Wall clock time and date at job start Tue Mar 31 2020 10:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38226 * 119.62022 * 2 1 4 4 C 1.38627 * 119.16181 * 180.02562 * 3 2 1 5 5 C 1.38669 * 118.41640 * 359.74760 * 4 3 2 6 6 C 1.38177 * 119.16907 * 0.49482 * 5 4 3 7 7 C 1.50699 * 119.61996 * 179.77035 * 6 5 4 8 8 N 1.46901 * 109.46943 * 94.73132 * 7 6 5 9 9 C 1.46907 * 110.99667 * 283.90531 * 8 7 6 10 10 C 1.50696 * 109.47005 * 164.24169 * 9 8 7 11 11 H 1.08003 * 119.99822 * 356.64019 * 10 9 8 12 12 C 1.37880 * 120.00016 * 176.64240 * 10 9 8 13 13 N 1.31509 * 120.00118 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 119.99863 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.47491 * 270.00028 * 14 12 10 16 16 H 1.48506 * 109.47245 * 30.00002 * 14 12 10 17 17 H 1.48504 * 109.47179 * 150.00106 * 14 12 10 18 18 C 1.46902 * 111.00012 * 159.95849 * 8 7 6 19 19 C 1.53010 * 109.47145 * 52.85102 * 18 8 7 20 20 C 1.52994 * 109.45839 * 164.04663 * 19 18 8 21 21 C 1.52984 * 109.51061 * 315.98786 * 20 19 18 22 22 C 1.53012 * 109.46658 * 112.93618 * 21 20 19 23 23 C 1.53010 * 109.43072 * 284.04191 * 22 21 20 24 24 C 1.52981 * 109.48190 * 75.96248 * 23 22 21 25 25 C 1.52997 * 109.50674 * 247.06148 * 24 23 22 26 26 N 1.31859 * 119.61483 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47052 * 269.98096 * 1 2 3 28 28 H 1.09004 * 109.46689 * 29.98054 * 1 2 3 29 29 H 1.08998 * 109.47272 * 149.97849 * 1 2 3 30 30 H 1.08003 * 120.41308 * 0.02562 * 3 2 1 31 31 H 1.07995 * 120.78996 * 180.02562 * 4 3 2 32 32 H 1.08003 * 120.41255 * 180.24266 * 5 4 3 33 33 H 1.09001 * 109.47371 * 334.72878 * 7 6 5 34 34 H 1.09006 * 109.46956 * 214.72455 * 7 6 5 35 35 H 1.09002 * 109.46692 * 44.24759 * 9 8 7 36 36 H 1.08992 * 109.47052 * 284.24697 * 9 8 7 37 37 H 0.97002 * 120.00422 * 179.97438 * 13 12 10 38 38 H 1.08997 * 109.47231 * 172.85363 * 18 8 7 39 39 H 1.08994 * 109.47897 * 284.04564 * 19 18 8 40 40 H 1.09001 * 109.47368 * 44.05597 * 19 18 8 41 41 H 1.08999 * 109.46349 * 195.97739 * 20 19 18 42 42 H 1.09001 * 109.45856 * 75.99588 * 20 19 18 43 43 H 1.08995 * 109.47062 * 352.93832 * 21 20 19 44 44 H 1.08999 * 109.47551 * 232.93350 * 21 20 19 45 45 H 1.09006 * 109.47780 * 164.05944 * 22 21 20 46 46 H 1.08995 * 109.48597 * 44.03435 * 22 21 20 47 47 H 1.08994 * 109.46757 * 315.96160 * 23 22 21 48 48 H 1.08996 * 109.46469 * 195.96424 * 23 22 21 49 49 H 1.09003 * 109.46494 * 127.05283 * 24 23 22 50 50 H 1.09000 * 109.46594 * 7.07693 * 24 23 22 51 51 H 1.08993 * 109.47332 * 284.01558 * 25 24 23 52 52 H 1.09002 * 109.47319 * 164.01354 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1903 1.2016 0.0000 4 6 3.5765 1.1905 -0.0005 5 6 4.2266 -0.0343 0.0043 6 6 3.4767 -1.1948 -0.0009 7 6 4.1727 -2.5314 -0.0010 8 7 4.2922 -3.0213 1.3788 9 6 5.3594 -2.3130 2.0982 10 6 5.2076 -2.5467 3.5792 11 1 4.3685 -3.1148 3.9530 12 6 6.1398 -2.0354 4.4570 13 7 6.0071 -2.2389 5.7494 14 14 7.5914 -1.0535 3.8103 15 1 8.7246 -1.9713 3.5303 16 1 7.1991 -0.3555 2.5596 17 1 8.0045 -0.0529 4.8269 18 6 4.5139 -4.4733 1.4046 19 6 5.7016 -4.8240 0.5059 20 6 6.1843 -6.2394 0.8285 21 6 6.2362 -6.4282 2.3458 22 6 5.1783 -7.4494 2.7691 23 6 3.7961 -6.7938 2.7361 24 6 3.3257 -6.6677 1.2859 25 6 3.2609 -5.1895 0.8966 26 7 2.1587 -1.1463 -0.0005 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3634 -0.8898 -0.5142 30 1 1.6508 2.1373 0.0004 31 1 4.1367 2.1138 -0.0001 32 1 5.3056 -0.0805 0.0080 33 1 5.1665 -2.4236 -0.4357 34 1 3.5936 -3.2426 -0.5901 35 1 5.2912 -1.2452 1.8900 36 1 6.3291 -2.6861 1.7690 37 1 6.6631 -1.8794 6.3670 38 1 4.7248 -4.7905 2.4258 39 1 5.3942 -4.7742 -0.5386 40 1 6.5112 -4.1153 0.6806 41 1 7.1797 -6.3879 0.4098 42 1 5.4961 -6.9653 0.3955 43 1 6.0389 -5.4756 2.8373 44 1 7.2240 -6.7878 2.6337 45 1 5.3919 -7.7962 3.7802 46 1 5.1954 -8.2962 2.0831 47 1 3.8531 -5.8032 3.1870 48 1 3.0897 -7.4074 3.2951 49 1 2.3363 -7.1137 1.1848 50 1 4.0260 -7.1856 0.6305 51 1 2.3764 -4.7348 1.3425 52 1 3.2068 -5.1016 -0.1886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204068848.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:57 Heat of formation + Delta-G solvation = 34.814967 kcal Electronic energy + Delta-G solvation = -28391.138405 eV Core-core repulsion = 24969.280132 eV Total energy + Delta-G solvation = -3421.858273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.13230 -39.33579 -36.11537 -32.95942 -32.65555 -32.39785 -32.22541 -30.88277 -28.44642 -27.41676 -25.94120 -25.49570 -24.17019 -22.22750 -21.76466 -21.38476 -20.59525 -20.10940 -18.24184 -16.73621 -16.20612 -16.09501 -15.81609 -15.23156 -14.62300 -14.31749 -14.25140 -13.83125 -13.77263 -13.71156 -13.35391 -13.18080 -12.88402 -12.86244 -12.48580 -12.39944 -12.16034 -12.02905 -11.90578 -11.70734 -11.42546 -11.26882 -10.98496 -10.86364 -10.79204 -10.63737 -10.59636 -10.28734 -10.09414 -9.96348 -9.85727 -9.51073 -9.35852 -9.26411 -9.21027 -9.03618 -8.55600 -8.47012 -7.27231 -6.03543 -3.99179 1.41570 1.61491 3.25797 3.34220 3.34624 4.01557 4.41855 4.49792 4.84799 4.94410 5.00694 5.10929 5.23911 5.28221 5.30167 5.33457 5.40829 5.42446 5.56294 5.63180 5.63428 5.66113 5.68616 5.72552 5.74998 5.80443 5.89959 5.91703 6.01997 6.10066 6.19535 6.20377 6.26869 6.29521 6.36877 6.39970 6.44780 6.45496 6.51249 6.53465 6.58536 6.62975 6.72238 6.79806 6.85436 6.92594 7.03564 7.08708 7.22358 7.66861 7.95809 8.11190 8.42123 8.69523 9.07412 9.59131 11.09670 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009609 B = 0.005829 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.187497 B = 4802.326606 C = 6611.346573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.124 3.876 3 C -0.184 4.184 4 C -0.074 4.074 5 C -0.170 4.170 6 C 0.162 3.838 7 C 0.097 3.903 8 N -0.510 5.510 9 C 0.156 3.844 10 C -0.501 4.501 11 H 0.080 0.920 12 C 0.070 3.930 13 N -0.899 5.899 14 Si 0.868 3.132 15 H -0.277 1.277 16 H -0.269 1.269 17 H -0.287 1.287 18 C 0.074 3.926 19 C -0.152 4.152 20 C -0.117 4.117 21 C -0.137 4.137 22 C -0.113 4.113 23 C -0.133 4.133 24 C -0.121 4.121 25 C -0.109 4.109 26 N -0.466 5.466 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.027 0.973 36 H -0.011 1.011 37 H 0.262 0.738 38 H 0.124 0.876 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.086 0.914 48 H 0.052 0.948 49 H 0.052 0.948 50 H 0.066 0.934 51 H 0.071 0.929 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.755 -1.802 -13.159 14.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.015 4.015 3 C -0.205 4.205 4 C -0.100 4.100 5 C -0.190 4.190 6 C 0.023 3.977 7 C -0.032 4.032 8 N -0.232 5.232 9 C 0.029 3.971 10 C -0.539 4.539 11 H 0.098 0.902 12 C -0.131 4.131 13 N -0.538 5.538 14 Si 0.695 3.305 15 H -0.203 1.203 16 H -0.194 1.194 17 H -0.213 1.213 18 C -0.033 4.033 19 C -0.191 4.191 20 C -0.155 4.155 21 C -0.174 4.174 22 C -0.150 4.150 23 C -0.170 4.170 24 C -0.159 4.159 25 C -0.147 4.147 26 N -0.176 5.176 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.045 0.955 36 H 0.007 0.993 37 H 0.072 0.928 38 H 0.142 0.858 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.105 0.895 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.084 0.916 51 H 0.089 0.911 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.591 -2.430 -12.734 14.118 hybrid contribution 2.306 1.427 -0.533 2.764 sum -3.285 -1.003 -13.267 13.704 Atomic orbital electron populations 1.20661 0.89304 1.02778 1.02973 1.21236 0.96773 0.88456 0.94991 1.21817 0.94891 0.98998 1.04755 1.21467 0.94473 0.98031 0.96024 1.21969 1.01265 0.93219 1.02566 1.21171 0.89120 0.95211 0.92151 1.20961 0.97027 0.91957 0.93235 1.62134 1.47664 1.03434 1.09976 1.20314 0.87597 0.93864 0.95285 1.20988 1.10436 1.34202 0.88274 0.90155 1.24856 0.97563 0.95945 0.94743 1.69885 1.36168 1.46195 1.01587 0.86976 0.83747 0.80718 0.79019 1.20316 1.19362 1.21269 1.22317 0.92087 0.86994 1.01924 1.22342 1.00087 0.97210 0.99448 1.21741 1.00086 0.97196 0.96482 1.21902 0.98159 1.01327 0.96006 1.21641 0.95249 0.97530 1.00584 1.21864 0.96001 1.02423 0.96734 1.21806 1.00337 0.96904 0.96852 1.21660 0.99049 0.94432 0.99538 1.67305 1.09535 1.28854 1.11947 0.90512 0.91280 0.90717 0.85478 0.85356 0.85394 0.94149 0.89866 0.95532 0.99320 0.92786 0.85843 0.92973 0.91902 0.93316 0.91381 0.88935 0.92985 0.92578 0.92759 0.89548 0.92935 0.92957 0.91551 0.91069 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.15 10.17 36.01 0.37 -0.79 16 2 C 0.12 1.90 6.78 -82.58 -0.56 1.34 16 3 C -0.18 -2.57 9.74 -39.44 -0.38 -2.95 16 4 C -0.07 -1.08 10.18 -39.28 -0.40 -1.48 16 5 C -0.17 -2.86 8.37 -39.44 -0.33 -3.19 16 6 C 0.16 2.94 5.98 -82.59 -0.49 2.45 16 7 C 0.10 1.72 4.02 -4.98 -0.02 1.70 16 8 N -0.51 -10.41 4.31 -229.50 -0.99 -11.40 16 9 C 0.16 3.66 3.51 -4.97 -0.02 3.64 16 10 C -0.50 -13.88 8.94 -34.44 -0.31 -14.18 16 11 H 0.08 2.46 7.93 -52.48 -0.42 2.04 16 12 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 13 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 14 Si 0.87 21.31 27.40 -169.99 -4.66 16.65 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 16 H -0.27 -6.32 6.64 56.52 0.38 -5.95 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 C 0.07 1.34 1.49 -67.70 -0.10 1.24 16 19 C -0.15 -2.44 4.03 -26.73 -0.11 -2.55 16 20 C -0.12 -1.68 5.48 -26.74 -0.15 -1.83 16 21 C -0.14 -2.16 5.47 -26.73 -0.15 -2.30 16 22 C -0.11 -1.59 5.59 -26.72 -0.15 -1.74 16 23 C -0.13 -1.99 5.47 -26.74 -0.15 -2.13 16 24 C -0.12 -1.67 5.48 -26.74 -0.15 -1.81 16 25 C -0.11 -1.72 4.60 -26.73 -0.12 -1.84 16 26 N -0.47 -8.41 10.19 -5.74 -0.06 -8.47 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 31 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 32 H 0.13 2.06 7.81 -52.48 -0.41 1.65 16 33 H 0.04 0.68 7.51 -51.93 -0.39 0.29 16 34 H 0.08 1.38 6.22 -51.93 -0.32 1.06 16 35 H 0.03 0.65 5.30 -51.93 -0.28 0.37 16 36 H -0.01 -0.25 5.42 -51.93 -0.28 -0.53 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 38 H 0.12 2.52 1.84 -51.93 -0.10 2.42 16 39 H 0.05 0.76 7.34 -51.93 -0.38 0.38 16 40 H 0.06 1.12 6.19 -51.93 -0.32 0.80 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.89 4.69 -51.93 -0.24 0.65 16 43 H 0.09 1.79 5.47 -51.93 -0.28 1.51 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.05 0.68 7.47 -51.93 -0.39 0.29 16 47 H 0.09 1.57 5.47 -51.93 -0.28 1.28 16 48 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.07 0.85 4.69 -51.93 -0.24 0.61 16 51 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 52 H 0.05 0.74 6.67 -51.93 -0.35 0.39 16 LS Contribution 375.13 15.07 5.65 5.65 Total: -1.00 -30.57 375.13 -11.08 -41.65 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -8.49 Total: 6.88 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: -3.31 Total: -24.54 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.27 Total: -46.29 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.66 Total: 16.65 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.57 -11.08 -41.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204068848.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.462 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds