Wall clock time and date at job start Tue Mar 31 2020 11:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50697 * 120.00268 * 2 1 4 4 C 1.31001 * 119.99842 * 180.02562 * 2 1 3 5 5 C 1.50705 * 120.00122 * 7.40988 * 4 2 1 6 6 C 1.52998 * 109.47043 * 127.80875 * 5 4 2 7 7 C 1.52994 * 109.47356 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.46783 * 305.00260 * 7 6 5 9 9 C 1.53004 * 109.47435 * 64.99646 * 7 6 5 10 10 C 1.53000 * 109.47412 * 185.00046 * 7 6 5 11 11 N 1.46895 * 109.47317 * 64.04313 * 10 7 6 12 12 C 1.46900 * 110.99890 * 71.39039 * 11 10 7 13 13 C 1.50692 * 109.47471 * 55.83266 * 12 11 10 14 14 H 1.08007 * 119.99551 * 5.13286 * 13 12 11 15 15 C 1.37877 * 120.00605 * 185.13174 * 13 12 11 16 16 N 1.31511 * 119.99517 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00213 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47309 * 90.00408 * 17 15 13 19 19 H 1.48500 * 109.47074 * 210.00228 * 17 15 13 20 20 H 1.48503 * 109.47274 * 330.00105 * 17 15 13 21 21 C 1.46901 * 111.00099 * 195.34518 * 11 10 7 22 22 C 1.50694 * 109.47009 * 174.16255 * 21 11 10 23 23 C 1.38684 * 120.41915 * 275.19659 * 22 21 11 24 24 C 1.38625 * 118.42049 * 179.78349 * 23 22 21 25 25 C 1.38229 * 119.16126 * 0.51542 * 24 23 22 26 26 N 1.31856 * 120.76397 * 359.72679 * 25 24 23 27 27 C 1.31884 * 121.72730 * 359.97438 * 26 25 24 28 28 H 1.08995 * 109.47099 * 185.43897 * 1 2 3 29 29 H 1.09000 * 109.46537 * 305.43727 * 1 2 3 30 30 H 1.08994 * 109.46910 * 65.43760 * 1 2 3 31 31 H 1.08998 * 109.47202 * 270.00270 * 3 2 1 32 32 H 1.09003 * 109.47110 * 30.00060 * 3 2 1 33 33 H 1.09001 * 109.47136 * 150.00259 * 3 2 1 34 34 H 1.08001 * 119.99836 * 187.40989 * 4 2 1 35 35 H 1.08998 * 109.46921 * 7.80734 * 5 4 2 36 36 H 1.08996 * 109.46906 * 247.80454 * 5 4 2 37 37 H 1.09002 * 109.47077 * 59.99729 * 6 5 4 38 38 H 1.09002 * 109.47084 * 300.00259 * 6 5 4 39 39 H 1.09000 * 109.46902 * 54.91345 * 9 7 6 40 40 H 1.09001 * 109.46807 * 294.91902 * 9 7 6 41 41 H 1.08994 * 109.47465 * 174.91541 * 9 7 6 42 42 H 1.09004 * 109.47039 * 184.04757 * 10 7 6 43 43 H 1.09003 * 109.46748 * 304.04134 * 10 7 6 44 44 H 1.09003 * 109.47063 * 175.83625 * 12 11 10 45 45 H 1.09002 * 109.47434 * 295.82722 * 12 11 10 46 46 H 0.97001 * 119.99966 * 179.97438 * 16 15 13 47 47 H 1.09000 * 109.47097 * 294.16132 * 21 11 10 48 48 H 1.08997 * 109.46974 * 54.16510 * 21 11 10 49 49 H 1.07995 * 120.78600 * 0.02562 * 23 22 21 50 50 H 1.07997 * 120.42169 * 180.21758 * 24 23 22 51 51 H 1.08003 * 119.61811 * 179.74530 * 25 24 23 52 52 H 1.07998 * 119.62188 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4179 -2.4341 -0.1694 6 6 2.0560 -3.2439 -1.2998 7 6 1.3003 -4.5630 -1.4718 8 1 1.2727 -5.0928 -0.5195 9 6 -0.1288 -4.2753 -1.9367 10 6 2.0120 -5.4264 -2.5153 11 7 3.3500 -5.7834 -2.0254 12 6 3.2666 -6.7573 -0.9288 13 6 2.4922 -7.9657 -1.3881 14 1 2.1726 -8.0433 -2.4168 15 6 2.1917 -8.9723 -0.4950 16 7 2.5804 -8.8775 0.7577 17 14 1.2311 -10.4699 -1.0642 18 1 2.1757 -11.5126 -1.5393 19 1 0.4318 -11.0046 0.0673 20 1 0.3223 -10.0830 -2.1731 21 6 4.1924 -6.2903 -3.1169 22 6 5.5941 -6.5100 -2.6091 23 6 6.5007 -5.4611 -2.5741 24 6 7.7777 -5.7085 -2.0948 25 6 8.1060 -6.9858 -1.6808 26 7 7.2195 -7.9604 -1.7329 27 6 5.9940 -7.7603 -2.1774 28 1 -0.3633 -1.0230 0.0974 29 1 -0.3632 0.5959 0.8373 30 1 -0.3633 0.4272 -0.9346 31 1 2.4422 1.6197 -1.0276 32 1 1.6715 2.0647 0.5139 33 1 3.2130 1.1746 0.5138 34 1 3.2352 -1.1385 0.1201 35 1 0.3761 -2.2271 -0.4140 36 1 1.4670 -3.0041 0.7583 37 1 3.0979 -3.4509 -1.0552 38 1 2.0070 -2.6739 -2.2276 39 1 -0.1011 -3.6678 -2.8412 40 1 -0.6641 -3.7377 -1.1541 41 1 -0.6390 -5.2155 -2.1459 42 1 1.4349 -6.3344 -2.6904 43 1 2.1032 -4.8685 -3.4473 44 1 4.2715 -7.0600 -0.6345 45 1 2.7600 -6.3032 -0.0772 46 1 2.3687 -9.5855 1.3861 47 1 3.7860 -7.2338 -3.4813 48 1 4.2100 -5.5642 -3.9295 49 1 6.2173 -4.4741 -2.9086 50 1 8.5084 -4.9145 -2.0500 51 1 9.1001 -7.1877 -1.3099 52 1 5.2951 -8.5831 -2.2049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201485381.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:42 Heat of formation + Delta-G solvation = 16.425037 kcal Electronic energy + Delta-G solvation = -26941.630647 eV Core-core repulsion = 23518.974926 eV Total energy + Delta-G solvation = -3422.655720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.07654 -39.29111 -37.94737 -35.89882 -34.62945 -33.29726 -32.37146 -31.29771 -29.11595 -28.65304 -27.51943 -27.06453 -25.87773 -24.38105 -24.04569 -22.94770 -21.58516 -20.44215 -18.70590 -18.41524 -17.80458 -17.22073 -16.76884 -16.72677 -16.19234 -16.01157 -15.61633 -15.33195 -14.97411 -14.81301 -14.65443 -14.34538 -14.26975 -14.11088 -13.83172 -13.75605 -13.21739 -13.12481 -13.03643 -12.90587 -12.78032 -12.66803 -12.53793 -12.45538 -12.39604 -12.38140 -12.09699 -11.94402 -11.78354 -11.62869 -11.23503 -11.11650 -11.00753 -10.61088 -10.52878 -10.24628 -9.79013 -9.45364 -8.90485 -8.09891 -6.27902 0.30796 0.50549 1.34745 1.36162 1.36396 1.44755 2.38008 2.93691 3.15206 3.55254 3.68497 3.88416 4.02347 4.08579 4.11598 4.18597 4.23078 4.26341 4.28935 4.44142 4.50156 4.63095 4.68435 4.72289 4.74362 4.77637 4.81473 4.86346 4.92693 4.96627 4.99003 5.00566 5.00834 5.09392 5.13756 5.21771 5.22891 5.27955 5.28142 5.30847 5.39922 5.42332 5.48590 5.53696 5.67793 5.70136 5.83330 5.93119 5.94134 6.11623 6.15654 6.31835 6.61408 6.93996 7.17036 7.42428 8.91297 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.008992 B = 0.004215 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.099575 B = 6641.729339 C = 8908.145109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.144 4.144 3 C -0.114 4.114 4 C -0.170 4.170 5 C -0.096 4.096 6 C -0.082 4.082 7 C -0.080 4.080 8 H 0.035 0.965 9 C -0.137 4.137 10 C 0.067 3.933 11 N -0.526 5.526 12 C 0.208 3.792 13 C -0.541 4.541 14 H 0.057 0.943 15 C 0.017 3.983 16 N -0.925 5.925 17 Si 0.943 3.057 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.265 1.265 21 C 0.103 3.897 22 C -0.121 4.121 23 C -0.063 4.063 24 C -0.169 4.169 25 C 0.074 3.926 26 N -0.522 5.522 27 C 0.096 3.904 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.024 0.976 43 H 0.076 0.924 44 H 0.002 0.998 45 H 0.000 1.000 46 H 0.261 0.739 47 H 0.028 0.972 48 H 0.096 0.904 49 H 0.156 0.844 50 H 0.170 0.830 51 H 0.178 0.822 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.479 17.699 -6.843 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.144 4.144 3 C -0.171 4.171 4 C -0.189 4.189 5 C -0.133 4.133 6 C -0.120 4.120 7 C -0.099 4.099 8 H 0.053 0.947 9 C -0.194 4.194 10 C -0.061 4.061 11 N -0.248 5.248 12 C 0.081 3.919 13 C -0.580 4.580 14 H 0.075 0.925 15 C -0.183 4.183 16 N -0.565 5.565 17 Si 0.769 3.231 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.189 1.189 21 C -0.025 4.025 22 C -0.123 4.123 23 C -0.089 4.089 24 C -0.188 4.188 25 C -0.083 4.083 26 N -0.231 5.231 27 C -0.061 4.061 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.119 0.881 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.043 0.957 43 H 0.095 0.905 44 H 0.020 0.980 45 H 0.019 0.981 46 H 0.070 0.930 47 H 0.046 0.954 48 H 0.115 0.885 49 H 0.174 0.826 50 H 0.188 0.812 51 H 0.195 0.805 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.918 17.206 -6.223 18.397 hybrid contribution -1.093 -1.615 -0.109 1.954 sum 0.825 15.590 -6.333 16.847 Atomic orbital electron populations 1.21036 0.91873 1.02931 1.02581 1.21835 0.96526 0.95273 1.00742 1.20812 0.99469 0.94377 1.02452 1.22675 0.99399 0.94031 1.02751 1.20871 1.00119 0.94036 0.98235 1.21272 0.99159 0.93624 0.97904 1.20987 0.95218 0.95821 0.97844 0.94664 1.21763 0.95080 1.01002 1.01599 1.22038 0.89229 0.97524 0.97266 1.62523 1.12352 1.41242 1.08728 1.19308 0.94582 0.88282 0.89734 1.21887 1.35313 1.05054 0.95762 0.92490 1.25668 0.96801 1.00946 0.94857 1.70072 1.47667 1.34470 1.04278 0.85778 0.79001 0.80257 0.78041 1.20419 1.21131 1.18941 1.20857 0.88845 0.99090 0.93729 1.20818 0.97078 0.94279 1.00118 1.21744 0.92604 0.99035 0.95538 1.22455 0.97750 0.98731 0.99882 1.23266 0.99283 0.89434 0.96358 1.67616 1.03321 1.37257 1.14953 1.22538 0.92275 0.96956 0.94313 0.91538 0.90957 0.90950 0.90888 0.91152 0.92137 0.88075 0.89724 0.93720 0.92778 0.91618 0.91219 0.92024 0.94016 0.95749 0.90537 0.97982 0.98150 0.93048 0.95404 0.88545 0.82589 0.81214 0.80524 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.79 71.24 0.70 -1.54 16 2 C -0.14 -2.91 6.05 -16.49 -0.10 -3.01 16 3 C -0.11 -1.82 10.04 71.23 0.71 -1.11 16 4 C -0.17 -4.10 9.11 25.65 0.23 -3.86 16 5 C -0.10 -2.55 5.06 29.85 0.15 -2.40 16 6 C -0.08 -2.38 4.60 30.59 0.14 -2.24 16 7 C -0.08 -2.67 2.38 -10.79 -0.03 -2.70 16 8 H 0.03 1.48 6.68 -2.39 -0.02 1.47 16 9 C -0.14 -3.74 8.82 71.98 0.63 -3.10 16 10 C 0.07 2.42 4.16 86.30 0.36 2.78 16 11 N -0.53 -20.93 4.02 -905.39 -3.64 -24.57 16 12 C 0.21 10.60 4.63 85.55 0.40 10.99 16 13 C -0.54 -29.12 7.40 25.60 0.19 -28.93 16 14 H 0.06 3.01 5.93 -2.91 -0.02 2.99 16 15 C 0.02 0.93 5.46 84.66 0.46 1.39 16 16 N -0.92 -55.82 13.29 21.45 0.28 -55.53 16 17 Si 0.94 44.36 29.54 68.60 2.03 46.39 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 C 0.10 3.69 4.95 85.56 0.42 4.11 16 22 C -0.12 -4.33 4.60 -19.77 -0.09 -4.42 16 23 C -0.06 -1.80 9.88 22.47 0.22 -1.57 16 24 C -0.17 -4.26 10.11 22.36 0.23 -4.03 16 25 C 0.07 2.20 11.18 84.69 0.95 3.15 16 26 N -0.52 -20.54 10.36 -195.84 -2.03 -22.57 16 27 C 0.10 3.97 9.30 84.67 0.79 4.76 16 28 H 0.07 1.25 5.25 -2.39 -0.01 1.24 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 0.94 8.12 -2.39 -0.02 0.92 16 33 H 0.06 0.96 8.04 -2.39 -0.02 0.94 16 34 H 0.10 2.47 8.01 -2.91 -0.02 2.45 16 35 H 0.08 2.01 3.83 -2.39 -0.01 2.01 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.05 1.80 7.59 -2.39 -0.02 1.78 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.06 1.53 6.82 -2.39 -0.02 1.51 16 41 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.02 1.01 5.99 -2.38 -0.01 1.00 16 43 H 0.08 2.30 7.88 -2.39 -0.02 2.28 16 44 H 0.00 0.12 5.84 -2.39 -0.01 0.11 16 45 H 0.00 0.02 6.77 -2.39 -0.02 0.01 16 46 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 47 H 0.03 1.11 6.77 -2.39 -0.02 1.09 16 48 H 0.10 2.78 7.95 -2.39 -0.02 2.76 16 49 H 0.16 3.55 8.06 -2.91 -0.02 3.52 16 50 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 51 H 0.18 3.96 8.06 -2.91 -0.02 3.94 16 52 H 0.13 5.85 8.06 -2.91 -0.02 5.83 16 Total: -1.00 -66.12 405.05 3.88 -62.24 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.87 Total: 25.78 kcal Atomic # 6 Polarization: -38.11 SS G_CDS: 6.37 Total: -31.74 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -5.39 Total: -102.67 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -66.12 3.88 -62.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201485381.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.669 kcal (2) G-P(sol) polarization free energy of solvation -66.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds