Wall clock time and date at job start Tue Mar 31 2020 11:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50703 * 119.99819 * 2 1 4 4 C 1.30998 * 120.00403 * 180.02562 * 2 1 3 5 5 C 1.50704 * 119.99832 * 5.14246 * 4 2 1 6 6 C 1.53003 * 109.47097 * 124.26915 * 5 4 2 7 7 C 1.52999 * 109.46993 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.46773 * 55.00457 * 7 6 5 9 9 C 1.52995 * 109.47362 * 295.00183 * 7 6 5 10 10 C 1.52995 * 109.46753 * 175.00275 * 7 6 5 11 11 N 1.46906 * 109.47246 * 296.85053 * 10 7 6 12 12 C 1.46894 * 110.99848 * 288.07653 * 11 10 7 13 13 C 1.50703 * 109.47104 * 295.19155 * 12 11 10 14 14 H 1.08000 * 120.00107 * 2.32863 * 13 12 11 15 15 C 1.37880 * 119.99578 * 182.33004 * 13 12 11 16 16 N 1.31514 * 120.00573 * 359.97438 * 15 13 12 17 17 Si 1.86810 * 119.99496 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46909 * 60.00045 * 17 15 13 19 19 H 1.48501 * 109.46874 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47079 * 299.99884 * 17 15 13 21 21 C 1.46899 * 110.99951 * 164.12085 * 11 10 7 22 22 C 1.50696 * 109.47210 * 195.45826 * 21 11 10 23 23 C 1.38672 * 120.42110 * 263.87229 * 22 21 11 24 24 C 1.38627 * 118.42255 * 179.78019 * 23 22 21 25 25 C 1.38230 * 119.15785 * 0.51849 * 24 23 22 26 26 N 1.31849 * 120.76366 * 359.71908 * 25 24 23 27 27 C 1.31880 * 121.72594 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.47228 * 241.99729 * 1 2 3 29 29 H 1.08997 * 109.47411 * 1.99770 * 1 2 3 30 30 H 1.08998 * 109.47119 * 121.99949 * 1 2 3 31 31 H 1.08993 * 109.47324 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47335 * 300.00455 * 3 2 1 33 33 H 1.09000 * 109.47298 * 60.00057 * 3 2 1 34 34 H 1.07999 * 120.00439 * 185.14564 * 4 2 1 35 35 H 1.09008 * 109.46703 * 4.27138 * 5 4 2 36 36 H 1.08996 * 109.47394 * 244.27334 * 5 4 2 37 37 H 1.08998 * 109.46458 * 60.00235 * 6 5 4 38 38 H 1.08996 * 109.47341 * 300.00452 * 6 5 4 39 39 H 1.09001 * 109.47189 * 66.04374 * 9 7 6 40 40 H 1.08996 * 109.47437 * 186.04877 * 9 7 6 41 41 H 1.09003 * 109.47245 * 306.05626 * 9 7 6 42 42 H 1.09000 * 109.47245 * 56.85369 * 10 7 6 43 43 H 1.09006 * 109.47139 * 176.85077 * 10 7 6 44 44 H 1.08994 * 109.47408 * 55.19795 * 12 11 10 45 45 H 1.09001 * 109.47283 * 175.19650 * 12 11 10 46 46 H 0.96991 * 120.00106 * 179.97438 * 16 15 13 47 47 H 1.08997 * 109.47305 * 315.46358 * 21 11 10 48 48 H 1.09000 * 109.47255 * 75.46073 * 21 11 10 49 49 H 1.07999 * 120.79243 * 0.02562 * 23 22 21 50 50 H 1.07999 * 120.42273 * 180.22467 * 24 23 22 51 51 H 1.08001 * 119.61573 * 179.75195 * 25 24 23 52 52 H 1.08008 * 119.61686 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1621 -1.1344 -0.0005 5 6 1.4131 -2.4369 -0.1181 6 6 1.9543 -3.2307 -1.3089 7 6 1.1935 -4.5527 -1.4286 8 1 0.1239 -4.3520 -1.4900 9 6 1.4802 -5.4192 -0.2007 10 6 1.6474 -5.2898 -2.6902 11 7 1.3038 -4.4911 -3.8743 12 6 -0.1452 -4.5031 -4.1150 13 6 -0.5866 -5.9035 -4.4543 14 1 0.1303 -6.7113 -4.4511 15 6 -1.9055 -6.1534 -4.7690 16 7 -2.7786 -5.1698 -4.7725 17 14 -2.4527 -7.8895 -5.1889 18 1 -2.1827 -8.7860 -4.0362 19 1 -3.9075 -7.8915 -5.4868 20 1 -1.7030 -8.3710 -6.3768 21 6 2.0378 -4.9606 -5.0570 22 6 1.9652 -3.9159 -6.1407 23 6 1.0075 -4.0059 -7.1396 24 6 0.9751 -3.0197 -8.1133 25 6 1.8988 -1.9926 -8.0627 26 7 2.7988 -1.9419 -7.1005 27 6 2.8559 -2.8596 -6.1552 28 1 -0.3634 -0.4825 0.9074 29 1 -0.3634 1.0270 -0.0358 30 1 -0.3633 -0.5446 -0.8715 31 1 3.3321 1.1061 -0.0005 32 1 1.9971 1.8768 -0.8899 33 1 1.9972 1.8767 0.8900 34 1 3.2388 -1.1364 0.0834 35 1 0.3527 -2.2340 -0.2684 36 1 1.5462 -3.0163 0.7955 37 1 3.0146 -3.4335 -1.1586 38 1 1.8212 -2.6512 -2.2225 39 1 1.0611 -4.9432 0.6858 40 1 1.0264 -6.4010 -0.3349 41 1 2.5576 -5.5305 -0.0781 42 1 2.7263 -5.4409 -2.6544 43 1 1.1468 -6.2565 -2.7462 44 1 -0.6652 -4.1653 -3.2186 45 1 -0.3813 -3.8367 -4.9447 46 1 -3.7063 -5.3456 -4.9941 47 1 3.0802 -5.1368 -4.7915 48 1 1.5926 -5.8884 -5.4164 49 1 0.3011 -4.8226 -7.1563 50 1 0.2404 -3.0559 -8.9042 51 1 1.8828 -1.2226 -8.8198 52 1 3.6076 -2.7848 -5.3833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201485380.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:40 Heat of formation + Delta-G solvation = 11.214451 kcal Electronic energy + Delta-G solvation = -27103.645656 eV Core-core repulsion = 23680.763988 eV Total energy + Delta-G solvation = -3422.881668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.03427 -39.28758 -37.90757 -35.95387 -34.58574 -33.27407 -32.43340 -31.33336 -29.05429 -28.65482 -27.56299 -27.08895 -25.86368 -24.33626 -24.04479 -22.93053 -21.64932 -20.44700 -18.72919 -18.42140 -17.81108 -17.20881 -16.75179 -16.61275 -16.15611 -15.95256 -15.71759 -15.29738 -15.18207 -14.74384 -14.67353 -14.42722 -14.16756 -13.95641 -13.83416 -13.71369 -13.36164 -13.20371 -13.03205 -12.90799 -12.82285 -12.71791 -12.62367 -12.45136 -12.29120 -12.24396 -12.17233 -11.90495 -11.83454 -11.54475 -11.29730 -11.22845 -11.12607 -10.59910 -10.52860 -10.32634 -9.79585 -9.44729 -8.90322 -8.10235 -6.28756 0.30889 0.46178 1.35769 1.36974 1.37349 1.43869 2.37445 2.93827 3.14059 3.54423 3.68174 3.88932 4.02451 4.12191 4.14029 4.16401 4.23777 4.27036 4.27991 4.34847 4.49970 4.56944 4.63259 4.70452 4.77569 4.81030 4.82463 4.84127 4.89711 4.94097 4.99165 5.00330 5.03469 5.04491 5.11359 5.13893 5.16260 5.28610 5.33164 5.34542 5.38412 5.40657 5.44642 5.58661 5.66408 5.72870 5.82320 5.89908 5.90426 6.11317 6.15609 6.32263 6.61968 6.92922 7.11364 7.41445 8.90506 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.008264 B = 0.004652 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3387.262574 B = 6017.698810 C = 7927.295663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.152 4.152 3 C -0.112 4.112 4 C -0.165 4.165 5 C -0.092 4.092 6 C -0.083 4.083 7 C -0.080 4.080 8 H 0.036 0.964 9 C -0.137 4.137 10 C 0.067 3.933 11 N -0.528 5.528 12 C 0.211 3.789 13 C -0.544 4.544 14 H 0.056 0.944 15 C 0.019 3.981 16 N -0.923 5.923 17 Si 0.943 3.057 18 H -0.273 1.273 19 H -0.287 1.287 20 H -0.270 1.270 21 C 0.100 3.900 22 C -0.117 4.117 23 C -0.074 4.074 24 C -0.177 4.177 25 C 0.084 3.916 26 N -0.508 5.508 27 C 0.105 3.895 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.020 0.980 44 H -0.001 1.001 45 H 0.002 0.998 46 H 0.262 0.738 47 H 0.091 0.909 48 H 0.036 0.964 49 H 0.114 0.886 50 H 0.149 0.851 51 H 0.182 0.818 52 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.152 6.140 4.921 13.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.152 4.152 3 C -0.169 4.169 4 C -0.183 4.183 5 C -0.129 4.129 6 C -0.121 4.121 7 C -0.099 4.099 8 H 0.054 0.946 9 C -0.195 4.195 10 C -0.061 4.061 11 N -0.250 5.250 12 C 0.084 3.916 13 C -0.583 4.583 14 H 0.074 0.926 15 C -0.181 4.181 16 N -0.563 5.563 17 Si 0.769 3.231 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.195 1.195 21 C -0.028 4.028 22 C -0.119 4.119 23 C -0.101 4.101 24 C -0.197 4.197 25 C -0.073 4.073 26 N -0.217 5.217 27 C -0.052 4.052 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.134 0.866 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.039 0.961 44 H 0.017 0.983 45 H 0.020 0.980 46 H 0.071 0.929 47 H 0.110 0.890 48 H 0.055 0.945 49 H 0.132 0.868 50 H 0.167 0.833 51 H 0.199 0.801 52 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 11.715 7.356 5.004 14.710 hybrid contribution -2.105 -2.576 -0.582 3.378 sum 9.610 4.780 4.422 11.608 Atomic orbital electron populations 1.20798 0.92881 1.02287 1.01456 1.21837 0.95888 0.95945 1.01543 1.20830 0.99483 0.94305 1.02258 1.22783 0.99723 0.93749 1.02004 1.20765 0.98865 0.94476 0.98837 1.21274 0.99045 0.94432 0.97342 1.21017 0.98822 0.95897 0.94207 0.94561 1.21764 1.02124 0.98756 0.96810 1.22054 0.99520 0.94466 0.90028 1.62442 1.07705 1.52140 1.02731 1.19272 0.83787 0.94151 0.94388 1.21871 0.94167 0.95720 1.46531 0.92561 1.25646 0.96997 0.99949 0.95459 1.70060 1.03426 1.33156 1.49689 0.85841 0.77171 0.81173 0.78918 1.19811 1.21228 1.19468 1.20880 0.98600 0.93898 0.89432 1.20851 0.96422 0.98398 0.96267 1.21696 0.96034 0.98670 0.93662 1.22341 1.01175 0.95745 1.00446 1.23124 0.90511 0.97336 0.96333 1.67686 1.23682 1.26769 1.03564 1.22736 0.97647 0.88979 0.95794 0.91434 0.91384 0.93264 0.91556 0.91681 0.90911 0.86581 0.93019 0.90546 0.91335 0.93156 0.91969 0.93867 0.91169 0.90354 0.96130 0.98302 0.98005 0.92930 0.89043 0.94530 0.86759 0.83278 0.80130 0.81695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.82 8.61 71.24 0.61 -2.21 16 2 C -0.15 -3.59 6.05 -16.48 -0.10 -3.69 16 3 C -0.11 -2.10 10.04 71.24 0.72 -1.38 16 4 C -0.16 -3.98 9.12 25.65 0.23 -3.74 16 5 C -0.09 -2.44 5.22 29.85 0.16 -2.28 16 6 C -0.08 -2.42 4.60 30.60 0.14 -2.28 16 7 C -0.08 -2.63 2.39 -10.80 -0.03 -2.66 16 8 H 0.04 1.47 6.57 -2.39 -0.02 1.45 16 9 C -0.14 -3.61 8.79 71.98 0.63 -2.97 16 10 C 0.07 2.38 4.23 86.30 0.37 2.75 16 11 N -0.53 -21.01 3.90 -905.38 -3.53 -24.55 16 12 C 0.21 10.58 4.77 85.56 0.41 10.99 16 13 C -0.54 -28.55 7.26 25.60 0.19 -28.37 16 14 H 0.06 2.90 6.01 -2.91 -0.02 2.89 16 15 C 0.02 1.03 5.46 84.66 0.46 1.50 16 16 N -0.92 -53.78 13.29 21.45 0.28 -53.50 16 17 Si 0.94 42.82 29.54 68.60 2.03 44.84 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 C 0.10 3.64 4.95 85.56 0.42 4.06 16 22 C -0.12 -4.21 4.88 -19.78 -0.10 -4.31 16 23 C -0.07 -2.76 8.75 22.47 0.20 -2.56 16 24 C -0.18 -5.55 10.11 22.36 0.23 -5.32 16 25 C 0.08 2.45 11.18 84.69 0.95 3.39 16 26 N -0.51 -16.67 10.36 -195.84 -2.03 -18.70 16 27 C 0.11 3.46 10.88 84.67 0.92 4.38 16 28 H 0.07 1.52 8.10 -2.38 -0.02 1.50 16 29 H 0.07 1.41 8.00 -2.39 -0.02 1.39 16 30 H 0.05 1.39 7.33 -2.39 -0.02 1.37 16 31 H 0.07 1.12 7.79 -2.39 -0.02 1.10 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.12 2.48 7.84 -2.91 -0.02 2.46 16 35 H 0.05 1.54 5.79 -2.38 -0.01 1.52 16 36 H 0.08 1.81 6.70 -2.39 -0.02 1.79 16 37 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.05 1.74 7.55 -2.39 -0.02 1.72 16 39 H 0.06 1.49 6.87 -2.39 -0.02 1.48 16 40 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.08 2.33 7.73 -2.39 -0.02 2.31 16 43 H 0.02 0.83 6.48 -2.38 -0.02 0.81 16 44 H 0.00 -0.06 6.48 -2.39 -0.02 -0.08 16 45 H 0.00 0.10 6.71 -2.39 -0.02 0.09 16 46 H 0.26 14.58 8.31 -92.72 -0.77 13.81 16 47 H 0.09 2.74 7.72 -2.39 -0.02 2.72 16 48 H 0.04 1.49 6.08 -2.39 -0.01 1.47 16 49 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 50 H 0.15 3.87 8.06 -2.91 -0.02 3.84 16 51 H 0.18 3.87 8.06 -2.91 -0.02 3.84 16 52 H 0.17 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -61.71 406.72 4.02 -57.69 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 0.87 Total: 28.91 kcal Atomic # 6 Polarization: -41.11 SS G_CDS: 6.41 Total: -34.71 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -5.28 Total: -96.74 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -61.71 4.02 -57.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201485380.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.906 kcal (2) G-P(sol) polarization free energy of solvation -61.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds