Wall clock time and date at job start Tue Mar 31 2020 10:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38226 * 119.62022 * 2 1 4 4 C 1.38627 * 119.16181 * 180.02562 * 3 2 1 5 5 C 1.38669 * 118.41640 * 359.74760 * 4 3 2 6 6 C 1.38177 * 119.16907 * 0.49482 * 5 4 3 7 7 C 1.50699 * 119.61996 * 179.77035 * 6 5 4 8 8 N 1.46901 * 109.46943 * 94.73132 * 7 6 5 9 9 C 1.46907 * 110.99667 * 283.90531 * 8 7 6 10 10 C 1.50696 * 109.47005 * 164.24169 * 9 8 7 11 11 H 1.08003 * 119.99822 * 356.64019 * 10 9 8 12 12 C 1.37880 * 120.00016 * 176.64240 * 10 9 8 13 13 N 1.31509 * 120.00118 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 119.99863 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.47491 * 270.00028 * 14 12 10 16 16 H 1.48506 * 109.47245 * 30.00002 * 14 12 10 17 17 H 1.48504 * 109.47179 * 150.00106 * 14 12 10 18 18 C 1.46902 * 111.00012 * 159.95849 * 8 7 6 19 19 C 1.53010 * 109.47145 * 52.85102 * 18 8 7 20 20 C 1.52994 * 109.45839 * 164.04663 * 19 18 8 21 21 C 1.52984 * 109.51061 * 315.98786 * 20 19 18 22 22 C 1.53012 * 109.46658 * 112.93618 * 21 20 19 23 23 C 1.53010 * 109.43072 * 284.04191 * 22 21 20 24 24 C 1.52981 * 109.48190 * 75.96248 * 23 22 21 25 25 C 1.52997 * 109.50674 * 247.06148 * 24 23 22 26 26 N 1.31859 * 119.61483 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47052 * 269.98096 * 1 2 3 28 28 H 1.09004 * 109.46689 * 29.98054 * 1 2 3 29 29 H 1.08998 * 109.47272 * 149.97849 * 1 2 3 30 30 H 1.08003 * 120.41308 * 0.02562 * 3 2 1 31 31 H 1.07995 * 120.78996 * 180.02562 * 4 3 2 32 32 H 1.08003 * 120.41255 * 180.24266 * 5 4 3 33 33 H 1.09001 * 109.47371 * 334.72878 * 7 6 5 34 34 H 1.09006 * 109.46956 * 214.72455 * 7 6 5 35 35 H 1.09002 * 109.46692 * 44.24759 * 9 8 7 36 36 H 1.08992 * 109.47052 * 284.24697 * 9 8 7 37 37 H 0.97002 * 120.00422 * 179.97438 * 13 12 10 38 38 H 1.08997 * 109.47231 * 172.85363 * 18 8 7 39 39 H 1.08994 * 109.47897 * 284.04564 * 19 18 8 40 40 H 1.09001 * 109.47368 * 44.05597 * 19 18 8 41 41 H 1.08999 * 109.46349 * 195.97739 * 20 19 18 42 42 H 1.09001 * 109.45856 * 75.99588 * 20 19 18 43 43 H 1.08995 * 109.47062 * 352.93832 * 21 20 19 44 44 H 1.08999 * 109.47551 * 232.93350 * 21 20 19 45 45 H 1.09006 * 109.47780 * 164.05944 * 22 21 20 46 46 H 1.08995 * 109.48597 * 44.03435 * 22 21 20 47 47 H 1.08994 * 109.46757 * 315.96160 * 23 22 21 48 48 H 1.08996 * 109.46469 * 195.96424 * 23 22 21 49 49 H 1.09003 * 109.46494 * 127.05283 * 24 23 22 50 50 H 1.09000 * 109.46594 * 7.07693 * 24 23 22 51 51 H 1.08993 * 109.47332 * 284.01558 * 25 24 23 52 52 H 1.09002 * 109.47319 * 164.01354 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1903 1.2016 0.0000 4 6 3.5765 1.1905 -0.0005 5 6 4.2266 -0.0343 0.0043 6 6 3.4767 -1.1948 -0.0009 7 6 4.1727 -2.5314 -0.0010 8 7 4.2922 -3.0213 1.3788 9 6 5.3594 -2.3130 2.0982 10 6 5.2076 -2.5467 3.5792 11 1 4.3685 -3.1148 3.9530 12 6 6.1398 -2.0354 4.4570 13 7 6.0071 -2.2389 5.7494 14 14 7.5914 -1.0535 3.8103 15 1 8.7246 -1.9713 3.5303 16 1 7.1991 -0.3555 2.5596 17 1 8.0045 -0.0529 4.8269 18 6 4.5139 -4.4733 1.4046 19 6 5.7016 -4.8240 0.5059 20 6 6.1843 -6.2394 0.8285 21 6 6.2362 -6.4282 2.3458 22 6 5.1783 -7.4494 2.7691 23 6 3.7961 -6.7938 2.7361 24 6 3.3257 -6.6677 1.2859 25 6 3.2609 -5.1895 0.8966 26 7 2.1587 -1.1463 -0.0005 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3634 -0.8898 -0.5142 30 1 1.6508 2.1373 0.0004 31 1 4.1367 2.1138 -0.0001 32 1 5.3056 -0.0805 0.0080 33 1 5.1665 -2.4236 -0.4357 34 1 3.5936 -3.2426 -0.5901 35 1 5.2912 -1.2452 1.8900 36 1 6.3291 -2.6861 1.7690 37 1 6.6631 -1.8794 6.3670 38 1 4.7248 -4.7905 2.4258 39 1 5.3942 -4.7742 -0.5386 40 1 6.5112 -4.1153 0.6806 41 1 7.1797 -6.3879 0.4098 42 1 5.4961 -6.9653 0.3955 43 1 6.0389 -5.4756 2.8373 44 1 7.2240 -6.7878 2.6337 45 1 5.3919 -7.7962 3.7802 46 1 5.1954 -8.2962 2.0831 47 1 3.8531 -5.8032 3.1870 48 1 3.0897 -7.4074 3.2951 49 1 2.3363 -7.1137 1.1848 50 1 4.0260 -7.1856 0.6305 51 1 2.3764 -4.7348 1.3425 52 1 3.2068 -5.1016 -0.1886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204068848.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:56 Heat of formation + Delta-G solvation = 17.136868 kcal Electronic energy + Delta-G solvation = -28391.904985 eV Core-core repulsion = 24969.280132 eV Total energy + Delta-G solvation = -3422.624853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.39873 -40.61703 -37.54321 -34.79280 -34.04261 -33.65924 -33.42984 -32.35820 -30.07559 -28.73585 -27.17613 -26.80789 -25.75826 -23.57662 -23.09081 -22.80419 -21.91110 -21.41858 -19.63531 -18.83217 -17.59129 -17.26381 -17.09340 -16.57451 -16.32737 -15.78727 -15.54948 -15.10096 -15.03676 -15.00073 -14.85696 -14.61471 -14.36591 -14.06973 -13.97291 -13.78791 -13.38434 -13.27094 -13.22312 -12.97845 -12.65332 -12.62908 -12.58902 -12.42185 -12.22334 -12.01569 -11.89726 -11.82922 -11.64045 -11.55546 -11.38362 -11.18110 -10.78486 -10.71789 -10.59307 -10.49773 -10.26731 -9.67996 -8.84438 -8.26345 -6.26689 0.21554 0.44144 1.29224 1.30584 1.40787 2.32512 2.77438 3.07508 3.35017 3.43390 3.76249 3.86746 3.93571 4.01101 4.08116 4.19779 4.21764 4.25624 4.31398 4.37550 4.42323 4.43546 4.48887 4.51227 4.61318 4.71440 4.73660 4.81102 4.82814 4.84621 4.89739 4.93260 5.03047 5.06177 5.08982 5.12160 5.22425 5.22955 5.24388 5.28792 5.32949 5.33983 5.36164 5.40467 5.50022 5.55882 5.60540 5.76205 5.80020 5.88687 6.09520 6.53052 6.71439 6.78917 7.20832 7.35647 8.90602 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009609 B = 0.005829 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.187497 B = 4802.326606 C = 6611.346573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.105 3.895 3 C -0.180 4.180 4 C -0.077 4.077 5 C -0.190 4.190 6 C 0.134 3.866 7 C 0.104 3.896 8 N -0.529 5.529 9 C 0.173 3.827 10 C -0.499 4.499 11 H 0.031 0.969 12 C 0.012 3.988 13 N -0.947 5.947 14 Si 0.934 3.066 15 H -0.267 1.267 16 H -0.250 1.250 17 H -0.283 1.283 18 C 0.072 3.928 19 C -0.145 4.145 20 C -0.110 4.110 21 C -0.136 4.136 22 C -0.107 4.107 23 C -0.132 4.132 24 C -0.113 4.113 25 C -0.100 4.100 26 N -0.496 5.496 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.165 0.835 31 H 0.159 0.841 32 H 0.129 0.871 33 H 0.049 0.951 34 H 0.092 0.908 35 H 0.022 0.978 36 H -0.009 1.009 37 H 0.264 0.736 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.041 0.959 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.047 0.953 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.084 0.916 47 H 0.043 0.957 48 H 0.062 0.938 49 H 0.070 0.930 50 H 0.087 0.913 51 H 0.044 0.956 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.601 -1.459 -16.019 16.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.033 4.033 3 C -0.199 4.199 4 C -0.102 4.102 5 C -0.211 4.211 6 C -0.004 4.004 7 C -0.024 4.024 8 N -0.252 5.252 9 C 0.046 3.954 10 C -0.537 4.537 11 H 0.050 0.950 12 C -0.185 4.185 13 N -0.588 5.588 14 Si 0.758 3.242 15 H -0.192 1.192 16 H -0.173 1.173 17 H -0.209 1.209 18 C -0.036 4.036 19 C -0.184 4.184 20 C -0.148 4.148 21 C -0.174 4.174 22 C -0.145 4.145 23 C -0.169 4.169 24 C -0.150 4.150 25 C -0.138 4.138 26 N -0.207 5.207 27 H 0.095 0.905 28 H 0.120 0.880 29 H 0.090 0.910 30 H 0.182 0.818 31 H 0.177 0.823 32 H 0.147 0.853 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.040 0.960 36 H 0.009 0.991 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.108 0.892 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.103 0.897 47 H 0.061 0.939 48 H 0.081 0.919 49 H 0.088 0.912 50 H 0.105 0.895 51 H 0.063 0.937 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.447 -2.098 -15.618 16.673 hybrid contribution 2.110 1.332 0.417 2.530 sum -3.337 -0.765 -15.201 15.582 Atomic orbital electron populations 1.20745 0.86898 1.04326 1.03376 1.21935 0.98564 0.88445 0.94360 1.22259 0.94874 0.99992 1.02797 1.21892 0.95190 0.98363 0.94775 1.22121 1.01462 0.93944 1.03523 1.21267 0.89654 0.95659 0.93860 1.20932 0.97658 0.92447 0.91400 1.62000 1.46506 1.04722 1.11943 1.19955 0.88751 0.93896 0.92778 1.21145 1.08720 1.32911 0.90949 0.95018 1.25713 1.00746 0.97236 0.94783 1.70048 1.37669 1.47973 1.03159 0.85905 0.79918 0.79306 0.79072 1.19237 1.17331 1.20909 1.22313 0.94155 0.85822 1.01268 1.22253 0.98350 0.97867 0.99963 1.21722 1.01513 0.96373 0.95164 1.21845 0.98902 0.99555 0.97073 1.21627 0.93944 0.97742 1.01170 1.21807 0.97103 1.00281 0.97727 1.21774 1.01880 0.95434 0.95914 1.21566 0.96639 0.95483 1.00096 1.67289 1.09695 1.30631 1.13087 0.90510 0.87989 0.90976 0.81756 0.82309 0.85321 0.93271 0.88985 0.95974 0.99110 0.92704 0.88673 0.90906 0.94072 0.91742 0.89165 0.93477 0.92567 0.93033 0.89717 0.93866 0.91928 0.91163 0.89501 0.93745 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.05 10.17 71.24 0.72 -1.33 16 2 C 0.11 3.10 6.78 42.55 0.29 3.39 16 3 C -0.18 -4.55 9.74 22.36 0.22 -4.33 16 4 C -0.08 -2.08 10.18 22.47 0.23 -1.85 16 5 C -0.19 -6.27 8.37 22.36 0.19 -6.08 16 6 C 0.13 4.86 5.98 42.54 0.25 5.11 16 7 C 0.10 3.69 4.02 85.56 0.34 4.04 16 8 N -0.53 -22.42 4.31 -880.02 -3.79 -26.21 16 9 C 0.17 8.41 3.51 85.55 0.30 8.71 16 10 C -0.50 -29.31 8.94 25.60 0.23 -29.08 16 11 H 0.03 2.11 7.93 -2.91 -0.02 2.09 16 12 C 0.01 0.72 5.47 84.66 0.46 1.18 16 13 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 14 Si 0.93 44.69 27.40 68.60 1.88 46.57 16 15 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 16 H -0.25 -11.08 6.64 99.48 0.66 -10.42 16 17 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 18 C 0.07 2.66 1.49 44.92 0.07 2.73 16 19 C -0.15 -4.58 4.03 30.60 0.12 -4.45 16 20 C -0.11 -2.96 5.48 30.59 0.17 -2.79 16 21 C -0.14 -4.33 5.47 30.59 0.17 -4.16 16 22 C -0.11 -2.97 5.59 30.60 0.17 -2.80 16 23 C -0.13 -3.99 5.47 30.59 0.17 -3.83 16 24 C -0.11 -2.92 5.48 30.59 0.17 -2.75 16 25 C -0.10 -3.15 4.60 30.60 0.14 -3.01 16 26 N -0.50 -17.89 10.19 -172.07 -1.75 -19.65 16 27 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.10 1.47 8.08 -2.38 -0.02 1.45 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 31 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 32 H 0.13 4.07 7.81 -2.91 -0.02 4.05 16 33 H 0.05 1.63 7.51 -2.39 -0.02 1.61 16 34 H 0.09 3.02 6.22 -2.38 -0.01 3.01 16 35 H 0.02 1.10 5.30 -2.39 -0.01 1.09 16 36 H -0.01 -0.41 5.42 -2.39 -0.01 -0.42 16 37 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 38 H 0.10 4.18 1.84 -2.39 0.00 4.18 16 39 H 0.07 1.98 7.34 -2.39 -0.02 1.96 16 40 H 0.04 1.47 6.19 -2.39 -0.01 1.45 16 41 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.09 2.03 4.69 -2.39 -0.01 2.02 16 43 H 0.05 1.95 5.47 -2.39 -0.01 1.94 16 44 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 46 H 0.08 1.85 7.47 -2.39 -0.02 1.83 16 47 H 0.04 1.71 5.47 -2.39 -0.01 1.69 16 48 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 50 H 0.09 1.92 4.69 -2.39 -0.01 1.90 16 51 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 52 H 0.07 1.87 6.67 -2.39 -0.02 1.85 16 Total: -1.00 -71.61 375.13 1.90 -69.71 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.86 Total: 30.66 kcal Atomic # 6 Polarization: -45.71 SS G_CDS: 4.41 Total: -41.30 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -5.25 Total: -105.64 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -71.61 1.90 -69.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204068848.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.848 kcal (2) G-P(sol) polarization free energy of solvation -71.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds