994 * 120.42074 * 359.95292 * 8 7 6 39 39 H 1.07997 * 120.79396 * 180.22845 * 9 8 7 40 40 H 1.08000 * 120.41617 * 179.78489 * 10 9 8 41 41 H 1.08001 * 119.61725 * 180.25673 * 11 10 9 42 42 H 1.08994 * 109.47505 * 174.03620 * 13 4 3 43 43 H 1.09001 * 109.47368 * 299.99775 * 14 13 4 44 44 H 1.09000 * 109.47150 * 60.00180 * 14 13 4 45 45 H 1.08999 * 109.46908 * 299.99406 * 15 14 13 46 46 H 1.09001 * 109.46702 * 180.02562 * 15 14 13 47 47 H 1.09007 * 109.47140 * 59.99682 * 16 15 14 48 48 H 0.96998 * 119.99909 * 179.97438 * 20 19 17 49 49 H 1.09004 * 109.47186 * 299.99339 * 25 16 15 50 50 H 1.09000 * 109.47123 * 179.97438 * 25 16 15 51 51 H 1.08999 * 109.47436 * 179.97438 * 26 25 16 52 52 H 1.09007 * 109.47190 * 60.00453 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5003 1.4455 -0.1594 5 6 4.1615 0.9045 1.0357 6 6 4.2797 -0.6157 0.9090 7 6 5.0047 -1.1650 2.1105 8 6 4.4142 -2.1578 2.8696 9 6 5.0918 -2.6600 3.9697 10 6 6.3394 -2.1355 4.2724 11 6 6.8665 -1.1441 3.4670 12 7 6.1951 -0.6934 2.4251 13 6 3.9933 2.7944 -0.4686 14 6 3.4956 3.7754 0.5948 15 6 4.0086 5.1804 0.2724 16 6 3.4894 5.6103 -1.1010 17 6 3.9942 6.9943 -1.4182 18 1 4.6089 7.1581 -2.2910 19 6 3.6713 8.0516 -0.5942 20 7 2.9232 7.8521 0.4688 21 14 4.2976 9.7671 -0.9871 22 1 3.3156 10.4659 -1.8545 23 1 4.4751 10.5302 0.2744 24 1 5.6002 9.6688 -1.6936 25 6 3.9871 4.6292 -2.1644 26 6 3.4741 3.2243 -1.8421 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.7765 1.9210 0.9432 33 1 1.5833 1.9893 -0.8250 34 1 3.5729 1.1507 1.9194 35 1 5.1564 1.3398 1.1289 36 1 4.8358 -0.8627 0.0046 37 1 3.2833 -1.0542 0.8539 38 1 3.4387 -2.5398 2.6070 39 1 4.6568 -3.4384 4.5790 40 1 6.8940 -2.5005 5.1241 41 1 7.8393 -0.7333 3.6935 42 1 5.0832 2.7898 -0.4770 43 1 2.4057 3.7801 0.6032 44 1 3.8652 3.4690 1.5733 45 1 5.0986 5.1761 0.2638 46 1 3.6544 5.8793 1.0302 47 1 2.3994 5.6146 -1.0924 48 1 2.6963 8.5958 1.0487 49 1 5.0771 4.6249 -2.1731 50 1 3.6168 4.9352 -3.1428 51 1 3.8282 2.5255 -2.5999 52 1 2.3841 3.2286 -1.8335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173338144.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:31 Heat of formation + Delta-G solvation = 13.817306 kcal Electronic energy + Delta-G solvation = -27038.993605 eV Core-core repulsion = 23616.224805 eV Total energy + Delta-G solvation = -3422.768800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.39477 -39.08666 -36.21598 -33.61685 -33.23912 -32.49511 -31.88900 -29.63799 -29.50061 -27.88093 -25.87814 -24.47961 -23.68155 -22.96199 -21.80041 -21.33743 -20.92380 -19.75520 -18.35819 -17.00210 -16.45558 -16.27356 -15.75054 -15.58311 -15.22787 -14.88193 -14.50251 -14.15138 -13.63907 -13.45533 -13.39635 -13.21804 -13.06987 -12.95847 -12.71240 -12.28495 -12.20502 -12.07410 -11.69995 -11.61068 -11.38852 -11.27696 -11.06531 -10.90125 -10.78253 -10.59595 -10.35513 -10.23304 -10.18780 -10.05554 -9.91471 -9.84195 -9.51554 -9.25829 -9.10424 -8.91985 -8.60237 -8.26924 -7.82024 -5.92287 -3.98178 0.93307 1.09983 3.33488 3.40176 3.43768 3.61960 4.03937 4.25715 4.48599 4.60718 4.67961 4.86300 4.93177 4.99707 5.14241 5.19047 5.35597 5.36555 5.38124 5.45111 5.52409 5.55379 5.62419 5.66422 5.76806 5.81285 5.90761 5.95299 5.97772 6.02004 6.06394 6.12546 6.16327 6.24909 6.29855 6.38089 6.40017 6.49988 6.51776 6.56093 6.71354 6.74354 6.87598 7.01544 7.18865 7.30992 7.45608 7.55185 7.62310 7.81412 7.87967 8.09266 8.22647 8.54524 9.06333 9.66160 11.13010 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014936 B = 0.002968 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.210884 B = 9430.905071 C =10547.921553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.050 3.950 4 N -0.536 5.536 5 C 0.067 3.933 6 C -0.077 4.077 7 C 0.138 3.862 8 C -0.174 4.174 9 C -0.075 4.075 10 C -0.186 4.186 11 C 0.103 3.897 12 N -0.479 5.479 13 C 0.090 3.910 14 C -0.144 4.144 15 C -0.105 4.105 16 C 0.050 3.950 17 C -0.511 4.511 18 H 0.053 0.947 19 C 0.060 3.940 20 N -0.891 5.891 21 Si 0.888 3.112 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 C -0.108 4.108 26 C -0.104 4.104 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.078 0.922 34 H 0.034 0.966 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.154 0.846 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.038 0.962 45 H 0.032 0.968 46 H 0.089 0.911 47 H 0.022 0.978 48 H 0.258 0.742 49 H 0.047 0.953 50 H 0.047 0.953 51 H 0.052 0.948 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.719 -22.363 5.731 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.078 4.078 4 N -0.258 5.258 5 C -0.062 4.062 6 C -0.115 4.115 7 C 0.000 4.000 8 C -0.194 4.194 9 C -0.101 4.101 10 C -0.206 4.206 11 C -0.054 4.054 12 N -0.188 5.188 13 C -0.017 4.017 14 C -0.183 4.183 15 C -0.143 4.143 16 C 0.031 3.969 17 C -0.549 4.549 18 H 0.072 0.928 19 C -0.141 4.141 20 N -0.531 5.531 21 Si 0.716 3.284 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.200 1.200 25 C -0.146 4.146 26 C -0.142 4.142 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.172 0.828 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.107 0.893 47 H 0.040 0.960 48 H 0.068 0.932 49 H 0.066 0.934 50 H 0.066 0.934 51 H 0.070 0.930 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.131 -21.912 4.957 22.494 hybrid contribution -0.198 0.815 1.312 1.557 sum 0.934 -21.097 6.269 22.029 Atomic orbital electron populations 1.21761 0.96072 1.01221 1.01942 1.21817 0.95081 0.97323 1.02149 1.22261 0.88377 0.96237 1.00927 1.62190 1.04667 1.23541 1.35407 1.21942 0.99822 0.93222 0.91205 1.20982 0.99859 0.96503 0.94125 1.21470 0.90666 0.92052 0.95779 1.22006 1.01548 0.99050 0.96764 1.21570 0.94382 0.98143 0.96001 1.22116 0.97157 0.99495 1.01785 1.22804 0.99232 0.93194 0.90200 1.67552 1.07646 1.26860 1.16751 1.21820 0.99105 0.85157 0.95638 1.22255 1.00527 0.98622 0.96895 1.21542 0.98109 0.92570 1.02114 1.18635 0.95934 0.92279 0.90018 1.21259 1.31515 0.92605 1.09515 0.92834 1.24969 0.95168 0.98769 0.95158 1.69883 1.37561 1.31074 1.14545 0.86664 0.79270 0.84831 0.77638 1.20805 1.21353 1.19978 1.21619 0.99663 0.93511 0.99833 1.21581 1.00048 0.97436 0.95090 0.92952 0.92595 0.92974 0.91220 0.91796 0.94643 0.90343 0.94745 0.90328 0.89319 0.89210 0.84942 0.85062 0.85041 0.82839 0.90606 0.92786 0.94352 0.94936 0.89291 0.95962 0.93202 0.93438 0.93447 0.92953 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.11 16 2 C -0.13 -1.36 4.83 -26.73 -0.13 -1.49 16 3 C 0.05 0.69 3.75 -3.83 -0.01 0.67 16 4 N -0.54 -7.88 4.37 -226.65 -0.99 -8.87 16 5 C 0.07 0.92 3.92 -3.82 -0.01 0.91 16 6 C -0.08 -0.88 5.49 -27.88 -0.15 -1.03 16 7 C 0.14 1.61 6.18 -82.59 -0.51 1.10 16 8 C -0.17 -1.63 9.71 -39.44 -0.38 -2.02 16 9 C -0.07 -0.61 10.18 -39.28 -0.40 -1.01 16 10 C -0.19 -1.54 10.11 -39.44 -0.40 -1.94 16 11 C 0.10 1.05 11.18 -17.55 -0.20 0.85 16 12 N -0.48 -6.13 9.84 -9.47 -0.09 -6.22 16 13 C 0.09 1.57 2.11 -67.71 -0.14 1.43 16 14 C -0.14 -2.83 4.53 -26.73 -0.12 -2.95 16 15 C -0.10 -2.49 4.98 -26.73 -0.13 -2.63 16 16 C 0.05 1.24 2.10 -91.78 -0.19 1.05 16 17 C -0.51 -14.18 8.56 -34.44 -0.29 -14.47 16 18 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 20 N -0.89 -25.74 11.32 55.43 0.63 -25.12 16 21 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 C -0.11 -2.27 5.14 -26.73 -0.14 -2.41 16 26 C -0.10 -1.86 5.16 -26.73 -0.14 -1.99 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.64 5.41 -51.93 -0.28 0.36 16 32 H 0.04 0.53 6.71 -51.93 -0.35 0.18 16 33 H 0.08 1.16 6.00 -51.93 -0.31 0.85 16 34 H 0.03 0.50 7.57 -51.93 -0.39 0.11 16 35 H 0.08 1.22 7.28 -51.93 -0.38 0.85 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.09 0.89 4.26 -51.93 -0.22 0.67 16 38 H 0.13 0.96 7.95 -52.49 -0.42 0.54 16 39 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 40 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 42 H 0.08 1.38 7.79 -51.93 -0.40 0.98 16 43 H 0.05 1.09 6.62 -51.93 -0.34 0.74 16 44 H 0.04 0.73 7.49 -51.93 -0.39 0.34 16 45 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 47 H 0.02 0.61 8.14 -51.92 -0.42 0.19 16 48 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 49 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 51 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 52 H 0.05 0.97 6.32 -51.92 -0.33 0.64 16 LS Contribution 390.64 15.07 5.89 5.89 Total: -1.00 -29.60 390.64 -11.84 -41.45 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -9.17 Total: 1.78 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -3.09 Total: -25.47 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: -0.46 Total: -40.20 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.60 -11.84 -41.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338144.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.264 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds