Wall clock time and date at job start Tue Mar 31 2020 11:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47020 * 2 1 4 4 C 1.53000 * 109.47020 * 179.97438 * 3 2 1 5 5 N 1.46908 * 109.47355 * 186.09802 * 4 3 2 6 6 C 1.46906 * 110.99627 * 294.82600 * 5 4 3 7 7 C 1.50695 * 109.46835 * 299.85048 * 6 5 4 8 8 H 1.08001 * 120.00483 * 354.83536 * 7 6 5 9 9 C 1.37880 * 119.99852 * 174.83677 * 7 6 5 10 10 N 1.31512 * 120.00121 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00106 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47130 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47201 * 120.00251 * 11 9 7 14 14 H 1.48499 * 109.47186 * 240.00326 * 11 9 7 15 15 C 1.46893 * 111.00033 * 170.87262 * 5 4 3 16 16 C 1.50701 * 109.46866 * 190.00156 * 15 5 4 17 17 C 1.38288 * 119.92984 * 89.99861 * 16 15 5 18 18 C 1.38104 * 120.07429 * 179.97438 * 17 16 15 19 19 C 1.38909 * 119.92841 * 0.02562 * 18 17 16 20 20 N 1.39670 * 120.07455 * 179.97438 * 19 18 17 21 21 C 1.48542 * 110.99956 * 116.63397 * 20 19 18 22 22 C 1.54930 * 103.22565 * 159.71964 * 21 20 19 23 23 C 1.54595 * 102.92570 * 322.58362 * 22 21 20 24 24 C 1.47903 * 110.99844 * 234.02657 * 20 19 18 25 25 C 1.38912 * 119.84640 * 0.24873 * 19 18 17 26 26 C 1.38102 * 119.92875 * 359.51489 * 25 19 18 27 27 H 1.08998 * 109.46955 * 59.99971 * 1 2 3 28 28 H 1.09004 * 109.47265 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47247 * 300.00303 * 1 2 3 30 30 H 1.09001 * 109.47247 * 239.99697 * 2 1 3 31 31 H 1.08998 * 109.46955 * 120.00028 * 2 1 3 32 32 H 1.08996 * 109.47459 * 60.00249 * 3 2 1 33 33 H 1.08998 * 109.47280 * 299.99830 * 3 2 1 34 34 H 1.08997 * 109.47559 * 66.09283 * 4 3 2 35 35 H 1.09001 * 109.47034 * 306.09212 * 4 3 2 36 36 H 1.08998 * 109.47048 * 59.84761 * 6 5 4 37 37 H 1.08996 * 109.46797 * 179.85421 * 6 5 4 38 38 H 0.96998 * 120.00219 * 179.97438 * 10 9 7 39 39 H 1.08998 * 109.47628 * 69.99811 * 15 5 4 40 40 H 1.09004 * 109.46972 * 309.99532 * 15 5 4 41 41 H 1.07993 * 119.96002 * 0.02562 * 17 16 15 42 42 H 1.08007 * 120.03459 * 179.97438 * 18 17 16 43 43 H 1.08995 * 110.66668 * 278.15730 * 21 20 19 44 44 H 1.09004 * 110.66239 * 41.28526 * 21 20 19 45 45 H 1.09005 * 110.72534 * 204.22729 * 22 21 20 46 46 H 1.08998 * 110.72750 * 80.94524 * 22 21 20 47 47 H 1.08997 * 110.31477 * 263.04290 * 23 22 21 48 48 H 1.09003 * 110.31283 * 140.86914 * 23 22 21 49 49 H 1.08995 * 109.91818 * 333.50915 * 24 20 19 50 50 H 1.09001 * 109.91619 * 94.60952 * 24 20 19 51 51 H 1.08006 * 120.03523 * 179.75404 * 25 19 18 52 52 H 1.07998 * 119.96418 * 180.23048 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8197 0.1478 6 6 3.6927 3.6361 -1.0171 7 6 4.3017 3.0401 -2.2600 8 1 4.9687 2.1942 -2.1824 9 6 4.0073 3.5747 -3.4964 10 7 3.1947 4.6044 -3.5910 11 14 4.7626 2.8363 -5.0371 12 1 5.6343 1.6940 -4.6625 13 1 3.6828 2.3597 -5.9383 14 1 5.5708 3.8680 -5.7355 15 6 5.5116 2.8413 0.3695 16 6 5.9397 4.2330 0.7580 17 6 5.9634 4.6008 2.0908 18 6 6.3557 5.8752 2.4502 19 6 6.7264 6.7883 1.4711 20 7 7.1232 8.0781 1.8312 21 6 8.5389 8.3241 1.4547 22 6 8.6347 9.8701 1.4266 23 6 7.2668 10.2908 0.8419 24 6 6.3311 9.0972 1.1090 25 6 6.6960 6.4173 0.1328 26 6 6.3073 5.1397 -0.2194 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9338 1.0259 -0.9386 35 1 3.9329 0.8372 0.8313 36 1 2.6077 3.6575 -1.1185 37 1 4.0652 4.6514 -0.8810 38 1 2.9879 4.9807 -4.4608 39 1 6.0235 2.5460 -0.5464 40 1 5.7674 2.1460 1.1690 41 1 5.6755 3.8904 2.8515 42 1 6.3736 6.1620 3.4914 43 1 9.2136 7.9103 2.2041 44 1 8.7532 7.9073 0.4705 45 1 9.4479 10.1945 0.7772 46 1 8.7623 10.2671 2.4337 47 1 7.3528 10.4717 -0.2295 48 1 6.8968 11.1823 1.3484 49 1 5.9723 8.6881 0.1646 50 1 5.4865 9.4135 1.7212 51 1 6.9797 7.1260 -0.6312 52 1 6.2871 4.8495 -1.2594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204327497.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:15 Heat of formation + Delta-G solvation = 5.913343 kcal Electronic energy + Delta-G solvation = -26910.437967 eV Core-core repulsion = 23487.326425 eV Total energy + Delta-G solvation = -3423.111542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.20232 -39.52314 -38.11110 -35.60355 -34.57926 -33.47243 -31.83762 -30.71363 -29.83482 -29.65469 -28.17649 -25.91808 -24.93636 -23.78993 -23.01338 -22.10032 -21.78905 -21.30656 -21.01242 -18.55516 -18.13032 -17.16517 -16.85807 -16.45939 -16.24277 -16.18316 -15.92558 -15.21570 -15.16695 -15.03710 -14.69930 -14.31950 -14.29735 -14.10079 -13.82823 -13.61834 -13.46323 -13.10649 -13.06559 -12.87947 -12.82143 -12.53676 -12.43819 -12.33906 -12.27421 -12.10024 -12.06726 -11.91991 -11.85999 -11.78963 -11.54022 -11.46095 -11.40935 -11.25509 -10.58153 -9.75288 -9.63732 -9.34875 -8.92770 -8.12487 -6.30277 0.37212 0.56526 1.30624 1.33412 1.43182 2.35159 2.76852 2.94636 3.11940 3.55115 3.70179 3.88518 3.96962 4.04721 4.09546 4.14312 4.15070 4.23267 4.32661 4.36953 4.48594 4.57486 4.58987 4.59611 4.64290 4.77298 4.79477 4.84817 4.91314 4.91877 4.94526 4.99459 5.01970 5.02730 5.13507 5.14404 5.16560 5.23718 5.27176 5.28431 5.36994 5.42182 5.47246 5.52664 5.58108 5.60564 5.78967 5.80631 5.85599 5.94773 6.11162 6.30799 6.46003 6.60256 6.91378 7.39493 8.88995 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011965 B = 0.003620 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.603224 B = 7732.572960 C = 9203.520114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.104 4.104 4 C 0.065 3.935 5 N -0.537 5.537 6 C 0.203 3.797 7 C -0.539 4.539 8 H 0.053 0.947 9 C 0.017 3.983 10 N -0.924 5.924 11 Si 0.944 3.056 12 H -0.267 1.267 13 H -0.280 1.280 14 H -0.281 1.281 15 C 0.099 3.901 16 C -0.076 4.076 17 C -0.095 4.095 18 C -0.102 4.102 19 C 0.069 3.931 20 N -0.483 5.483 21 C 0.033 3.967 22 C -0.114 4.114 23 C -0.127 4.127 24 C 0.029 3.971 25 C -0.159 4.159 26 C -0.102 4.102 27 H 0.039 0.961 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.030 0.970 34 H 0.019 0.981 35 H 0.080 0.920 36 H 0.003 0.997 37 H 0.008 0.992 38 H 0.261 0.739 39 H 0.026 0.974 40 H 0.091 0.909 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.090 0.910 44 H 0.038 0.962 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.069 0.931 48 H 0.089 0.911 49 H 0.032 0.968 50 H 0.080 0.920 51 H 0.110 0.890 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.309 3.142 12.224 14.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.142 4.142 4 C -0.063 4.063 5 N -0.260 5.260 6 C 0.076 3.924 7 C -0.578 4.578 8 H 0.071 0.929 9 C -0.183 4.183 10 N -0.565 5.565 11 Si 0.770 3.230 12 H -0.191 1.191 13 H -0.206 1.206 14 H -0.207 1.207 15 C -0.029 4.029 16 C -0.077 4.077 17 C -0.114 4.114 18 C -0.121 4.121 19 C -0.025 4.025 20 N -0.205 5.205 21 C -0.093 4.093 22 C -0.152 4.152 23 C -0.165 4.165 24 C -0.098 4.098 25 C -0.179 4.179 26 C -0.121 4.121 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.038 0.962 35 H 0.098 0.902 36 H 0.021 0.979 37 H 0.026 0.974 38 H 0.071 0.929 39 H 0.045 0.955 40 H 0.109 0.891 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.109 0.891 44 H 0.057 0.943 45 H 0.107 0.893 46 H 0.104 0.896 47 H 0.088 0.912 48 H 0.107 0.893 49 H 0.050 0.950 50 H 0.098 0.902 51 H 0.128 0.872 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.924 3.507 13.085 15.214 hybrid contribution 0.421 -0.556 -3.341 3.413 sum 7.345 2.951 9.744 12.554 Atomic orbital electron populations 1.21738 0.95237 1.02074 1.01456 1.21441 0.96404 0.95411 1.02049 1.21444 0.94828 0.97262 1.00638 1.21987 0.95594 0.89386 0.99353 1.62560 1.11523 1.11514 1.40363 1.19397 0.94596 0.92609 0.85805 1.21891 1.27770 1.15076 0.93073 0.92872 1.25661 0.95504 0.95281 1.01818 1.70076 1.36741 1.24656 1.24993 0.85725 0.78493 0.78618 0.80214 1.19133 1.20601 1.20729 1.20916 0.89048 0.93381 0.99518 1.19886 0.98044 0.96017 0.93714 1.21140 0.98487 0.96658 0.95117 1.21099 0.99028 0.92286 0.99661 1.19036 1.00462 0.91663 0.91320 1.62516 1.04074 0.99706 1.54178 1.23430 0.88533 0.97717 0.99623 1.22488 0.97091 0.93035 1.02585 1.22412 0.95065 0.97457 1.01553 1.23067 0.97634 0.92511 0.96551 1.21506 1.03130 0.96429 0.96863 1.20996 0.98231 0.93894 0.98989 0.94193 0.91221 0.92300 0.92928 0.90450 0.92091 0.95099 0.96219 0.90212 0.97853 0.97358 0.92950 0.95549 0.89092 0.83738 0.83717 0.89131 0.94335 0.89346 0.89586 0.91213 0.89275 0.94993 0.90161 0.87176 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.91 71.98 0.71 -2.98 16 2 C -0.12 -3.24 5.93 30.59 0.18 -3.05 16 3 C -0.10 -3.74 4.95 30.59 0.15 -3.59 16 4 C 0.06 2.45 4.74 86.30 0.41 2.86 16 5 N -0.54 -22.81 4.71 -905.37 -4.26 -27.08 16 6 C 0.20 10.60 4.51 85.55 0.39 10.98 16 7 C -0.54 -29.45 7.28 25.60 0.19 -29.27 16 8 H 0.05 2.89 5.90 -2.91 -0.02 2.87 16 9 C 0.02 0.93 5.46 84.66 0.46 1.39 16 10 N -0.92 -55.31 13.29 21.45 0.28 -55.02 16 11 Si 0.94 44.25 29.54 68.60 2.03 46.27 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 15 C 0.10 3.78 4.94 85.56 0.42 4.20 16 16 C -0.08 -2.85 4.89 -19.84 -0.10 -2.94 16 17 C -0.10 -2.97 9.69 22.25 0.22 -2.75 16 18 C -0.10 -3.02 9.97 22.40 0.22 -2.80 16 19 C 0.07 2.19 4.86 38.21 0.19 2.38 16 20 N -0.48 -12.93 5.28 -682.77 -3.60 -16.53 16 21 C 0.03 0.73 6.43 86.65 0.56 1.29 16 22 C -0.11 -1.90 7.06 31.80 0.22 -1.67 16 23 C -0.13 -2.36 6.93 31.47 0.22 -2.14 16 24 C 0.03 0.74 6.48 86.45 0.56 1.30 16 25 C -0.16 -5.73 7.91 22.40 0.18 -5.55 16 26 C -0.10 -4.14 7.89 22.25 0.18 -3.96 16 27 H 0.04 1.09 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.03 1.34 6.83 -2.39 -0.02 1.33 16 34 H 0.02 0.83 6.43 -2.39 -0.02 0.82 16 35 H 0.08 2.51 7.95 -2.39 -0.02 2.49 16 36 H 0.00 0.20 6.57 -2.39 -0.02 0.18 16 37 H 0.01 0.48 5.89 -2.39 -0.01 0.46 16 38 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 39 H 0.03 1.13 6.40 -2.39 -0.02 1.11 16 40 H 0.09 2.87 7.89 -2.39 -0.02 2.85 16 41 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 42 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 43 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.04 0.94 7.06 -2.38 -0.02 0.93 16 45 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 46 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.03 0.95 6.27 -2.39 -0.01 0.94 16 50 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 51 H 0.11 3.86 7.04 -2.91 -0.02 3.84 16 52 H 0.10 4.56 7.83 -2.91 -0.02 4.54 16 Total: -1.00 -63.47 398.15 0.66 -62.81 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.86 Total: 25.86 kcal Atomic # 6 Polarization: -41.66 SS G_CDS: 5.35 Total: -36.31 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -7.58 Total: -98.63 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -63.47 0.66 -62.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204327497.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.720 kcal (2) G-P(sol) polarization free energy of solvation -63.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds