Wall clock time and date at job start Tue Mar 31 2020 11:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50697 * 120.00268 * 2 1 4 4 C 1.31001 * 119.99842 * 180.02562 * 2 1 3 5 5 C 1.50705 * 120.00122 * 7.40988 * 4 2 1 6 6 C 1.52998 * 109.47043 * 127.80875 * 5 4 2 7 7 C 1.52994 * 109.47356 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.46783 * 305.00260 * 7 6 5 9 9 C 1.53004 * 109.47435 * 64.99646 * 7 6 5 10 10 C 1.53000 * 109.47412 * 185.00046 * 7 6 5 11 11 N 1.46895 * 109.47317 * 64.04313 * 10 7 6 12 12 C 1.46900 * 110.99890 * 71.39039 * 11 10 7 13 13 C 1.50692 * 109.47471 * 55.83266 * 12 11 10 14 14 H 1.08007 * 119.99551 * 5.13286 * 13 12 11 15 15 C 1.37877 * 120.00605 * 185.13174 * 13 12 11 16 16 N 1.31511 * 119.99517 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00213 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47309 * 90.00408 * 17 15 13 19 19 H 1.48500 * 109.47074 * 210.00228 * 17 15 13 20 20 H 1.48503 * 109.47274 * 330.00105 * 17 15 13 21 21 C 1.46901 * 111.00099 * 195.34518 * 11 10 7 22 22 C 1.50694 * 109.47009 * 174.16255 * 21 11 10 23 23 C 1.38684 * 120.41915 * 275.19659 * 22 21 11 24 24 C 1.38625 * 118.42049 * 179.78349 * 23 22 21 25 25 C 1.38229 * 119.16126 * 0.51542 * 24 23 22 26 26 N 1.31856 * 120.76397 * 359.72679 * 25 24 23 27 27 C 1.31884 * 121.72730 * 359.97438 * 26 25 24 28 28 H 1.08995 * 109.47099 * 185.43897 * 1 2 3 29 29 H 1.09000 * 109.46537 * 305.43727 * 1 2 3 30 30 H 1.08994 * 109.46910 * 65.43760 * 1 2 3 31 31 H 1.08998 * 109.47202 * 270.00270 * 3 2 1 32 32 H 1.09003 * 109.47110 * 30.00060 * 3 2 1 33 33 H 1.09001 * 109.47136 * 150.00259 * 3 2 1 34 34 H 1.08001 * 119.99836 * 187.40989 * 4 2 1 35 35 H 1.08998 * 109.46921 * 7.80734 * 5 4 2 36 36 H 1.08996 * 109.46906 * 247.80454 * 5 4 2 37 37 H 1.09002 * 109.47077 * 59.99729 * 6 5 4 38 38 H 1.09002 * 109.47084 * 300.00259 * 6 5 4 39 39 H 1.09000 * 109.46902 * 54.91345 * 9 7 6 40 40 H 1.09001 * 109.46807 * 294.91902 * 9 7 6 41 41 H 1.08994 * 109.47465 * 174.91541 * 9 7 6 42 42 H 1.09004 * 109.47039 * 184.04757 * 10 7 6 43 43 H 1.09003 * 109.46748 * 304.04134 * 10 7 6 44 44 H 1.09003 * 109.47063 * 175.83625 * 12 11 10 45 45 H 1.09002 * 109.47434 * 295.82722 * 12 11 10 46 46 H 0.97001 * 119.99966 * 179.97438 * 16 15 13 47 47 H 1.09000 * 109.47097 * 294.16132 * 21 11 10 48 48 H 1.08997 * 109.46974 * 54.16510 * 21 11 10 49 49 H 1.07995 * 120.78600 * 0.02562 * 23 22 21 50 50 H 1.07997 * 120.42169 * 180.21758 * 24 23 22 51 51 H 1.08003 * 119.61811 * 179.74530 * 25 24 23 52 52 H 1.07998 * 119.62188 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4179 -2.4341 -0.1694 6 6 2.0560 -3.2439 -1.2998 7 6 1.3003 -4.5630 -1.4718 8 1 1.2727 -5.0928 -0.5195 9 6 -0.1288 -4.2753 -1.9367 10 6 2.0120 -5.4264 -2.5153 11 7 3.3500 -5.7834 -2.0254 12 6 3.2666 -6.7573 -0.9288 13 6 2.4922 -7.9657 -1.3881 14 1 2.1726 -8.0433 -2.4168 15 6 2.1917 -8.9723 -0.4950 16 7 2.5804 -8.8775 0.7577 17 14 1.2311 -10.4699 -1.0642 18 1 2.1757 -11.5126 -1.5393 19 1 0.4318 -11.0046 0.0673 20 1 0.3223 -10.0830 -2.1731 21 6 4.1924 -6.2903 -3.1169 22 6 5.5941 -6.5100 -2.6091 23 6 6.5007 -5.4611 -2.5741 24 6 7.7777 -5.7085 -2.0948 25 6 8.1060 -6.9858 -1.6808 26 7 7.2195 -7.9604 -1.7329 27 6 5.9940 -7.7603 -2.1774 28 1 -0.3633 -1.0230 0.0974 29 1 -0.3632 0.5959 0.8373 30 1 -0.3633 0.4272 -0.9346 31 1 2.4422 1.6197 -1.0276 32 1 1.6715 2.0647 0.5139 33 1 3.2130 1.1746 0.5138 34 1 3.2352 -1.1385 0.1201 35 1 0.3761 -2.2271 -0.4140 36 1 1.4670 -3.0041 0.7583 37 1 3.0979 -3.4509 -1.0552 38 1 2.0070 -2.6739 -2.2276 39 1 -0.1011 -3.6678 -2.8412 40 1 -0.6641 -3.7377 -1.1541 41 1 -0.6390 -5.2155 -2.1459 42 1 1.4349 -6.3344 -2.6904 43 1 2.1032 -4.8685 -3.4473 44 1 4.2715 -7.0600 -0.6345 45 1 2.7600 -6.3032 -0.0772 46 1 2.3687 -9.5855 1.3861 47 1 3.7860 -7.2338 -3.4813 48 1 4.2100 -5.5642 -3.9295 49 1 6.2173 -4.4741 -2.9086 50 1 8.5084 -4.9145 -2.0500 51 1 9.1001 -7.1877 -1.3099 52 1 5.2951 -8.5831 -2.2049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201485381.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:43 Heat of formation + Delta-G solvation = 30.121649 kcal Electronic energy + Delta-G solvation = -26941.036717 eV Core-core repulsion = 23518.974926 eV Total energy + Delta-G solvation = -3422.061791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.72621 -37.93046 -36.78965 -34.62327 -32.69416 -31.87040 -31.11032 -30.12055 -27.88252 -27.20898 -26.24801 -25.97437 -24.08095 -23.05196 -22.68964 -21.69801 -20.07195 -18.97570 -17.72619 -16.64731 -16.37280 -15.80981 -15.50122 -15.01780 -14.88055 -14.54659 -14.35761 -14.15894 -13.80362 -13.63165 -13.37160 -12.99390 -12.88534 -12.60701 -12.56939 -12.42580 -12.35480 -12.08142 -11.73894 -11.56719 -11.41134 -11.34790 -11.17759 -11.05017 -10.89537 -10.81898 -10.74013 -10.36099 -10.17154 -9.88618 -9.82525 -9.76304 -9.57349 -9.28139 -8.90632 -8.53475 -8.49119 -8.36969 -7.16651 -6.02568 -4.11837 1.61609 1.78973 2.27313 3.26568 3.34511 3.35564 4.28532 4.39708 4.82498 4.93520 4.98410 5.08819 5.22109 5.27575 5.28927 5.40319 5.44102 5.46106 5.47470 5.49193 5.58540 5.63229 5.67498 5.70027 5.79355 5.85090 5.87129 5.94729 5.99808 6.04417 6.09250 6.13989 6.16999 6.32309 6.36600 6.41650 6.44575 6.51292 6.53832 6.57013 6.77967 6.85740 6.88462 6.94238 7.02370 7.09466 7.22711 7.30058 7.55007 7.91019 8.03244 8.25797 8.29229 8.50381 8.98396 9.54720 11.02033 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.008992 B = 0.004215 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.099575 B = 6641.729339 C = 8908.145109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.156 4.156 3 C -0.112 4.112 4 C -0.145 4.145 5 C -0.103 4.103 6 C -0.095 4.095 7 C -0.083 4.083 8 H 0.079 0.921 9 C -0.143 4.143 10 C 0.066 3.934 11 N -0.534 5.534 12 C 0.184 3.816 13 C -0.549 4.549 14 H 0.056 0.944 15 C 0.070 3.930 16 N -0.885 5.885 17 Si 0.882 3.118 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.101 3.899 22 C -0.108 4.108 23 C -0.064 4.064 24 C -0.185 4.185 25 C 0.082 3.918 26 N -0.490 5.490 27 C 0.124 3.876 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.045 0.955 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.045 0.955 44 H 0.029 0.971 45 H 0.035 0.965 46 H 0.262 0.738 47 H 0.049 0.951 48 H 0.062 0.938 49 H 0.128 0.872 50 H 0.125 0.875 51 H 0.145 0.855 52 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.249 14.682 -5.125 15.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.156 4.156 3 C -0.169 4.169 4 C -0.163 4.163 5 C -0.140 4.140 6 C -0.132 4.132 7 C -0.102 4.102 8 H 0.097 0.903 9 C -0.201 4.201 10 C -0.062 4.062 11 N -0.257 5.257 12 C 0.059 3.941 13 C -0.588 4.588 14 H 0.074 0.926 15 C -0.134 4.134 16 N -0.523 5.523 17 Si 0.710 3.290 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.028 4.028 22 C -0.110 4.110 23 C -0.091 4.091 24 C -0.205 4.205 25 C -0.075 4.075 26 N -0.198 5.198 27 C -0.033 4.033 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.047 0.953 45 H 0.053 0.947 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.080 0.920 49 H 0.146 0.854 50 H 0.143 0.857 51 H 0.163 0.837 52 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.701 14.185 -4.480 14.973 hybrid contribution -1.110 -0.786 -0.636 1.502 sum 0.591 13.399 -5.116 14.354 Atomic orbital electron populations 1.20972 0.92756 1.02959 1.01349 1.21496 0.95681 0.94934 1.03533 1.20751 0.99432 0.95152 1.01584 1.22797 0.99526 0.94133 0.99799 1.20982 0.99291 0.93847 0.99855 1.21425 1.00732 0.94442 0.96631 1.21053 0.93265 0.95486 1.00356 0.90293 1.21823 0.97065 1.00981 1.00249 1.21970 0.90538 0.98092 0.95608 1.62596 1.11133 1.43093 1.08885 1.19808 0.97068 0.88129 0.89144 1.21648 1.36374 1.04776 0.95963 0.92589 1.24906 0.95614 0.98066 0.94784 1.69939 1.45839 1.33485 1.03084 0.86751 0.80261 0.83610 0.78355 1.20600 1.21223 1.20024 1.20796 0.89093 0.99216 0.93692 1.20830 0.96643 0.94185 0.99371 1.21382 0.92621 0.98761 0.96331 1.21992 0.97554 0.98395 1.02592 1.22624 0.98680 0.89224 0.96935 1.67711 1.03000 1.35132 1.13955 1.22921 0.91910 0.96769 0.91693 0.90854 0.92195 0.92286 0.91914 0.92515 0.92213 0.87641 0.90973 0.91371 0.90634 0.93325 0.93550 0.93216 0.92912 0.93018 0.93603 0.95278 0.94691 0.92835 0.93264 0.91968 0.85448 0.85711 0.83744 0.82251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.79 36.01 0.35 -0.89 16 2 C -0.16 -1.75 6.05 -101.07 -0.61 -2.37 16 3 C -0.11 -1.05 10.04 36.00 0.36 -0.69 16 4 C -0.14 -1.81 9.11 -36.02 -0.33 -2.13 16 5 C -0.10 -1.38 5.06 -27.88 -0.14 -1.52 16 6 C -0.09 -1.40 4.60 -26.73 -0.12 -1.52 16 7 C -0.08 -1.37 2.38 -90.62 -0.22 -1.58 16 8 H 0.08 1.56 6.68 -51.93 -0.35 1.21 16 9 C -0.14 -2.04 8.82 37.16 0.33 -1.71 16 10 C 0.07 1.19 4.16 -3.83 -0.02 1.17 16 11 N -0.53 -10.37 4.02 -237.52 -0.96 -11.33 16 12 C 0.18 4.42 4.63 -4.98 -0.02 4.39 16 13 C -0.55 -14.03 7.40 -34.44 -0.25 -14.29 16 14 H 0.06 1.42 5.93 -52.48 -0.31 1.11 16 15 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 16 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 17 Si 0.88 20.87 29.54 -169.99 -5.02 15.85 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C 0.10 1.79 4.95 -4.98 -0.02 1.77 16 22 C -0.11 -1.92 4.60 -104.48 -0.48 -2.40 16 23 C -0.06 -0.99 9.88 -39.27 -0.39 -1.38 16 24 C -0.19 -2.63 10.11 -39.44 -0.40 -3.03 16 25 C 0.08 1.30 11.18 -17.54 -0.20 1.10 16 26 N -0.49 -9.38 10.36 -13.25 -0.14 -9.52 16 27 C 0.12 2.45 9.30 -17.55 -0.16 2.28 16 28 H 0.07 0.76 5.25 -51.93 -0.27 0.49 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.47 8.12 -51.93 -0.42 0.04 16 33 H 0.06 0.54 8.04 -51.93 -0.42 0.12 16 34 H 0.11 1.31 8.01 -52.49 -0.42 0.89 16 35 H 0.07 0.90 3.83 -51.93 -0.20 0.70 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.25 7.59 -51.93 -0.39 0.86 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.64 6.82 -51.93 -0.35 0.29 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 1.05 5.99 -51.93 -0.31 0.74 16 43 H 0.05 0.74 7.88 -51.93 -0.41 0.33 16 44 H 0.03 0.77 5.84 -51.93 -0.30 0.47 16 45 H 0.04 0.93 6.77 -51.93 -0.35 0.58 16 46 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.05 0.95 6.77 -51.93 -0.35 0.60 16 48 H 0.06 0.96 7.95 -51.93 -0.41 0.55 16 49 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 50 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 51 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 52 H 0.16 3.38 8.06 -52.49 -0.42 2.96 16 LS Contribution 405.05 15.07 6.10 6.10 Total: -1.00 -28.30 405.05 -10.76 -39.06 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -9.06 Total: 5.50 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -2.42 Total: -21.03 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.36 Total: -45.48 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -28.30 -10.76 -39.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201485381.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.179 kcal (2) G-P(sol) polarization free energy of solvation -28.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds