Wall clock time and date at job start Tue Mar 31 2020 11:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46991 * 2 1 4 4 N 1.46896 * 109.46820 * 186.60944 * 3 2 1 5 5 C 1.46901 * 111.00007 * 291.08278 * 4 3 2 6 6 C 1.53005 * 109.46842 * 87.67544 * 5 4 3 7 7 C 1.50701 * 109.47138 * 177.85896 * 6 5 4 8 8 C 1.38228 * 119.61443 * 125.02452 * 7 6 5 9 9 C 1.38626 * 119.15834 * 179.74755 * 8 7 6 10 10 C 1.38678 * 118.41826 * 0.47548 * 9 8 7 11 11 C 1.38181 * 119.16578 * 359.50160 * 10 9 8 12 12 N 1.31855 * 119.61741 * 305.00232 * 7 6 5 13 13 C 1.46905 * 110.99942 * 167.13536 * 4 3 2 14 14 C 1.53001 * 109.47029 * 54.03584 * 13 4 3 15 15 C 1.53005 * 109.46883 * 180.02562 * 14 13 4 16 16 C 1.52992 * 109.47528 * 59.99835 * 15 14 13 17 17 C 1.50695 * 109.47339 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99768 * 120.00195 * 17 16 15 19 19 C 1.37878 * 120.00118 * 299.99970 * 17 16 15 20 20 N 1.31512 * 119.99834 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99934 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47164 * 90.00026 * 21 19 17 23 23 H 1.48500 * 109.47333 * 210.00344 * 21 19 17 24 24 H 1.48506 * 109.47242 * 330.00316 * 21 19 17 25 25 C 1.52999 * 109.47146 * 300.00372 * 16 15 14 26 26 C 1.52994 * 109.47484 * 59.99626 * 25 16 15 27 27 H 1.09001 * 109.46919 * 299.99182 * 1 2 3 28 28 H 1.08998 * 109.47213 * 60.00060 * 1 2 3 29 29 H 1.09007 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46788 * 239.99878 * 2 1 3 31 31 H 1.08998 * 109.47319 * 120.00486 * 2 1 3 32 32 H 1.08996 * 109.47173 * 66.60760 * 3 2 1 33 33 H 1.09000 * 109.46933 * 306.60749 * 3 2 1 34 34 H 1.08997 * 109.47438 * 327.68206 * 5 4 3 35 35 H 1.08997 * 109.47539 * 207.67398 * 5 4 3 36 36 H 1.09004 * 109.46986 * 57.85826 * 6 5 4 37 37 H 1.08999 * 109.47206 * 297.86329 * 6 5 4 38 38 H 1.07994 * 120.42074 * 359.95292 * 8 7 6 39 39 H 1.07997 * 120.79396 * 180.22845 * 9 8 7 40 40 H 1.08000 * 120.41617 * 179.78489 * 10 9 8 41 41 H 1.08001 * 119.61725 * 180.25673 * 11 10 9 42 42 H 1.08994 * 109.47505 * 174.03620 * 13 4 3 43 43 H 1.09001 * 109.47368 * 299.99775 * 14 13 4 44 44 H 1.09000 * 109.47150 * 60.00180 * 14 13 4 45 45 H 1.08999 * 109.46908 * 299.99406 * 15 14 13 46 46 H 1.09001 * 109.46702 * 180.02562 * 15 14 13 47 47 H 1.09007 * 109.47140 * 59.99682 * 16 15 14 48 48 H 0.96998 * 119.99909 * 179.97438 * 20 19 17 49 49 H 1.09004 * 109.47186 * 299.99339 * 25 16 15 50 50 H 1.09000 * 109.47123 * 179.97438 * 25 16 15 51 51 H 1.08999 * 109.47436 * 179.97438 * 26 25 16 52 52 H 1.09007 * 109.47190 * 60.00453 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5003 1.4455 -0.1594 5 6 4.1615 0.9045 1.0357 6 6 4.2797 -0.6157 0.9090 7 6 5.0047 -1.1650 2.1105 8 6 4.4142 -2.1578 2.8696 9 6 5.0918 -2.6600 3.9697 10 6 6.3394 -2.1355 4.2724 11 6 6.8665 -1.1441 3.4670 12 7 6.1951 -0.6934 2.4251 13 6 3.9933 2.7944 -0.4686 14 6 3.4956 3.7754 0.5948 15 6 4.0086 5.1804 0.2724 16 6 3.4894 5.6103 -1.1010 17 6 3.9942 6.9943 -1.4182 18 1 4.6089 7.1581 -2.2910 19 6 3.6713 8.0516 -0.5942 20 7 2.9232 7.8521 0.4688 21 14 4.2976 9.7671 -0.9871 22 1 3.3156 10.4659 -1.8545 23 1 4.4751 10.5302 0.2744 24 1 5.6002 9.6688 -1.6936 25 6 3.9871 4.6292 -2.1644 26 6 3.4741 3.2243 -1.8421 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.7765 1.9210 0.9432 33 1 1.5833 1.9893 -0.8250 34 1 3.5729 1.1507 1.9194 35 1 5.1564 1.3398 1.1289 36 1 4.8358 -0.8627 0.0046 37 1 3.2833 -1.0542 0.8539 38 1 3.4387 -2.5398 2.6070 39 1 4.6568 -3.4384 4.5790 40 1 6.8940 -2.5005 5.1241 41 1 7.8393 -0.7333 3.6935 42 1 5.0832 2.7898 -0.4770 43 1 2.4057 3.7801 0.6032 44 1 3.8652 3.4690 1.5733 45 1 5.0986 5.1761 0.2638 46 1 3.6544 5.8793 1.0302 47 1 2.3994 5.6146 -1.0924 48 1 2.6963 8.5958 1.0487 49 1 5.0771 4.6249 -2.1731 50 1 3.6168 4.9352 -3.1428 51 1 3.8282 2.5255 -2.5999 52 1 2.3841 3.2286 -1.8335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173338144.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:30 Heat of formation + Delta-G solvation = -1.108378 kcal Electronic energy + Delta-G solvation = -27039.640831 eV Core-core repulsion = 23616.224805 eV Total energy + Delta-G solvation = -3423.416026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.17961 -40.44363 -37.72744 -34.90228 -34.43182 -33.41052 -33.17493 -31.37053 -30.80479 -29.18757 -27.09137 -26.08905 -24.46191 -24.07439 -23.34356 -22.54867 -21.95893 -21.31949 -19.95894 -18.39844 -17.72525 -17.24713 -16.89567 -16.61517 -16.45301 -16.14752 -15.95210 -15.23830 -15.02070 -14.87577 -14.55955 -14.29732 -14.23250 -14.03909 -14.00158 -13.79018 -13.34925 -13.12864 -12.99246 -12.98430 -12.91034 -12.68490 -12.53313 -12.41851 -12.24836 -12.00628 -11.82963 -11.78465 -11.65142 -11.60569 -11.17486 -11.01681 -10.77546 -10.74660 -10.56744 -10.38482 -10.26152 -9.83956 -9.16400 -8.07274 -6.21589 0.22539 0.42838 1.39401 1.40071 1.50397 2.42896 2.80815 2.99760 3.18513 3.48752 3.81361 3.92513 4.00389 4.07111 4.09669 4.19338 4.25265 4.30074 4.31600 4.42413 4.45505 4.52599 4.57011 4.64667 4.66541 4.71290 4.74896 4.79215 4.81531 4.86567 4.90458 4.93805 5.00028 5.06482 5.14054 5.16627 5.23622 5.27696 5.31961 5.33915 5.36465 5.37710 5.44502 5.45313 5.52672 5.60605 5.67605 5.86863 6.03334 6.18470 6.19830 6.27419 6.42345 6.91440 7.14586 7.46329 8.96159 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014936 B = 0.002968 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.210884 B = 9430.905071 C =10547.921553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C 0.049 3.951 4 N -0.526 5.526 5 C 0.073 3.927 6 C -0.064 4.064 7 C 0.111 3.889 8 C -0.175 4.175 9 C -0.077 4.077 10 C -0.180 4.180 11 C 0.080 3.920 12 N -0.518 5.518 13 C 0.099 3.901 14 C -0.130 4.130 15 C -0.096 4.096 16 C 0.048 3.952 17 C -0.534 4.534 18 H 0.051 0.949 19 C 0.010 3.990 20 N -0.918 5.918 21 Si 0.952 3.048 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.269 1.269 25 C -0.101 4.101 26 C -0.093 4.093 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.021 0.979 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.155 0.845 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.166 0.834 42 H 0.069 0.931 43 H 0.047 0.953 44 H 0.041 0.959 45 H 0.023 0.977 46 H 0.053 0.947 47 H -0.009 1.009 48 H 0.259 0.741 49 H 0.046 0.954 50 H 0.049 0.951 51 H 0.075 0.925 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.629 -24.789 6.004 25.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.079 4.079 4 N -0.248 5.248 5 C -0.055 4.055 6 C -0.102 4.102 7 C -0.026 4.026 8 C -0.195 4.195 9 C -0.102 4.102 10 C -0.199 4.199 11 C -0.076 4.076 12 N -0.228 5.228 13 C -0.009 4.009 14 C -0.169 4.169 15 C -0.135 4.135 16 C 0.030 3.970 17 C -0.572 4.572 18 H 0.069 0.931 19 C -0.188 4.188 20 N -0.558 5.558 21 Si 0.777 3.223 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.193 1.193 25 C -0.139 4.139 26 C -0.131 4.131 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.039 0.961 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.127 0.873 38 H 0.173 0.827 39 H 0.181 0.819 40 H 0.178 0.822 41 H 0.184 0.816 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.042 0.958 46 H 0.072 0.928 47 H 0.009 0.991 48 H 0.068 0.932 49 H 0.065 0.935 50 H 0.068 0.932 51 H 0.093 0.907 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.042 -24.354 5.223 24.930 hybrid contribution -0.159 1.566 1.302 2.043 sum 0.883 -22.788 6.525 23.721 Atomic orbital electron populations 1.21752 0.95088 1.02427 1.01545 1.21754 0.95827 0.94955 1.02959 1.22332 0.87471 0.98395 0.99717 1.62271 1.05412 1.21174 1.35963 1.21882 0.98214 0.95106 0.90315 1.20848 1.00855 0.94259 0.94235 1.21538 0.90949 0.93559 0.96577 1.22277 1.02418 0.98169 0.96607 1.22011 0.94139 0.98383 0.95715 1.22464 0.97377 0.98235 1.01847 1.23159 0.99953 0.94216 0.90306 1.67468 1.08703 1.28299 1.18294 1.21628 0.98665 0.86097 0.94555 1.22086 0.99874 0.96842 0.98065 1.21332 0.97296 0.94283 1.00603 1.18593 0.93918 0.92628 0.91864 1.21651 1.31687 0.94288 1.09559 0.93072 1.25756 0.95378 1.02645 0.95011 1.70031 1.38402 1.32065 1.15267 0.85655 0.78934 0.80143 0.77533 1.20084 1.20999 1.19311 1.21490 0.99495 0.94444 0.98497 1.21467 0.99987 0.95810 0.95853 0.93371 0.93048 0.90945 0.90604 0.90665 0.96066 0.91363 0.95588 0.92453 0.90051 0.87335 0.82697 0.81862 0.82177 0.81645 0.91241 0.93463 0.94065 0.95828 0.92798 0.99088 0.93227 0.93514 0.93248 0.90669 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.91 71.98 0.71 -1.89 16 2 C -0.12 -2.29 4.83 30.60 0.15 -2.14 16 3 C 0.05 1.30 3.75 86.30 0.32 1.63 16 4 N -0.53 -15.19 4.37 -870.99 -3.81 -19.00 16 5 C 0.07 2.02 3.92 86.30 0.34 2.36 16 6 C -0.06 -1.40 5.49 29.85 0.16 -1.24 16 7 C 0.11 2.48 6.18 42.55 0.26 2.74 16 8 C -0.18 -2.87 9.71 22.36 0.22 -2.65 16 9 C -0.08 -1.02 10.18 22.47 0.23 -0.79 16 10 C -0.18 -2.56 10.11 22.36 0.23 -2.33 16 11 C 0.08 1.58 11.18 84.67 0.95 2.52 16 12 N -0.52 -13.18 9.84 -183.88 -1.81 -14.99 16 13 C 0.10 3.46 2.11 44.92 0.09 3.55 16 14 C -0.13 -5.26 4.53 30.60 0.14 -5.13 16 15 C -0.10 -4.80 4.98 30.59 0.15 -4.64 16 16 C 0.05 2.50 2.10 -11.54 -0.02 2.48 16 17 C -0.53 -30.41 8.56 25.60 0.22 -30.19 16 18 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 19 C 0.01 0.59 5.30 84.66 0.45 1.03 16 20 N -0.92 -54.69 11.32 21.45 0.24 -54.44 16 21 Si 0.95 44.88 29.54 68.60 2.03 46.91 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 24 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 25 C -0.10 -4.29 5.14 30.59 0.16 -4.14 16 26 C -0.09 -3.30 5.16 30.59 0.16 -3.14 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 1.31 5.41 -2.39 -0.01 1.29 16 32 H 0.02 0.63 6.71 -2.39 -0.02 0.61 16 33 H 0.07 1.98 6.00 -2.39 -0.01 1.96 16 34 H 0.03 0.75 7.57 -2.39 -0.02 0.74 16 35 H 0.06 1.83 7.28 -2.39 -0.02 1.82 16 36 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.11 1.89 4.26 -2.39 -0.01 1.88 16 38 H 0.16 1.71 7.95 -2.91 -0.02 1.69 16 39 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 40 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 41 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 42 H 0.07 2.55 7.79 -2.39 -0.02 2.53 16 43 H 0.05 1.97 6.62 -2.39 -0.02 1.96 16 44 H 0.04 1.62 7.49 -2.39 -0.02 1.61 16 45 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.05 3.05 6.07 -2.39 -0.01 3.04 16 47 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 48 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 49 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 50 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 51 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 52 H 0.05 1.94 6.32 -2.38 -0.02 1.92 16 Total: -1.00 -66.36 390.64 2.43 -63.92 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.87 Total: 19.56 kcal Atomic # 6 Polarization: -46.87 SS G_CDS: 4.91 Total: -41.96 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -5.37 Total: -88.43 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -66.36 2.43 -63.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338144.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.815 kcal (2) G-P(sol) polarization free energy of solvation -66.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds