Wall clock time and date at job start Tue Mar 31 2020 10:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38676 * 120.41962 * 2 1 4 4 C 1.38633 * 118.42137 * 180.23909 * 3 2 1 5 5 C 1.38228 * 119.16040 * 359.75160 * 4 3 2 6 6 N 1.31863 * 120.76109 * 359.97438 * 5 4 3 7 7 C 1.31876 * 121.72997 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.61957 * 179.97438 * 7 6 5 9 9 N 1.46907 * 109.47257 * 95.54283 * 8 7 6 10 10 C 1.46902 * 111.00107 * 165.63291 * 9 8 7 11 11 C 1.50695 * 109.47160 * 288.40494 * 10 9 8 12 12 H 1.08000 * 120.00113 * 354.72345 * 11 10 9 13 13 C 1.37880 * 120.00077 * 174.71563 * 11 10 9 14 14 N 1.31515 * 119.99910 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 119.99655 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47093 * 269.99627 * 15 13 11 17 17 H 1.48491 * 109.47225 * 29.99768 * 15 13 11 18 18 H 1.48495 * 109.46677 * 149.99813 * 15 13 11 19 19 C 1.46898 * 110.99790 * 289.58693 * 9 8 7 20 20 C 1.53013 * 109.47424 * 295.00268 * 19 9 8 21 21 C 1.52985 * 109.46402 * 164.04363 * 20 19 9 22 22 C 1.52982 * 109.51214 * 315.98890 * 21 20 19 23 23 C 1.53012 * 109.46908 * 112.93465 * 22 21 20 24 24 C 1.53006 * 109.42867 * 284.04329 * 23 22 21 25 25 C 1.52984 * 109.48673 * 75.96507 * 24 23 22 26 26 C 1.52999 * 109.50329 * 247.06416 * 25 24 23 27 27 H 1.09003 * 109.47244 * 264.70615 * 1 2 3 28 28 H 1.09007 * 109.46802 * 24.70723 * 1 2 3 29 29 H 1.09002 * 109.47019 * 144.70463 * 1 2 3 30 30 H 1.08001 * 120.78782 * 359.96694 * 3 2 1 31 31 H 1.07995 * 120.41845 * 179.72640 * 4 3 2 32 32 H 1.07993 * 119.62132 * 180.02562 * 5 4 3 33 33 H 1.08998 * 109.47277 * 335.54040 * 8 7 6 34 34 H 1.09005 * 109.47254 * 215.54072 * 8 7 6 35 35 H 1.08998 * 109.47066 * 168.40243 * 10 9 8 36 36 H 1.09006 * 109.46709 * 48.40663 * 10 9 8 37 37 H 0.96997 * 119.99334 * 180.02562 * 14 13 11 38 38 H 1.09008 * 109.46892 * 54.99937 * 19 9 8 39 39 H 1.08998 * 109.47013 * 284.04383 * 20 19 9 40 40 H 1.09002 * 109.47252 * 44.04692 * 20 19 9 41 41 H 1.08997 * 109.46692 * 195.97250 * 21 20 19 42 42 H 1.09008 * 109.45470 * 75.99675 * 21 20 19 43 43 H 1.08994 * 109.47054 * 352.93642 * 22 21 20 44 44 H 1.09000 * 109.46798 * 232.93299 * 22 21 20 45 45 H 1.08998 * 109.47382 * 164.05946 * 23 22 21 46 46 H 1.08995 * 109.48376 * 44.03872 * 23 22 21 47 47 H 1.09000 * 109.46848 * 315.95617 * 24 23 22 48 48 H 1.09002 * 109.46092 * 195.96983 * 24 23 22 49 49 H 1.08997 * 109.46491 * 127.05353 * 25 24 23 50 50 H 1.08996 * 109.46366 * 7.06908 * 25 24 23 51 51 H 1.09001 * 109.46975 * 284.01633 * 26 25 24 52 52 H 1.08994 * 109.47457 * 164.01269 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 -0.0051 5 6 4.2256 -0.0823 -0.0047 6 7 3.5254 -1.1996 0.0009 7 6 2.2067 -1.1916 0.0068 8 6 1.4540 -2.4972 0.0125 9 7 1.0997 -2.8522 1.3933 10 6 0.0886 -3.9175 1.4201 11 6 -1.2377 -3.3628 0.9684 12 1 -1.3421 -2.3061 0.7712 13 6 -2.3179 -4.2043 0.8068 14 7 -3.4756 -3.7200 0.4131 15 14 -2.1374 -6.0319 1.1484 16 1 -1.7238 -6.7295 -0.0956 17 1 -1.1080 -6.2400 2.1982 18 1 -3.4370 -6.5791 1.6141 19 6 2.2918 -3.2384 2.1599 20 6 2.8838 -4.5206 1.5710 21 6 4.3115 -4.7072 2.0879 22 6 5.0556 -3.3720 2.0270 23 6 5.3545 -2.8894 3.4479 24 6 4.0754 -2.3318 4.0757 25 6 3.1631 -3.4885 4.4880 26 6 1.9032 -3.4798 3.6199 27 1 -0.3634 -0.0948 1.0233 28 1 -0.3633 0.9337 -0.4296 29 1 -0.3633 -0.8388 -0.5938 30 1 1.6890 2.1423 -0.0005 31 1 4.1735 2.0592 -0.0097 32 1 5.3046 -0.1286 -0.0082 33 1 2.0809 -3.2799 -0.4145 34 1 0.5453 -2.3953 -0.5809 35 1 -0.0056 -4.3036 2.4351 36 1 0.3921 -4.7233 0.7517 37 1 -4.2355 -4.3120 0.2998 38 1 3.0316 -2.4395 2.1081 39 1 2.2744 -5.3731 1.8707 40 1 2.8977 -4.4482 0.4834 41 1 4.8290 -5.4401 1.4689 42 1 4.2811 -5.0594 3.1191 43 1 4.4373 -2.6345 1.5153 44 1 5.9912 -3.5020 1.4831 45 1 6.1135 -2.1078 3.4141 46 1 5.7190 -3.7243 4.0463 47 1 3.5593 -1.7026 3.3505 48 1 4.3306 -1.7392 4.9542 49 1 2.8834 -3.3749 5.5353 50 1 3.6904 -4.4328 4.3533 51 1 1.2368 -2.6849 3.9548 52 1 1.3954 -4.4403 3.7068 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205793654.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:36 Heat of formation + Delta-G solvation = 24.304534 kcal Electronic energy + Delta-G solvation = -29121.498502 eV Core-core repulsion = 25699.184463 eV Total energy + Delta-G solvation = -3422.314040 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.58739 -40.43129 -37.55624 -34.66919 -34.47027 -33.77352 -33.39938 -32.14783 -29.85844 -28.24848 -27.52705 -26.71443 -25.54562 -23.80611 -23.21639 -22.49281 -21.90089 -21.44879 -19.51548 -19.03951 -17.61544 -17.23615 -16.95114 -16.77533 -15.97538 -15.74673 -15.59854 -15.12392 -15.08082 -14.90807 -14.80988 -14.59996 -14.25542 -14.05028 -13.84704 -13.77941 -13.53098 -13.36299 -13.27830 -13.06995 -12.85106 -12.66207 -12.39760 -12.28148 -12.12362 -11.98515 -11.90786 -11.79085 -11.64255 -11.54015 -11.38192 -11.13111 -10.75999 -10.65534 -10.52646 -10.49203 -10.19514 -9.61421 -8.86995 -8.23270 -6.22693 0.29041 0.47648 1.31118 1.33611 1.43079 2.35419 2.84668 3.10514 3.32572 3.61709 3.73798 3.87211 3.98168 4.05147 4.09378 4.14103 4.21049 4.25478 4.29153 4.32556 4.38849 4.43596 4.51246 4.59553 4.64691 4.72575 4.81648 4.83906 4.88766 4.90858 4.93911 4.96597 4.99639 5.07266 5.09835 5.16608 5.18193 5.23403 5.30541 5.32861 5.34018 5.37300 5.39809 5.49056 5.53021 5.55104 5.62470 5.70298 5.80958 5.97077 6.11271 6.43906 6.74607 6.85899 7.19260 7.40322 8.92413 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010635 B = 0.006309 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.145097 B = 4436.749178 C = 6260.401835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.125 4.125 3 C -0.084 4.084 4 C -0.164 4.164 5 C 0.079 3.921 6 N -0.490 5.490 7 C 0.123 3.877 8 C 0.109 3.891 9 N -0.520 5.520 10 C 0.175 3.825 11 C -0.506 4.506 12 H 0.058 0.942 13 C 0.015 3.985 14 N -0.943 5.943 15 Si 0.929 3.071 16 H -0.273 1.273 17 H -0.256 1.256 18 H -0.283 1.283 19 C 0.067 3.933 20 C -0.147 4.147 21 C -0.113 4.113 22 C -0.141 4.141 23 C -0.110 4.110 24 C -0.123 4.123 25 C -0.117 4.117 26 C -0.111 4.111 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.154 0.846 31 H 0.167 0.833 32 H 0.180 0.820 33 H 0.037 0.963 34 H 0.074 0.926 35 H 0.028 0.972 36 H -0.022 1.022 37 H 0.263 0.737 38 H 0.119 0.881 39 H 0.040 0.960 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.051 0.949 48 H 0.068 0.932 49 H 0.066 0.934 50 H 0.078 0.922 51 H 0.050 0.950 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.016 6.668 3.659 21.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.127 4.127 3 C -0.110 4.110 4 C -0.183 4.183 5 C -0.079 4.079 6 N -0.200 5.200 7 C -0.014 4.014 8 C -0.019 4.019 9 N -0.243 5.243 10 C 0.048 3.952 11 C -0.544 4.544 12 H 0.076 0.924 13 C -0.182 4.182 14 N -0.585 5.585 15 Si 0.754 3.246 16 H -0.199 1.199 17 H -0.180 1.180 18 H -0.209 1.209 19 C -0.041 4.041 20 C -0.186 4.186 21 C -0.151 4.151 22 C -0.178 4.178 23 C -0.147 4.147 24 C -0.161 4.161 25 C -0.155 4.155 26 C -0.149 4.149 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.172 0.828 31 H 0.185 0.815 32 H 0.197 0.803 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.046 0.954 36 H -0.004 1.004 37 H 0.072 0.928 38 H 0.136 0.864 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.096 0.904 51 H 0.068 0.932 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 20.046 6.219 3.843 21.338 hybrid contribution -1.174 -1.060 -0.590 1.688 sum 18.873 5.159 3.253 19.834 Atomic orbital electron populations 1.20635 0.90610 1.02221 1.02102 1.20815 0.97513 0.94138 1.00282 1.21793 0.94970 0.97829 0.96366 1.22425 0.94727 1.00464 1.00725 1.23214 1.01224 0.87627 0.95812 1.67415 1.07191 1.32786 1.12570 1.20857 0.89789 0.94440 0.96297 1.20784 0.97448 0.92291 0.91421 1.62136 1.10179 1.40706 1.11248 1.19917 0.90487 0.89284 0.95531 1.21401 0.93709 0.96108 1.43219 0.92384 1.25629 0.94999 1.02485 0.95087 1.70019 1.02092 1.36910 1.49465 0.85986 0.77855 0.81440 0.79327 1.19894 1.18009 1.20896 1.22459 0.91834 0.97084 0.92692 1.22213 0.97887 0.98443 1.00031 1.21732 0.93708 0.98105 1.01557 1.21991 1.00417 0.97708 0.97679 1.21654 0.96612 1.00782 0.95647 1.21759 0.96232 0.97658 1.00412 1.21811 0.95176 0.99813 0.98699 1.21646 0.98083 1.00445 0.94685 0.92218 0.90321 0.93004 0.82808 0.81500 0.80341 0.94514 0.90770 0.95408 1.00384 0.92751 0.86380 0.94112 0.93392 0.92419 0.90546 0.89513 0.92044 0.91330 0.91187 0.93089 0.91336 0.91503 0.90376 0.93151 0.93764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.43 9.13 71.23 0.65 -2.78 16 2 C -0.12 -3.98 5.90 -19.77 -0.12 -4.10 16 3 C -0.08 -1.99 9.84 22.47 0.22 -1.77 16 4 C -0.16 -3.19 10.11 22.36 0.23 -2.96 16 5 C 0.08 1.76 11.18 84.69 0.95 2.71 16 6 N -0.49 -14.67 7.83 -183.89 -1.44 -16.11 16 7 C 0.12 4.24 5.55 42.54 0.24 4.48 16 8 C 0.11 4.38 4.46 85.55 0.38 4.77 16 9 N -0.52 -21.75 4.40 -880.01 -3.87 -25.63 16 10 C 0.17 8.46 2.83 85.56 0.24 8.70 16 11 C -0.51 -28.61 8.87 25.60 0.23 -28.38 16 12 H 0.06 3.54 7.03 -2.91 -0.02 3.52 16 13 C 0.02 0.89 5.47 84.66 0.46 1.35 16 14 N -0.94 -58.32 13.96 21.45 0.30 -58.02 16 15 Si 0.93 44.95 27.37 68.60 1.88 46.83 16 16 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 17 H -0.26 -11.79 6.70 99.48 0.67 -11.12 16 18 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 19 C 0.07 2.32 1.51 44.92 0.07 2.38 16 20 C -0.15 -4.87 4.16 30.59 0.13 -4.74 16 21 C -0.11 -2.92 5.48 30.58 0.17 -2.75 16 22 C -0.14 -3.32 5.47 30.59 0.17 -3.15 16 23 C -0.11 -2.18 5.59 30.60 0.17 -2.01 16 24 C -0.12 -2.84 5.47 30.59 0.17 -2.67 16 25 C -0.12 -2.95 5.48 30.59 0.17 -2.78 16 26 C -0.11 -3.69 4.34 30.60 0.13 -3.56 16 27 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.08 2.24 8.06 -2.38 -0.02 2.22 16 29 H 0.05 2.11 5.73 -2.39 -0.01 2.09 16 30 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 31 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 32 H 0.18 2.76 8.06 -2.91 -0.02 2.73 16 33 H 0.04 1.50 5.82 -2.39 -0.01 1.48 16 34 H 0.07 3.37 5.24 -2.38 -0.01 3.36 16 35 H 0.03 1.37 5.46 -2.39 -0.01 1.36 16 36 H -0.02 -1.06 6.61 -2.38 -0.02 -1.08 16 37 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 38 H 0.12 3.88 1.62 -2.38 0.00 3.87 16 39 H 0.04 1.45 7.34 -2.39 -0.02 1.43 16 40 H 0.05 1.73 5.82 -2.39 -0.01 1.72 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.08 1.82 4.69 -2.38 -0.01 1.81 16 43 H 0.09 2.36 3.56 -2.39 -0.01 2.35 16 44 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.07 1.25 7.47 -2.39 -0.02 1.23 16 47 H 0.05 1.43 5.47 -2.39 -0.01 1.42 16 48 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.08 1.82 4.69 -2.39 -0.01 1.81 16 51 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 52 H 0.04 1.58 6.66 -2.39 -0.02 1.56 16 Total: -1.00 -65.74 366.06 2.39 -63.35 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.88 Total: 26.87 kcal Atomic # 6 Polarization: -41.93 SS G_CDS: 4.65 Total: -37.29 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -5.01 Total: -99.76 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.83 kcal Total: -65.74 2.39 -63.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205793654.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.651 kcal (2) G-P(sol) polarization free energy of solvation -65.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds