Wall clock time and date at job start Tue Mar 31 2020 10:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38230 * 120.42049 * 2 1 4 4 N 1.31853 * 120.76260 * 180.26189 * 3 2 1 5 5 C 1.31884 * 121.72386 * 359.74496 * 4 3 2 6 6 C 1.38175 * 120.77102 * 359.97204 * 5 4 3 7 7 C 1.38627 * 120.41994 * 179.72528 * 2 1 3 8 8 C 1.50706 * 120.79045 * 0.02970 * 7 2 1 9 9 N 1.46894 * 109.47239 * 79.71468 * 8 7 2 10 10 C 1.46899 * 111.00172 * 66.04689 * 9 8 7 11 11 C 1.50702 * 109.47209 * 282.30525 * 10 9 8 12 12 H 1.07998 * 119.99846 * 354.62969 * 11 10 9 13 13 C 1.37877 * 119.99688 * 174.62642 * 11 10 9 14 14 N 1.31512 * 119.99914 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99607 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47255 * 60.00125 * 15 13 11 17 17 H 1.48508 * 109.46849 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47228 * 299.99998 * 15 13 11 19 19 C 1.46902 * 110.99915 * 190.00351 * 9 8 7 20 20 C 1.53009 * 109.47283 * 289.99186 * 19 9 8 21 21 C 1.52985 * 109.46400 * 164.04351 * 20 19 9 22 22 C 1.52985 * 109.51301 * 315.99327 * 21 20 19 23 23 C 1.53006 * 109.47175 * 112.93016 * 22 21 20 24 24 C 1.52999 * 109.43352 * 284.04726 * 23 22 21 25 25 C 1.52993 * 109.48927 * 75.95798 * 24 23 22 26 26 C 1.52993 * 109.50573 * 247.06509 * 25 24 23 27 27 H 1.08999 * 109.47371 * 270.27325 * 1 2 3 28 28 H 1.09001 * 109.46804 * 30.27592 * 1 2 3 29 29 H 1.08994 * 109.46690 * 150.26843 * 1 2 3 30 30 H 1.08002 * 119.61575 * 0.02562 * 3 2 1 31 31 H 1.08002 * 119.61492 * 180.02562 * 5 4 3 32 32 H 1.07995 * 120.42298 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47147 * 199.71414 * 8 7 2 34 34 H 1.09004 * 109.46415 * 319.71566 * 8 7 2 35 35 H 1.09000 * 109.47078 * 42.30938 * 10 9 8 36 36 H 1.09002 * 109.46815 * 162.30337 * 10 9 8 37 37 H 0.97007 * 119.99725 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.47224 * 49.99294 * 19 9 8 39 39 H 1.08998 * 109.47320 * 284.05013 * 20 19 9 40 40 H 1.09006 * 109.46994 * 44.05232 * 20 19 9 41 41 H 1.08997 * 109.46952 * 195.97912 * 21 20 19 42 42 H 1.09009 * 109.45603 * 75.99812 * 21 20 19 43 43 H 1.09000 * 109.46780 * 352.93603 * 22 21 20 44 44 H 1.08997 * 109.47520 * 232.93687 * 22 21 20 45 45 H 1.09000 * 109.47702 * 164.05825 * 23 22 21 46 46 H 1.09005 * 109.48192 * 44.03524 * 23 22 21 47 47 H 1.09003 * 109.47403 * 315.95490 * 24 23 22 48 48 H 1.08998 * 109.46978 * 195.96265 * 24 23 22 49 49 H 1.09004 * 109.46200 * 127.05048 * 25 24 23 50 50 H 1.09005 * 109.46004 * 7.07812 * 25 24 23 51 51 H 1.08997 * 109.47535 * 284.01443 * 26 25 24 52 52 H 1.09007 * 109.47215 * 164.00636 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0052 5 6 4.2256 0.0822 -0.0055 6 6 3.5948 -1.1471 0.0001 7 6 2.2089 -1.1954 0.0057 8 6 1.4832 -2.5162 0.0114 9 7 1.0312 -2.8324 -1.3501 10 6 2.1739 -3.0655 -2.2433 11 6 2.7789 -1.7436 -2.6404 12 1 2.3061 -0.8208 -2.3381 13 6 3.9360 -1.7123 -3.3895 14 7 4.5114 -2.8361 -3.7579 15 14 4.6863 -0.0738 -3.8812 16 1 5.0280 0.7002 -2.6608 17 1 5.9168 -0.3120 -4.6776 18 1 3.7102 0.6928 -4.6964 19 6 0.1208 -3.9853 -1.3481 20 6 0.9066 -5.2551 -1.0144 21 6 -0.0666 -6.3686 -0.6223 22 6 -1.1324 -5.8071 0.3207 23 6 -2.4932 -5.8259 -0.3786 24 6 -2.5595 -4.6835 -1.3941 25 6 -1.7385 -5.0520 -2.6313 26 6 -0.5209 -4.1308 -2.7295 27 1 -0.3634 0.0049 1.0276 28 1 -0.3633 0.8875 -0.5181 29 1 -0.3632 -0.8924 -0.5096 30 1 1.6675 2.1277 0.0004 31 1 5.3046 0.1284 -0.0094 32 1 4.1737 -2.0588 0.0002 33 1 2.1559 -3.2989 0.3619 34 1 0.6208 -2.4539 0.6753 35 1 2.9220 -3.6670 -1.7269 36 1 1.8361 -3.5931 -3.1353 37 1 5.3252 -2.8141 -4.2853 38 1 -0.6573 -3.8325 -0.6003 39 1 1.4822 -5.5659 -1.8862 40 1 1.5839 -5.0556 -0.1839 41 1 0.4787 -7.1673 -0.1196 42 1 -0.5460 -6.7638 -1.5180 43 1 -0.8762 -4.7823 0.5894 44 1 -1.1785 -6.4183 1.2220 45 1 -3.2838 -5.7009 0.3613 46 1 -2.6242 -6.7778 -0.8933 47 1 -2.1546 -3.7757 -0.9467 48 1 -3.5966 -4.5144 -1.6835 49 1 -2.3542 -4.9367 -3.5234 50 1 -1.4056 -6.0869 -2.5512 51 1 -0.8346 -3.1510 -3.0895 52 1 0.2032 -4.5582 -3.4233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205850697.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:37 Heat of formation + Delta-G solvation = 34.655954 kcal Electronic energy + Delta-G solvation = -28993.168663 eV Core-core repulsion = 25571.303495 eV Total energy + Delta-G solvation = -3421.865169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.99693 -39.24342 -36.22016 -33.23015 -32.66776 -32.61095 -31.65265 -30.46030 -27.54154 -26.92753 -26.00581 -25.60115 -23.89057 -22.55108 -21.86273 -21.16402 -20.66113 -20.07637 -18.31362 -16.64780 -15.97386 -15.87123 -15.60540 -14.94386 -14.40604 -14.35467 -14.04424 -13.97178 -13.96660 -13.53013 -13.30859 -13.13575 -13.00696 -12.67460 -12.22739 -12.12466 -12.05424 -11.85524 -11.71525 -11.61596 -11.21693 -11.13107 -10.99675 -10.87829 -10.77677 -10.73874 -10.57114 -10.49851 -10.30342 -10.23756 -9.90571 -9.54907 -9.44708 -9.22638 -8.70061 -8.56053 -8.20824 -8.05847 -7.27291 -5.98395 -3.94030 1.95706 2.11765 3.39200 3.41463 3.51301 4.42871 4.54919 4.73682 4.89629 4.97222 5.08322 5.20132 5.24563 5.34519 5.36627 5.37868 5.43560 5.44828 5.50611 5.57140 5.63390 5.69854 5.74010 5.78678 5.94666 5.97106 6.04854 6.05151 6.05904 6.10294 6.15606 6.20143 6.21827 6.25136 6.30723 6.36573 6.40838 6.50818 6.55602 6.58206 6.61395 6.66992 6.81093 6.85851 6.88615 7.19013 7.24675 7.36172 7.54075 7.87596 8.11257 8.16968 8.56442 8.75495 9.10736 9.67036 11.11402 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014293 B = 0.005177 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.505059 B = 5407.689690 C = 6364.012706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.125 4.125 3 C 0.077 3.923 4 N -0.493 5.493 5 C 0.080 3.920 6 C -0.109 4.109 7 C 0.001 3.999 8 C 0.102 3.898 9 N -0.524 5.524 10 C 0.192 3.808 11 C -0.488 4.488 12 H 0.064 0.936 13 C 0.061 3.939 14 N -0.901 5.901 15 Si 0.873 3.127 16 H -0.263 1.263 17 H -0.291 1.291 18 H -0.281 1.281 19 C 0.072 3.928 20 C -0.149 4.149 21 C -0.123 4.123 22 C -0.127 4.127 23 C -0.117 4.117 24 C -0.128 4.128 25 C -0.125 4.125 26 C -0.106 4.106 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.123 0.877 33 H 0.033 0.967 34 H 0.065 0.935 35 H -0.003 1.003 36 H 0.028 0.972 37 H 0.259 0.741 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.059 0.941 47 H 0.076 0.924 48 H 0.053 0.947 49 H 0.054 0.946 50 H 0.068 0.932 51 H 0.069 0.931 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.456 -4.319 8.647 14.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.128 4.128 3 C -0.081 4.081 4 N -0.202 5.202 5 C -0.076 4.076 6 C -0.129 4.129 7 C -0.007 4.007 8 C -0.025 4.025 9 N -0.247 5.247 10 C 0.067 3.933 11 C -0.527 4.527 12 H 0.082 0.918 13 C -0.139 4.139 14 N -0.541 5.541 15 Si 0.701 3.299 16 H -0.188 1.188 17 H -0.217 1.217 18 H -0.206 1.206 19 C -0.036 4.036 20 C -0.188 4.188 21 C -0.160 4.160 22 C -0.164 4.164 23 C -0.154 4.154 24 C -0.165 4.165 25 C -0.162 4.162 26 C -0.144 4.144 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.141 0.859 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.014 0.986 36 H 0.046 0.954 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.094 0.906 48 H 0.072 0.928 49 H 0.073 0.927 50 H 0.086 0.914 51 H 0.088 0.912 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.093 -3.175 8.352 14.244 hybrid contribution 0.823 -0.708 -0.401 1.157 sum -10.270 -3.882 7.952 13.556 Atomic orbital electron populations 1.20673 0.91224 1.03568 1.00867 1.20496 0.96868 0.93491 1.01912 1.22312 0.90053 0.96794 0.98922 1.67473 1.08308 1.31662 1.12724 1.22306 0.99393 0.88031 0.97859 1.21740 0.94633 0.98866 0.97662 1.19714 0.93147 0.94375 0.93478 1.20850 0.96962 0.92713 0.92012 1.62450 1.20026 1.35588 1.06652 1.19791 0.85759 0.96837 0.90874 1.21213 1.07291 0.92839 1.31350 0.91790 1.24824 0.97105 0.95724 0.96284 1.69940 1.20048 1.25702 1.38394 0.86914 0.78520 0.85023 0.79418 1.18776 1.21734 1.20637 1.22236 0.95260 0.88354 0.97779 1.22303 0.98348 0.96575 1.01589 1.21806 0.96880 0.97956 0.99394 1.21815 0.94855 1.01788 0.97983 1.21696 0.96867 0.98782 0.98093 1.21827 0.99464 0.99045 0.96185 1.21848 0.96819 1.00313 0.97239 1.21600 0.96221 0.99816 0.96792 0.92570 0.92327 0.89803 0.84344 0.84405 0.85899 0.94847 0.91692 0.98559 0.95378 0.93158 0.89240 0.91551 0.92520 0.93068 0.91109 0.90948 0.92893 0.92732 0.92194 0.90577 0.92835 0.92727 0.91406 0.91220 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 9.35 36.01 0.34 -1.21 16 2 C -0.13 -2.23 5.27 -104.48 -0.55 -2.78 16 3 C 0.08 1.42 10.86 -17.55 -0.19 1.23 16 4 N -0.49 -10.05 10.36 -13.25 -0.14 -10.19 16 5 C 0.08 1.61 10.93 -17.55 -0.19 1.41 16 6 C -0.11 -2.17 7.70 -39.44 -0.30 -2.48 16 7 C 0.00 0.03 3.30 -104.31 -0.34 -0.32 16 8 C 0.10 1.78 3.85 -4.98 -0.02 1.76 16 9 N -0.52 -9.83 3.87 -229.50 -0.89 -10.72 16 10 C 0.19 4.51 3.38 -4.98 -0.02 4.50 16 11 C -0.49 -12.75 6.17 -34.44 -0.21 -12.96 16 12 H 0.06 1.73 6.04 -52.49 -0.32 1.42 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 14 N -0.90 -25.92 13.29 55.43 0.74 -25.19 16 15 Si 0.87 22.03 29.54 -169.99 -5.02 17.00 16 16 H -0.26 -6.58 6.85 56.52 0.39 -6.19 16 17 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 18 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 19 C 0.07 1.11 1.59 -67.70 -0.11 1.00 16 20 C -0.15 -2.26 4.11 -26.73 -0.11 -2.37 16 21 C -0.12 -1.49 5.48 -26.75 -0.15 -1.64 16 22 C -0.13 -1.37 5.47 -26.74 -0.15 -1.52 16 23 C -0.12 -1.15 5.59 -26.73 -0.15 -1.30 16 24 C -0.13 -1.39 5.47 -26.73 -0.15 -1.53 16 25 C -0.12 -1.52 5.48 -26.74 -0.15 -1.66 16 26 C -0.11 -1.64 4.57 -26.73 -0.12 -1.77 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 29 H 0.08 1.30 6.52 -51.93 -0.34 0.96 16 30 H 0.14 2.16 8.06 -52.49 -0.42 1.73 16 31 H 0.14 2.55 8.06 -52.49 -0.42 2.13 16 32 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 33 H 0.03 0.60 6.47 -51.93 -0.34 0.26 16 34 H 0.06 0.98 7.19 -51.93 -0.37 0.61 16 35 H 0.00 -0.09 7.53 -51.93 -0.39 -0.48 16 36 H 0.03 0.72 6.13 -51.93 -0.32 0.40 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.09 1.25 2.62 -51.93 -0.14 1.11 16 39 H 0.07 1.16 7.35 -51.93 -0.38 0.78 16 40 H 0.06 0.91 6.40 -51.93 -0.33 0.58 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.84 4.69 -51.92 -0.24 0.60 16 43 H 0.07 0.84 5.47 -51.93 -0.28 0.55 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.57 7.47 -51.93 -0.39 0.19 16 47 H 0.08 0.90 5.47 -51.93 -0.28 0.61 16 48 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.07 0.81 4.69 -51.93 -0.24 0.56 16 51 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 52 H 0.06 1.10 6.62 -51.92 -0.34 0.76 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -28.84 370.39 -10.90 -39.75 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -8.51 Total: 3.81 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -2.67 Total: -20.05 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -0.29 Total: -46.10 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.84 -10.90 -39.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205850697.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.404 kcal (2) G-P(sol) polarization free energy of solvation -28.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds