Wall clock time and date at job start Tue Mar 31 2020 11:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47170 * 2 1 4 4 H 1.09000 * 109.46791 * 305.64571 * 3 2 1 5 5 C 1.50697 * 109.46900 * 185.64510 * 3 2 1 6 6 H 1.07996 * 119.99960 * 239.99172 * 5 3 2 7 7 C 1.37875 * 120.00090 * 60.00185 * 5 3 2 8 8 N 1.31516 * 119.99904 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00210 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46752 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47058 * 119.99616 * 9 7 5 12 12 H 1.48499 * 109.46868 * 240.00152 * 9 7 5 13 13 N 1.46907 * 109.47063 * 65.64208 * 3 2 1 14 14 C 1.46899 * 110.99871 * 209.40457 * 13 3 2 15 15 H 1.09004 * 109.53423 * 320.75213 * 14 13 3 16 16 C 1.53116 * 109.49466 * 80.85569 * 14 13 3 17 17 C 1.53119 * 109.15347 * 177.60332 * 16 14 13 18 18 C 1.53028 * 109.27892 * 302.34122 * 17 16 14 19 19 H 1.08999 * 109.46144 * 179.19008 * 18 17 16 20 20 C 1.53004 * 109.45338 * 299.16726 * 18 17 16 21 21 N 1.46856 * 109.52576 * 59.17723 * 18 17 16 22 22 C 1.46894 * 110.99916 * 174.15996 * 21 18 17 23 23 C 1.50697 * 109.47350 * 307.42787 * 22 21 18 24 24 C 1.38238 * 119.99932 * 275.94065 * 23 22 21 25 25 C 1.38239 * 119.99487 * 179.78794 * 24 23 22 26 26 C 1.38231 * 120.00102 * 0.46356 * 25 24 23 27 27 C 1.38230 * 120.00389 * 359.77294 * 26 25 24 28 28 C 1.38239 * 119.99928 * 0.02562 * 27 26 25 29 29 C 1.46847 * 111.19560 * 298.26077 * 21 18 17 30 30 H 1.08997 * 109.46995 * 184.87328 * 1 2 3 31 31 H 1.09003 * 109.46772 * 304.87340 * 1 2 3 32 32 H 1.08998 * 109.47116 * 64.87234 * 1 2 3 33 33 H 1.08996 * 109.47180 * 239.99874 * 2 1 3 34 34 H 1.08999 * 109.47049 * 119.99384 * 2 1 3 35 35 H 0.97000 * 119.99939 * 179.97438 * 8 7 5 36 36 H 1.00902 * 111.00245 * 333.36253 * 13 3 2 37 37 H 1.08999 * 109.53362 * 57.69545 * 16 14 13 38 38 H 1.09006 * 109.52064 * 297.50523 * 16 14 13 39 39 H 1.08995 * 109.50251 * 182.39288 * 17 16 14 40 40 H 1.09010 * 109.50028 * 62.27874 * 17 16 14 41 41 H 1.09003 * 109.46756 * 184.49610 * 20 18 17 42 42 H 1.08993 * 109.46647 * 304.49160 * 20 18 17 43 43 H 1.08996 * 109.47165 * 64.50035 * 20 18 17 44 44 H 1.09003 * 109.47470 * 67.43489 * 22 21 18 45 45 H 1.09003 * 109.47289 * 187.42718 * 22 21 18 46 46 H 1.07995 * 120.00067 * 359.97438 * 24 23 22 47 47 H 1.08003 * 119.99486 * 180.25435 * 25 24 23 48 48 H 1.08006 * 119.99589 * 179.78932 * 26 25 24 49 49 H 1.07994 * 120.00571 * 179.97438 * 27 26 25 50 50 H 1.07998 * 120.00326 * 179.97438 * 28 27 26 51 51 H 1.08999 * 109.46161 * 181.75769 * 29 21 18 52 52 H 1.09000 * 109.46025 * 301.73303 * 29 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.5965 1.9847 -0.8351 5 6 3.5405 1.4448 -0.1398 6 1 4.1540 1.8865 0.6315 7 6 4.1301 0.8830 -1.2523 8 7 3.3830 0.3448 -2.1914 9 14 5.9901 0.8864 -1.4259 10 1 6.5964 1.5480 -0.2427 11 1 6.4812 -0.5120 -1.5175 12 1 6.3710 1.6265 -2.6557 13 7 1.6647 2.0946 1.2618 14 6 1.4823 3.5400 1.0734 15 1 2.2447 3.9179 0.3922 16 6 0.0938 3.8075 0.4860 17 6 -0.1111 5.3187 0.3488 18 6 0.0583 5.9780 1.7193 19 1 -0.0727 7.0558 1.6226 20 6 -0.9897 5.4217 2.6854 21 7 1.4022 5.6932 2.2383 22 6 1.6497 6.4242 3.4882 23 6 1.3556 7.8876 3.2811 24 6 2.3201 8.7164 2.7390 25 6 2.0487 10.0579 2.5449 26 6 0.8163 10.5725 2.9018 27 6 -0.1464 9.7447 3.4484 28 6 0.1235 8.4024 3.6386 29 6 1.6054 4.2507 2.4231 30 1 -0.3633 -1.0239 0.0873 31 1 -0.3633 0.5876 0.8432 32 1 -0.3633 0.4364 -0.9304 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 3.7978 -0.0500 -2.9743 36 1 0.8358 1.6736 1.6539 37 1 -0.6676 3.3953 1.1481 38 1 0.0170 3.3389 -0.4952 39 1 -1.1139 5.5171 -0.0292 40 1 0.6264 5.7245 -0.3439 41 1 -0.9215 5.9477 3.6377 42 1 -1.9844 5.5627 2.2629 43 1 -0.8095 4.3585 2.8440 44 1 1.0033 6.0312 4.2731 45 1 2.6924 6.3010 3.7809 46 1 3.2844 8.3152 2.4643 47 1 2.8008 10.7046 2.1176 48 1 0.6056 11.6213 2.7533 49 1 -1.1090 10.1468 3.7276 50 1 -0.6285 7.7557 4.0660 51 1 2.5979 4.0738 2.8375 52 1 0.8514 3.8626 3.1080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180593904.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:25 Heat of formation + Delta-G solvation = 7.888712 kcal Electronic energy + Delta-G solvation = -27594.984966 eV Core-core repulsion = 24171.959083 eV Total energy + Delta-G solvation = -3423.025883 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.22323 -39.71896 -37.91218 -35.20232 -34.04299 -33.11537 -31.95493 -31.73984 -30.34787 -28.69251 -27.66112 -26.48135 -24.67222 -23.94280 -23.41100 -22.97267 -21.61755 -21.47203 -19.47725 -18.28039 -17.64100 -17.28673 -16.81642 -16.49435 -16.14991 -15.97143 -15.80114 -15.50002 -15.13953 -14.77970 -14.50692 -14.41253 -14.23799 -14.06870 -13.70337 -13.59560 -13.37499 -13.32927 -13.07925 -13.01108 -12.88042 -12.83348 -12.71899 -12.51242 -12.08374 -11.99375 -11.88891 -11.77132 -11.71684 -11.55654 -11.51186 -11.23276 -11.11273 -10.91734 -10.41014 -9.74840 -9.64476 -9.10651 -8.88549 -8.04528 -6.15764 0.46856 0.56517 1.39566 1.41626 1.53618 2.44918 2.75529 3.16122 3.21236 3.67776 3.85515 3.90548 3.96254 4.01825 4.10341 4.20687 4.31816 4.32663 4.38766 4.45766 4.51673 4.57530 4.58767 4.63112 4.65681 4.69167 4.70609 4.73259 4.79078 4.83200 4.87429 5.04906 5.06770 5.10478 5.13895 5.18428 5.23039 5.23892 5.28137 5.36181 5.40072 5.51653 5.62155 5.64740 5.68322 5.78064 5.79047 5.93404 6.14441 6.22338 6.26254 6.40316 6.59547 6.98572 7.05954 7.53192 8.98252 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016464 B = 0.003339 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.250142 B = 8383.934816 C = 9477.152008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C 0.232 3.768 4 H -0.028 1.028 5 C -0.508 4.508 6 H 0.046 0.954 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.272 1.272 11 H -0.279 1.279 12 H -0.283 1.283 13 N -0.683 5.683 14 C 0.106 3.894 15 H 0.043 0.957 16 C -0.138 4.138 17 C -0.103 4.103 18 C 0.086 3.914 19 H 0.086 0.914 20 C -0.183 4.183 21 N -0.537 5.537 22 C 0.096 3.904 23 C -0.086 4.086 24 C -0.116 4.116 25 C -0.130 4.130 26 C -0.127 4.127 27 C -0.126 4.126 28 C -0.121 4.121 29 C 0.081 3.919 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.035 0.965 33 H 0.067 0.933 34 H 0.036 0.964 35 H 0.259 0.741 36 H 0.327 0.673 37 H 0.071 0.929 38 H 0.037 0.963 39 H 0.079 0.921 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.077 0.923 46 H 0.117 0.883 47 H 0.134 0.866 48 H 0.141 0.859 49 H 0.142 0.858 50 H 0.130 0.870 51 H 0.063 0.937 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.500 17.205 11.966 23.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C 0.124 3.876 4 H -0.010 1.010 5 C -0.546 4.546 6 H 0.064 0.936 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.197 1.197 11 H -0.205 1.205 12 H -0.209 1.209 13 N -0.314 5.314 14 C -0.005 4.005 15 H 0.062 0.938 16 C -0.178 4.178 17 C -0.142 4.142 18 C -0.022 4.022 19 H 0.104 0.896 20 C -0.241 4.241 21 N -0.261 5.261 22 C -0.031 4.031 23 C -0.086 4.086 24 C -0.135 4.135 25 C -0.148 4.148 26 C -0.145 4.145 27 C -0.144 4.144 28 C -0.139 4.139 29 C -0.047 4.047 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.146 0.854 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.135 0.865 47 H 0.152 0.848 48 H 0.158 0.842 49 H 0.159 0.841 50 H 0.148 0.852 51 H 0.081 0.919 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.461 17.304 11.680 22.921 hybrid contribution -0.035 -0.667 -0.608 0.903 sum -9.495 16.637 11.072 22.125 Atomic orbital electron populations 1.21734 0.96262 1.01143 1.00262 1.21629 0.94230 0.99211 1.01137 1.18828 0.93602 0.90330 0.84890 1.00997 1.21538 0.93140 1.35992 1.03973 0.93553 1.25647 1.02048 0.95514 0.95677 1.70005 1.35977 1.40221 1.09874 0.85593 0.81184 0.77658 0.77708 1.19679 1.20492 1.20895 1.60569 1.39297 1.02167 1.29324 1.21288 0.95056 0.88374 0.95811 0.93808 1.22227 0.97996 0.97250 1.00283 1.21513 1.01526 0.94191 0.96955 1.21646 0.86777 0.99977 0.93781 0.89577 1.22481 0.99953 1.01535 1.00128 1.62076 1.28048 1.07543 1.28460 1.21020 1.01635 0.89835 0.90606 1.19777 0.94666 0.94719 0.99460 1.21187 0.99541 0.94073 0.98671 1.21400 0.98018 0.95234 1.00169 1.21453 0.93466 1.00868 0.98732 1.21409 1.00233 0.93447 0.99336 1.21298 0.96116 0.96143 1.00375 1.21818 1.00707 0.86320 0.95847 0.92332 0.92597 0.94623 0.91504 0.94565 0.93196 0.85407 0.91013 0.94433 0.90208 0.93292 0.91618 0.91022 0.92626 0.93098 0.90414 0.86514 0.84835 0.84156 0.84059 0.85196 0.91867 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 9.82 71.98 0.71 -4.41 16 2 C -0.12 -5.86 5.33 30.60 0.16 -5.70 16 3 C 0.23 11.72 1.81 44.17 0.08 11.80 16 4 H -0.03 -1.56 6.84 -2.39 -0.02 -1.57 16 5 C -0.51 -28.98 8.71 25.60 0.22 -28.75 16 6 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 7 C 0.01 0.50 5.29 84.65 0.45 0.95 16 8 N -0.92 -53.88 11.29 21.45 0.24 -53.64 16 9 Si 0.95 45.42 29.54 68.60 2.03 47.45 16 10 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 N -0.68 -28.69 6.05 -473.03 -2.86 -31.55 16 14 C 0.11 3.99 2.46 44.97 0.11 4.10 16 15 H 0.04 2.04 7.85 -2.38 -0.02 2.02 16 16 C -0.14 -4.48 4.92 30.67 0.15 -4.33 16 17 C -0.10 -2.87 5.61 30.64 0.17 -2.69 16 18 C 0.09 2.08 2.42 44.93 0.11 2.19 16 19 H 0.09 2.05 5.87 -2.39 -0.01 2.04 16 20 C -0.18 -3.62 7.94 71.98 0.57 -3.05 16 21 N -0.54 -14.66 4.70 -875.66 -4.11 -18.77 16 22 C 0.10 2.19 4.80 85.56 0.41 2.60 16 23 C -0.09 -1.82 4.17 -19.87 -0.08 -1.91 16 24 C -0.12 -2.52 9.73 22.27 0.22 -2.31 16 25 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16 26 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 27 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 28 C -0.12 -2.17 7.97 22.27 0.18 -1.99 16 29 C 0.08 2.53 4.78 86.32 0.41 2.94 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.84 6.37 -2.39 -0.02 1.82 16 32 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 3.64 5.94 -2.39 -0.01 3.62 16 34 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 36 H 0.33 12.26 6.24 -89.69 -0.56 11.70 16 37 H 0.07 2.06 6.63 -2.39 -0.02 2.04 16 38 H 0.04 1.40 7.23 -2.38 -0.02 1.39 16 39 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 40 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.06 1.13 4.91 -2.39 -0.01 1.12 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.05 1.23 4.80 -2.39 -0.01 1.22 16 44 H 0.05 1.05 6.84 -2.39 -0.02 1.03 16 45 H 0.08 1.83 8.12 -2.39 -0.02 1.81 16 46 H 0.12 2.61 8.06 -2.91 -0.02 2.58 16 47 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 48 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 49 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 50 H 0.13 1.98 6.22 -2.91 -0.02 1.96 16 51 H 0.06 2.16 8.12 -2.39 -0.02 2.14 16 52 H 0.05 1.30 6.10 -2.39 -0.01 1.29 16 Total: -1.00 -62.78 384.06 0.17 -62.61 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: 0.33 Total: 30.15 kcal Atomic # 6 Polarization: -40.79 SS G_CDS: 4.54 Total: -36.25 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -6.73 Total: -103.96 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -62.78 0.17 -62.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180593904.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.503 kcal (2) G-P(sol) polarization free energy of solvation -62.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds