Wall clock time and date at job start Tue Mar 31 2020 11:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50703 * 119.99819 * 2 1 4 4 C 1.30998 * 120.00403 * 180.02562 * 2 1 3 5 5 C 1.50704 * 119.99832 * 5.14246 * 4 2 1 6 6 C 1.53003 * 109.47097 * 124.26915 * 5 4 2 7 7 C 1.52999 * 109.46993 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.46773 * 55.00457 * 7 6 5 9 9 C 1.52995 * 109.47362 * 295.00183 * 7 6 5 10 10 C 1.52995 * 109.46753 * 175.00275 * 7 6 5 11 11 N 1.46906 * 109.47246 * 296.85053 * 10 7 6 12 12 C 1.46894 * 110.99848 * 288.07653 * 11 10 7 13 13 C 1.50703 * 109.47104 * 295.19155 * 12 11 10 14 14 H 1.08000 * 120.00107 * 2.32863 * 13 12 11 15 15 C 1.37880 * 119.99578 * 182.33004 * 13 12 11 16 16 N 1.31514 * 120.00573 * 359.97438 * 15 13 12 17 17 Si 1.86810 * 119.99496 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46909 * 60.00045 * 17 15 13 19 19 H 1.48501 * 109.46874 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47079 * 299.99884 * 17 15 13 21 21 C 1.46899 * 110.99951 * 164.12085 * 11 10 7 22 22 C 1.50696 * 109.47210 * 195.45826 * 21 11 10 23 23 C 1.38672 * 120.42110 * 263.87229 * 22 21 11 24 24 C 1.38627 * 118.42255 * 179.78019 * 23 22 21 25 25 C 1.38230 * 119.15785 * 0.51849 * 24 23 22 26 26 N 1.31849 * 120.76366 * 359.71908 * 25 24 23 27 27 C 1.31880 * 121.72594 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.47228 * 241.99729 * 1 2 3 29 29 H 1.08997 * 109.47411 * 1.99770 * 1 2 3 30 30 H 1.08998 * 109.47119 * 121.99949 * 1 2 3 31 31 H 1.08993 * 109.47324 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47335 * 300.00455 * 3 2 1 33 33 H 1.09000 * 109.47298 * 60.00057 * 3 2 1 34 34 H 1.07999 * 120.00439 * 185.14564 * 4 2 1 35 35 H 1.09008 * 109.46703 * 4.27138 * 5 4 2 36 36 H 1.08996 * 109.47394 * 244.27334 * 5 4 2 37 37 H 1.08998 * 109.46458 * 60.00235 * 6 5 4 38 38 H 1.08996 * 109.47341 * 300.00452 * 6 5 4 39 39 H 1.09001 * 109.47189 * 66.04374 * 9 7 6 40 40 H 1.08996 * 109.47437 * 186.04877 * 9 7 6 41 41 H 1.09003 * 109.47245 * 306.05626 * 9 7 6 42 42 H 1.09000 * 109.47245 * 56.85369 * 10 7 6 43 43 H 1.09006 * 109.47139 * 176.85077 * 10 7 6 44 44 H 1.08994 * 109.47408 * 55.19795 * 12 11 10 45 45 H 1.09001 * 109.47283 * 175.19650 * 12 11 10 46 46 H 0.96991 * 120.00106 * 179.97438 * 16 15 13 47 47 H 1.08997 * 109.47305 * 315.46358 * 21 11 10 48 48 H 1.09000 * 109.47255 * 75.46073 * 21 11 10 49 49 H 1.07999 * 120.79243 * 0.02562 * 23 22 21 50 50 H 1.07999 * 120.42273 * 180.22467 * 24 23 22 51 51 H 1.08001 * 119.61573 * 179.75195 * 25 24 23 52 52 H 1.08008 * 119.61686 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1621 -1.1344 -0.0005 5 6 1.4131 -2.4369 -0.1181 6 6 1.9543 -3.2307 -1.3089 7 6 1.1935 -4.5527 -1.4286 8 1 0.1239 -4.3520 -1.4900 9 6 1.4802 -5.4192 -0.2007 10 6 1.6474 -5.2898 -2.6902 11 7 1.3038 -4.4911 -3.8743 12 6 -0.1452 -4.5031 -4.1150 13 6 -0.5866 -5.9035 -4.4543 14 1 0.1303 -6.7113 -4.4511 15 6 -1.9055 -6.1534 -4.7690 16 7 -2.7786 -5.1698 -4.7725 17 14 -2.4527 -7.8895 -5.1889 18 1 -2.1827 -8.7860 -4.0362 19 1 -3.9075 -7.8915 -5.4868 20 1 -1.7030 -8.3710 -6.3768 21 6 2.0378 -4.9606 -5.0570 22 6 1.9652 -3.9159 -6.1407 23 6 1.0075 -4.0059 -7.1396 24 6 0.9751 -3.0197 -8.1133 25 6 1.8988 -1.9926 -8.0627 26 7 2.7988 -1.9419 -7.1005 27 6 2.8559 -2.8596 -6.1552 28 1 -0.3634 -0.4825 0.9074 29 1 -0.3634 1.0270 -0.0358 30 1 -0.3633 -0.5446 -0.8715 31 1 3.3321 1.1061 -0.0005 32 1 1.9971 1.8768 -0.8899 33 1 1.9972 1.8767 0.8900 34 1 3.2388 -1.1364 0.0834 35 1 0.3527 -2.2340 -0.2684 36 1 1.5462 -3.0163 0.7955 37 1 3.0146 -3.4335 -1.1586 38 1 1.8212 -2.6512 -2.2225 39 1 1.0611 -4.9432 0.6858 40 1 1.0264 -6.4010 -0.3349 41 1 2.5576 -5.5305 -0.0781 42 1 2.7263 -5.4409 -2.6544 43 1 1.1468 -6.2565 -2.7462 44 1 -0.6652 -4.1653 -3.2186 45 1 -0.3813 -3.8367 -4.9447 46 1 -3.7063 -5.3456 -4.9941 47 1 3.0802 -5.1368 -4.7915 48 1 1.5926 -5.8884 -5.4164 49 1 0.3011 -4.8226 -7.1563 50 1 0.2404 -3.0559 -8.9042 51 1 1.8828 -1.2226 -8.8198 52 1 3.6076 -2.7848 -5.3833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201485380.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:40 Heat of formation + Delta-G solvation = 23.436174 kcal Electronic energy + Delta-G solvation = -27103.115682 eV Core-core repulsion = 23680.763988 eV Total energy + Delta-G solvation = -3422.351695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.68326 -37.90506 -36.72048 -34.65649 -32.64714 -31.87890 -31.11215 -30.14227 -27.73445 -27.17907 -26.28586 -25.95998 -24.09718 -22.99250 -22.65948 -21.66564 -20.12626 -19.01463 -17.67172 -16.65403 -16.36784 -15.79330 -15.29025 -14.97785 -14.94751 -14.49237 -14.38039 -14.16722 -13.78185 -13.64551 -13.29128 -13.09773 -12.69740 -12.55945 -12.44934 -12.38064 -12.32407 -12.05950 -11.81385 -11.56189 -11.49585 -11.27950 -11.15008 -11.06851 -10.98797 -10.74726 -10.52809 -10.42800 -10.18356 -10.01573 -9.89807 -9.86015 -9.60793 -9.19571 -8.97763 -8.48757 -8.46221 -8.44266 -7.18073 -6.07309 -4.16605 1.61699 1.83981 2.34988 3.22245 3.28782 3.30530 4.28285 4.34530 4.88410 4.91310 5.05836 5.06943 5.22235 5.30975 5.36465 5.44964 5.48164 5.54223 5.54865 5.56275 5.58610 5.65746 5.68560 5.79866 5.85260 5.90516 5.92748 5.98626 6.05874 6.10287 6.12754 6.15956 6.17720 6.26232 6.30609 6.39826 6.45598 6.53773 6.57189 6.69960 6.80704 6.84992 6.94498 6.98072 7.00398 7.12966 7.19999 7.28255 7.50557 7.87016 8.02165 8.24539 8.26300 8.42617 8.93963 9.49596 10.96937 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.008264 B = 0.004652 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3387.262574 B = 6017.698810 C = 7927.295663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.146 4.146 3 C -0.113 4.113 4 C -0.154 4.154 5 C -0.097 4.097 6 C -0.095 4.095 7 C -0.084 4.084 8 H 0.076 0.924 9 C -0.144 4.144 10 C 0.066 3.934 11 N -0.533 5.533 12 C 0.187 3.813 13 C -0.548 4.548 14 H 0.055 0.945 15 C 0.069 3.931 16 N -0.887 5.887 17 Si 0.882 3.118 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.278 1.278 21 C 0.097 3.903 22 C -0.103 4.103 23 C -0.053 4.053 24 C -0.178 4.178 25 C 0.080 3.920 26 N -0.496 5.496 27 C 0.106 3.894 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.047 0.953 42 H 0.049 0.951 43 H 0.045 0.955 44 H 0.030 0.970 45 H 0.032 0.968 46 H 0.262 0.738 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.140 0.860 50 H 0.127 0.873 51 H 0.145 0.855 52 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.091 5.821 4.564 11.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.146 4.146 3 C -0.170 4.170 4 C -0.172 4.172 5 C -0.134 4.134 6 C -0.133 4.133 7 C -0.103 4.103 8 H 0.094 0.906 9 C -0.202 4.202 10 C -0.062 4.062 11 N -0.256 5.256 12 C 0.061 3.939 13 C -0.587 4.587 14 H 0.073 0.927 15 C -0.134 4.134 16 N -0.525 5.525 17 Si 0.710 3.290 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.032 4.032 22 C -0.105 4.105 23 C -0.079 4.079 24 C -0.198 4.198 25 C -0.077 4.077 26 N -0.205 5.205 27 C -0.051 4.051 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.048 0.952 45 H 0.050 0.950 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.158 0.842 50 H 0.145 0.855 51 H 0.163 0.837 52 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.633 7.048 4.644 12.807 hybrid contribution -1.473 -2.531 -0.441 2.962 sum 8.160 4.516 4.203 10.229 Atomic orbital electron populations 1.20795 0.92511 1.01775 1.02244 1.21557 0.95809 0.94908 1.02339 1.20805 0.99264 0.95361 1.01555 1.22725 0.99087 0.94220 1.01177 1.20854 0.99824 0.93757 0.99005 1.21427 0.98249 0.95675 0.97940 1.21084 1.01088 0.94538 0.93580 0.90573 1.21828 1.00648 0.99822 0.97878 1.21972 0.98120 0.95853 0.90247 1.62510 1.10323 1.51390 1.01395 1.19764 0.81180 0.95634 0.97284 1.21654 0.94174 0.95130 1.47748 0.92658 1.24910 0.96758 0.96452 0.95322 1.69930 1.03221 1.31154 1.48218 0.86818 0.77724 0.85509 0.78940 1.20299 1.21243 1.20316 1.20861 0.97552 0.94768 0.90002 1.20841 0.95744 0.97713 0.96246 1.21729 0.95853 0.98234 0.92088 1.22082 1.00629 0.96444 1.00598 1.22545 0.91715 0.97096 0.96318 1.67608 1.23024 1.26751 1.03102 1.22510 0.97675 0.89550 0.95389 0.91901 0.92674 0.91043 0.92398 0.91782 0.92301 0.87942 0.91244 0.91822 0.93253 0.90442 0.93095 0.93005 0.93424 0.93283 0.93648 0.95156 0.94982 0.92781 0.92063 0.92332 0.84248 0.85550 0.83743 0.83473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 8.61 36.01 0.31 -1.09 16 2 C -0.15 -1.80 6.05 -101.06 -0.61 -2.41 16 3 C -0.11 -1.17 10.04 36.01 0.36 -0.81 16 4 C -0.15 -1.96 9.12 -36.02 -0.33 -2.29 16 5 C -0.10 -1.31 5.22 -27.88 -0.15 -1.45 16 6 C -0.10 -1.41 4.60 -26.73 -0.12 -1.53 16 7 C -0.08 -1.36 2.39 -90.62 -0.22 -1.58 16 8 H 0.08 1.46 6.57 -51.93 -0.34 1.11 16 9 C -0.14 -1.99 8.79 37.16 0.33 -1.66 16 10 C 0.07 1.17 4.23 -3.82 -0.02 1.16 16 11 N -0.53 -10.36 3.90 -237.52 -0.93 -11.29 16 12 C 0.19 4.45 4.77 -4.98 -0.02 4.42 16 13 C -0.55 -13.86 7.26 -34.44 -0.25 -14.11 16 14 H 0.06 1.39 6.01 -52.49 -0.32 1.08 16 15 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 16 N -0.89 -24.85 13.29 55.43 0.74 -24.12 16 17 Si 0.88 20.47 29.54 -169.99 -5.02 15.44 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 C 0.10 1.75 4.95 -4.98 -0.02 1.72 16 22 C -0.10 -1.84 4.88 -104.49 -0.51 -2.35 16 23 C -0.05 -0.96 8.75 -39.28 -0.34 -1.30 16 24 C -0.18 -2.84 10.11 -39.44 -0.40 -3.24 16 25 C 0.08 1.25 11.18 -17.55 -0.20 1.05 16 26 N -0.50 -8.55 10.36 -13.25 -0.14 -8.68 16 27 C 0.11 1.80 10.88 -17.55 -0.19 1.61 16 28 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 29 H 0.05 0.59 8.00 -51.93 -0.42 0.17 16 30 H 0.07 0.96 7.33 -51.93 -0.38 0.58 16 31 H 0.06 0.56 7.79 -51.93 -0.40 0.15 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.10 1.21 7.84 -52.49 -0.41 0.80 16 35 H 0.07 1.00 5.79 -51.92 -0.30 0.70 16 36 H 0.06 0.80 6.70 -51.93 -0.35 0.45 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.33 7.55 -51.93 -0.39 0.94 16 39 H 0.05 0.65 6.87 -51.93 -0.36 0.29 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.78 7.73 -51.93 -0.40 0.38 16 43 H 0.05 0.90 6.48 -51.93 -0.34 0.57 16 44 H 0.03 0.79 6.48 -51.93 -0.34 0.46 16 45 H 0.03 0.85 6.71 -51.93 -0.35 0.50 16 46 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 47 H 0.06 0.97 7.72 -51.93 -0.40 0.56 16 48 H 0.06 1.16 6.08 -51.93 -0.32 0.85 16 49 H 0.14 2.74 8.06 -52.49 -0.42 2.32 16 50 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 51 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 52 H 0.15 2.24 8.06 -52.48 -0.42 1.81 16 LS Contribution 406.72 15.07 6.13 6.13 Total: -1.00 -27.58 406.72 -10.87 -38.44 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -9.17 Total: 6.21 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -2.48 Total: -22.14 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: -0.33 Total: -44.09 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -27.58 -10.87 -38.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201485380.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.880 kcal (2) G-P(sol) polarization free energy of solvation -27.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds