Wall clock time and date at job start Tue Mar 31 2020 11:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47170 * 2 1 4 4 H 1.09000 * 109.46791 * 305.64571 * 3 2 1 5 5 C 1.50697 * 109.46900 * 185.64510 * 3 2 1 6 6 H 1.07996 * 119.99960 * 239.99172 * 5 3 2 7 7 C 1.37875 * 120.00090 * 60.00185 * 5 3 2 8 8 N 1.31516 * 119.99904 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00210 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46752 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47058 * 119.99616 * 9 7 5 12 12 H 1.48499 * 109.46868 * 240.00152 * 9 7 5 13 13 N 1.46907 * 109.47063 * 65.64208 * 3 2 1 14 14 C 1.46899 * 110.99871 * 209.40457 * 13 3 2 15 15 H 1.09004 * 109.53423 * 320.75213 * 14 13 3 16 16 C 1.53116 * 109.49466 * 80.85569 * 14 13 3 17 17 C 1.53119 * 109.15347 * 177.60332 * 16 14 13 18 18 C 1.53028 * 109.27892 * 302.34122 * 17 16 14 19 19 H 1.08999 * 109.46144 * 179.19008 * 18 17 16 20 20 C 1.53004 * 109.45338 * 299.16726 * 18 17 16 21 21 N 1.46856 * 109.52576 * 59.17723 * 18 17 16 22 22 C 1.46894 * 110.99916 * 174.15996 * 21 18 17 23 23 C 1.50697 * 109.47350 * 307.42787 * 22 21 18 24 24 C 1.38238 * 119.99932 * 275.94065 * 23 22 21 25 25 C 1.38239 * 119.99487 * 179.78794 * 24 23 22 26 26 C 1.38231 * 120.00102 * 0.46356 * 25 24 23 27 27 C 1.38230 * 120.00389 * 359.77294 * 26 25 24 28 28 C 1.38239 * 119.99928 * 0.02562 * 27 26 25 29 29 C 1.46847 * 111.19560 * 298.26077 * 21 18 17 30 30 H 1.08997 * 109.46995 * 184.87328 * 1 2 3 31 31 H 1.09003 * 109.46772 * 304.87340 * 1 2 3 32 32 H 1.08998 * 109.47116 * 64.87234 * 1 2 3 33 33 H 1.08996 * 109.47180 * 239.99874 * 2 1 3 34 34 H 1.08999 * 109.47049 * 119.99384 * 2 1 3 35 35 H 0.97000 * 119.99939 * 179.97438 * 8 7 5 36 36 H 1.00902 * 111.00245 * 333.36253 * 13 3 2 37 37 H 1.08999 * 109.53362 * 57.69545 * 16 14 13 38 38 H 1.09006 * 109.52064 * 297.50523 * 16 14 13 39 39 H 1.08995 * 109.50251 * 182.39288 * 17 16 14 40 40 H 1.09010 * 109.50028 * 62.27874 * 17 16 14 41 41 H 1.09003 * 109.46756 * 184.49610 * 20 18 17 42 42 H 1.08993 * 109.46647 * 304.49160 * 20 18 17 43 43 H 1.08996 * 109.47165 * 64.50035 * 20 18 17 44 44 H 1.09003 * 109.47470 * 67.43489 * 22 21 18 45 45 H 1.09003 * 109.47289 * 187.42718 * 22 21 18 46 46 H 1.07995 * 120.00067 * 359.97438 * 24 23 22 47 47 H 1.08003 * 119.99486 * 180.25435 * 25 24 23 48 48 H 1.08006 * 119.99589 * 179.78932 * 26 25 24 49 49 H 1.07994 * 120.00571 * 179.97438 * 27 26 25 50 50 H 1.07998 * 120.00326 * 179.97438 * 28 27 26 51 51 H 1.08999 * 109.46161 * 181.75769 * 29 21 18 52 52 H 1.09000 * 109.46025 * 301.73303 * 29 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.5965 1.9847 -0.8351 5 6 3.5405 1.4448 -0.1398 6 1 4.1540 1.8865 0.6315 7 6 4.1301 0.8830 -1.2523 8 7 3.3830 0.3448 -2.1914 9 14 5.9901 0.8864 -1.4259 10 1 6.5964 1.5480 -0.2427 11 1 6.4812 -0.5120 -1.5175 12 1 6.3710 1.6265 -2.6557 13 7 1.6647 2.0946 1.2618 14 6 1.4823 3.5400 1.0734 15 1 2.2447 3.9179 0.3922 16 6 0.0938 3.8075 0.4860 17 6 -0.1111 5.3187 0.3488 18 6 0.0583 5.9780 1.7193 19 1 -0.0727 7.0558 1.6226 20 6 -0.9897 5.4217 2.6854 21 7 1.4022 5.6932 2.2383 22 6 1.6497 6.4242 3.4882 23 6 1.3556 7.8876 3.2811 24 6 2.3201 8.7164 2.7390 25 6 2.0487 10.0579 2.5449 26 6 0.8163 10.5725 2.9018 27 6 -0.1464 9.7447 3.4484 28 6 0.1235 8.4024 3.6386 29 6 1.6054 4.2507 2.4231 30 1 -0.3633 -1.0239 0.0873 31 1 -0.3633 0.5876 0.8432 32 1 -0.3633 0.4364 -0.9304 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 3.7978 -0.0500 -2.9743 36 1 0.8358 1.6736 1.6539 37 1 -0.6676 3.3953 1.1481 38 1 0.0170 3.3389 -0.4952 39 1 -1.1139 5.5171 -0.0292 40 1 0.6264 5.7245 -0.3439 41 1 -0.9215 5.9477 3.6377 42 1 -1.9844 5.5627 2.2629 43 1 -0.8095 4.3585 2.8440 44 1 1.0033 6.0312 4.2731 45 1 2.6924 6.3010 3.7809 46 1 3.2844 8.3152 2.4643 47 1 2.8008 10.7046 2.1176 48 1 0.6056 11.6213 2.7533 49 1 -1.1090 10.1468 3.7276 50 1 -0.6285 7.7557 4.0660 51 1 2.5979 4.0738 2.8375 52 1 0.8514 3.8626 3.1080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180593904.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:26 Heat of formation + Delta-G solvation = 23.251060 kcal Electronic energy + Delta-G solvation = -27594.318805 eV Core-core repulsion = 24171.959083 eV Total energy + Delta-G solvation = -3422.359722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.17921 -38.73446 -36.28737 -33.81478 -32.44691 -31.47052 -30.96943 -30.94171 -28.94243 -27.29976 -26.12218 -25.31453 -22.89873 -22.76387 -22.62327 -21.80599 -20.53312 -19.58183 -18.25425 -16.85355 -16.17968 -16.15635 -15.55570 -15.33172 -14.92973 -14.63048 -14.50487 -14.10069 -13.70468 -13.54276 -13.51218 -13.10957 -12.80412 -12.76246 -12.65753 -12.48817 -12.20974 -12.11361 -11.80789 -11.73554 -11.55849 -11.16106 -11.08107 -10.98451 -10.86584 -10.70221 -10.54698 -10.45695 -10.14522 -9.97019 -9.89051 -9.64703 -9.47769 -9.01629 -8.99011 -8.84779 -8.29783 -8.02903 -7.14375 -5.91600 -3.94891 1.23293 1.31574 3.35151 3.43028 3.48695 3.61775 4.18232 4.50206 4.66894 4.73708 4.88902 4.96192 4.99928 5.09565 5.25196 5.30342 5.36456 5.37795 5.40512 5.50317 5.54649 5.61716 5.64533 5.68706 5.81456 5.92032 5.95998 5.97991 6.05204 6.06845 6.11022 6.17790 6.18021 6.24846 6.35609 6.40503 6.41693 6.43171 6.46445 6.57464 6.72601 6.83987 6.85834 6.90373 7.12199 7.22096 7.30759 7.36307 7.56657 7.82434 7.98579 8.37659 8.46590 8.81607 9.13748 9.69985 11.13712 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016464 B = 0.003339 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.250142 B = 8383.934816 C = 9477.152008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.222 3.778 4 H 0.006 0.994 5 C -0.488 4.488 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.682 5.682 14 C 0.102 3.898 15 H 0.088 0.912 16 C -0.150 4.150 17 C -0.106 4.106 18 C 0.081 3.919 19 H 0.081 0.919 20 C -0.189 4.189 21 N -0.523 5.523 22 C 0.092 3.908 23 C -0.073 4.073 24 C -0.097 4.097 25 C -0.122 4.122 26 C -0.125 4.125 27 C -0.124 4.124 28 C -0.117 4.117 29 C 0.067 3.933 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.042 0.958 33 H 0.099 0.901 34 H 0.039 0.961 35 H 0.258 0.742 36 H 0.315 0.685 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.040 0.960 45 H 0.083 0.917 46 H 0.125 0.875 47 H 0.120 0.880 48 H 0.117 0.883 49 H 0.118 0.882 50 H 0.119 0.881 51 H 0.079 0.921 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.811 15.799 10.443 20.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C 0.114 3.886 4 H 0.024 0.976 5 C -0.527 4.527 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.312 5.312 14 C -0.009 4.009 15 H 0.107 0.893 16 C -0.189 4.189 17 C -0.144 4.144 18 C -0.028 4.028 19 H 0.099 0.901 20 C -0.247 4.247 21 N -0.247 5.247 22 C -0.035 4.035 23 C -0.074 4.074 24 C -0.115 4.115 25 C -0.140 4.140 26 C -0.143 4.143 27 C -0.142 4.142 28 C -0.135 4.135 29 C -0.061 4.061 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.118 0.882 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.133 0.867 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.102 0.898 46 H 0.143 0.857 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.136 0.864 50 H 0.137 0.863 51 H 0.097 0.903 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.762 15.886 10.142 20.383 hybrid contribution -0.571 -0.312 -0.125 0.662 sum -8.332 15.574 10.017 20.306 Atomic orbital electron populations 1.21881 0.99687 0.99329 0.99728 1.21808 0.91154 1.00670 1.03013 1.19124 0.95318 0.89669 0.84463 0.97641 1.21277 0.91372 1.35950 1.04106 0.92018 1.24953 0.97981 0.95777 0.95919 1.69882 1.34497 1.39842 1.09596 0.86516 0.86010 0.77474 0.77858 1.19778 1.21264 1.21297 1.60695 1.38370 1.00908 1.31240 1.21387 0.94985 0.89710 0.94804 0.89345 1.22387 0.99179 0.95673 1.01653 1.21519 1.00932 0.95910 0.96085 1.21695 0.86819 0.99853 0.94420 0.90079 1.22552 0.99991 1.02265 0.99917 1.62165 1.26891 1.08753 1.26887 1.21050 1.01670 0.89356 0.91467 1.19808 0.93873 0.95329 0.98344 1.21094 0.99558 0.93155 0.97736 1.21167 0.97072 0.95568 1.00209 1.21118 0.93963 0.99609 0.99639 1.21081 0.99232 0.93799 1.00114 1.21145 0.96479 0.95402 1.00500 1.22104 1.01075 0.85111 0.97805 0.94554 0.94703 0.93910 0.88245 0.94215 0.93254 0.86723 0.92874 0.91796 0.92376 0.91232 0.93021 0.92461 0.91639 0.94166 0.89839 0.85689 0.86205 0.86445 0.86400 0.86321 0.90294 0.95082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.82 37.16 0.37 -2.49 16 2 C -0.13 -2.98 5.33 -26.73 -0.14 -3.13 16 3 C 0.22 5.40 1.81 -68.86 -0.12 5.27 16 4 H 0.01 0.16 6.84 -51.93 -0.36 -0.20 16 5 C -0.49 -13.41 8.71 -34.44 -0.30 -13.71 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.05 1.48 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.55 11.29 55.43 0.63 -24.92 16 9 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 13 N -0.68 -14.04 6.05 -100.87 -0.61 -14.65 16 14 C 0.10 1.87 2.46 -67.64 -0.17 1.71 16 15 H 0.09 1.92 7.85 -51.93 -0.41 1.52 16 16 C -0.15 -2.42 4.92 -26.61 -0.13 -2.55 16 17 C -0.11 -1.50 5.61 -26.66 -0.15 -1.65 16 18 C 0.08 1.03 2.42 -67.72 -0.16 0.87 16 19 H 0.08 1.05 5.87 -51.93 -0.30 0.75 16 20 C -0.19 -2.16 7.94 37.16 0.29 -1.86 16 21 N -0.52 -7.23 4.70 -228.13 -1.07 -8.30 16 22 C 0.09 1.09 4.80 -4.98 -0.02 1.07 16 23 C -0.07 -0.82 4.17 -104.62 -0.44 -1.26 16 24 C -0.10 -1.07 9.73 -39.58 -0.38 -1.46 16 25 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 26 C -0.13 -1.15 10.05 -39.59 -0.40 -1.55 16 27 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 28 C -0.12 -1.19 7.97 -39.58 -0.32 -1.51 16 29 C 0.07 1.04 4.78 -3.84 -0.02 1.02 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.03 0.60 6.37 -51.93 -0.33 0.27 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 34 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.32 6.00 6.24 -39.29 -0.25 5.76 16 37 H 0.05 0.81 6.63 -51.93 -0.34 0.46 16 38 H 0.06 1.16 7.23 -51.93 -0.38 0.79 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 41 H 0.05 0.54 4.91 -51.93 -0.25 0.28 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.82 4.80 -51.93 -0.25 0.57 16 44 H 0.04 0.45 6.84 -51.93 -0.36 0.10 16 45 H 0.08 0.98 8.12 -51.93 -0.42 0.55 16 46 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 47 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 48 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 49 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 50 H 0.12 1.10 6.22 -52.49 -0.33 0.77 16 51 H 0.08 1.32 8.12 -51.93 -0.42 0.89 16 52 H 0.03 0.46 6.10 -51.93 -0.32 0.15 16 LS Contribution 384.06 15.07 5.79 5.79 Total: -1.00 -28.03 384.06 -12.06 -40.09 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -8.79 Total: 8.36 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -2.98 Total: -22.99 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -1.06 Total: -47.88 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.03 -12.06 -40.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180593904.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.340 kcal (2) G-P(sol) polarization free energy of solvation -28.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds