Wall clock time and date at job start Tue Mar 31 2020 10:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38230 * 120.42049 * 2 1 4 4 N 1.31853 * 120.76260 * 180.26189 * 3 2 1 5 5 C 1.31884 * 121.72386 * 359.74496 * 4 3 2 6 6 C 1.38175 * 120.77102 * 359.97204 * 5 4 3 7 7 C 1.38627 * 120.41994 * 179.72528 * 2 1 3 8 8 C 1.50706 * 120.79045 * 0.02970 * 7 2 1 9 9 N 1.46894 * 109.47239 * 79.71468 * 8 7 2 10 10 C 1.46899 * 111.00172 * 66.04689 * 9 8 7 11 11 C 1.50702 * 109.47209 * 282.30525 * 10 9 8 12 12 H 1.07998 * 119.99846 * 354.62969 * 11 10 9 13 13 C 1.37877 * 119.99688 * 174.62642 * 11 10 9 14 14 N 1.31512 * 119.99914 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99607 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47255 * 60.00125 * 15 13 11 17 17 H 1.48508 * 109.46849 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47228 * 299.99998 * 15 13 11 19 19 C 1.46902 * 110.99915 * 190.00351 * 9 8 7 20 20 C 1.53009 * 109.47283 * 289.99186 * 19 9 8 21 21 C 1.52985 * 109.46400 * 164.04351 * 20 19 9 22 22 C 1.52985 * 109.51301 * 315.99327 * 21 20 19 23 23 C 1.53006 * 109.47175 * 112.93016 * 22 21 20 24 24 C 1.52999 * 109.43352 * 284.04726 * 23 22 21 25 25 C 1.52993 * 109.48927 * 75.95798 * 24 23 22 26 26 C 1.52993 * 109.50573 * 247.06509 * 25 24 23 27 27 H 1.08999 * 109.47371 * 270.27325 * 1 2 3 28 28 H 1.09001 * 109.46804 * 30.27592 * 1 2 3 29 29 H 1.08994 * 109.46690 * 150.26843 * 1 2 3 30 30 H 1.08002 * 119.61575 * 0.02562 * 3 2 1 31 31 H 1.08002 * 119.61492 * 180.02562 * 5 4 3 32 32 H 1.07995 * 120.42298 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47147 * 199.71414 * 8 7 2 34 34 H 1.09004 * 109.46415 * 319.71566 * 8 7 2 35 35 H 1.09000 * 109.47078 * 42.30938 * 10 9 8 36 36 H 1.09002 * 109.46815 * 162.30337 * 10 9 8 37 37 H 0.97007 * 119.99725 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.47224 * 49.99294 * 19 9 8 39 39 H 1.08998 * 109.47320 * 284.05013 * 20 19 9 40 40 H 1.09006 * 109.46994 * 44.05232 * 20 19 9 41 41 H 1.08997 * 109.46952 * 195.97912 * 21 20 19 42 42 H 1.09009 * 109.45603 * 75.99812 * 21 20 19 43 43 H 1.09000 * 109.46780 * 352.93603 * 22 21 20 44 44 H 1.08997 * 109.47520 * 232.93687 * 22 21 20 45 45 H 1.09000 * 109.47702 * 164.05825 * 23 22 21 46 46 H 1.09005 * 109.48192 * 44.03524 * 23 22 21 47 47 H 1.09003 * 109.47403 * 315.95490 * 24 23 22 48 48 H 1.08998 * 109.46978 * 195.96265 * 24 23 22 49 49 H 1.09004 * 109.46200 * 127.05048 * 25 24 23 50 50 H 1.09005 * 109.46004 * 7.07812 * 25 24 23 51 51 H 1.08997 * 109.47535 * 284.01443 * 26 25 24 52 52 H 1.09007 * 109.47215 * 164.00636 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0052 5 6 4.2256 0.0822 -0.0055 6 6 3.5948 -1.1471 0.0001 7 6 2.2089 -1.1954 0.0057 8 6 1.4832 -2.5162 0.0114 9 7 1.0312 -2.8324 -1.3501 10 6 2.1739 -3.0655 -2.2433 11 6 2.7789 -1.7436 -2.6404 12 1 2.3061 -0.8208 -2.3381 13 6 3.9360 -1.7123 -3.3895 14 7 4.5114 -2.8361 -3.7579 15 14 4.6863 -0.0738 -3.8812 16 1 5.0280 0.7002 -2.6608 17 1 5.9168 -0.3120 -4.6776 18 1 3.7102 0.6928 -4.6964 19 6 0.1208 -3.9853 -1.3481 20 6 0.9066 -5.2551 -1.0144 21 6 -0.0666 -6.3686 -0.6223 22 6 -1.1324 -5.8071 0.3207 23 6 -2.4932 -5.8259 -0.3786 24 6 -2.5595 -4.6835 -1.3941 25 6 -1.7385 -5.0520 -2.6313 26 6 -0.5209 -4.1308 -2.7295 27 1 -0.3634 0.0049 1.0276 28 1 -0.3633 0.8875 -0.5181 29 1 -0.3632 -0.8924 -0.5096 30 1 1.6675 2.1277 0.0004 31 1 5.3046 0.1284 -0.0094 32 1 4.1737 -2.0588 0.0002 33 1 2.1559 -3.2989 0.3619 34 1 0.6208 -2.4539 0.6753 35 1 2.9220 -3.6670 -1.7269 36 1 1.8361 -3.5931 -3.1353 37 1 5.3252 -2.8141 -4.2853 38 1 -0.6573 -3.8325 -0.6003 39 1 1.4822 -5.5659 -1.8862 40 1 1.5839 -5.0556 -0.1839 41 1 0.4787 -7.1673 -0.1196 42 1 -0.5460 -6.7638 -1.5180 43 1 -0.8762 -4.7823 0.5894 44 1 -1.1785 -6.4183 1.2220 45 1 -3.2838 -5.7009 0.3613 46 1 -2.6242 -6.7778 -0.8933 47 1 -2.1546 -3.7757 -0.9467 48 1 -3.5966 -4.5144 -1.6835 49 1 -2.3542 -4.9367 -3.5234 50 1 -1.4056 -6.0869 -2.5512 51 1 -0.8346 -3.1510 -3.0895 52 1 0.2032 -4.5582 -3.4233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205850697.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:36 Heat of formation + Delta-G solvation = 19.901228 kcal Electronic energy + Delta-G solvation = -28993.808476 eV Core-core repulsion = 25571.303495 eV Total energy + Delta-G solvation = -3422.504981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.38896 -40.52801 -37.58500 -34.76848 -34.47125 -33.67216 -33.06089 -31.81546 -29.43164 -28.25596 -27.25721 -26.69594 -25.54326 -24.09830 -23.26468 -22.34277 -21.86716 -21.32403 -19.59412 -18.57629 -17.44864 -17.35886 -16.94404 -16.55109 -16.10179 -15.81687 -15.32400 -15.03915 -15.03491 -14.89936 -14.73531 -14.56621 -14.15460 -14.07027 -13.87152 -13.52292 -13.40902 -13.19863 -13.08448 -12.98098 -12.84956 -12.54747 -12.44613 -12.37453 -12.10967 -12.01481 -11.95777 -11.79339 -11.72393 -11.56447 -11.31775 -11.08514 -10.67734 -10.59162 -10.49047 -10.19716 -9.95281 -9.50563 -8.88152 -8.12992 -6.12284 0.47557 0.60594 1.33431 1.35362 1.44626 2.40097 2.99951 3.22061 3.47491 3.74873 3.77494 3.92693 4.01510 4.06312 4.10249 4.26641 4.31477 4.32268 4.34668 4.37164 4.41025 4.45239 4.46249 4.63402 4.64899 4.79226 4.84724 4.92793 4.96026 5.01618 5.05107 5.08041 5.12466 5.13750 5.16110 5.22935 5.26881 5.32322 5.34583 5.37248 5.40687 5.44998 5.51556 5.53652 5.57513 5.70186 5.72406 5.75185 5.79782 6.08153 6.20022 6.44626 6.74668 6.99355 7.24772 7.51934 8.96485 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014293 B = 0.005177 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.505059 B = 5407.689690 C = 6364.012706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.123 4.123 3 C 0.070 3.930 4 N -0.511 5.511 5 C 0.065 3.935 6 C -0.125 4.125 7 C -0.013 4.013 8 C 0.106 3.894 9 N -0.525 5.525 10 C 0.217 3.783 11 C -0.475 4.475 12 H 0.057 0.943 13 C 0.020 3.980 14 N -0.933 5.933 15 Si 0.918 3.082 16 H -0.260 1.260 17 H -0.291 1.291 18 H -0.284 1.284 19 C 0.074 3.926 20 C -0.143 4.143 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.113 4.113 24 C -0.125 4.125 25 C -0.118 4.118 26 C -0.103 4.103 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.170 0.830 31 H 0.143 0.857 32 H 0.109 0.891 33 H 0.025 0.975 34 H 0.099 0.901 35 H -0.033 1.033 36 H 0.002 0.998 37 H 0.257 0.743 38 H 0.119 0.881 39 H 0.031 0.969 40 H 0.045 0.955 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.061 0.939 50 H 0.072 0.928 51 H 0.054 0.946 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.608 -3.923 10.214 18.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.126 4.126 3 C -0.088 4.088 4 N -0.221 5.221 5 C -0.090 4.090 6 C -0.145 4.145 7 C -0.021 4.021 8 C -0.022 4.022 9 N -0.248 5.248 10 C 0.091 3.909 11 C -0.514 4.514 12 H 0.075 0.925 13 C -0.177 4.177 14 N -0.575 5.575 15 Si 0.746 3.254 16 H -0.185 1.185 17 H -0.217 1.217 18 H -0.210 1.210 19 C -0.033 4.033 20 C -0.182 4.182 21 C -0.155 4.155 22 C -0.161 4.161 23 C -0.150 4.150 24 C -0.162 4.162 25 C -0.156 4.156 26 C -0.141 4.141 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.187 0.813 31 H 0.161 0.839 32 H 0.127 0.873 33 H 0.043 0.957 34 H 0.117 0.883 35 H -0.016 1.016 36 H 0.020 0.980 37 H 0.066 0.934 38 H 0.136 0.864 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.080 0.920 50 H 0.090 0.910 51 H 0.073 0.927 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -14.258 -2.775 9.932 17.597 hybrid contribution 1.757 -0.813 -0.856 2.117 sum -12.501 -3.588 9.076 15.859 Atomic orbital electron populations 1.20721 0.88437 1.03852 1.02890 1.20905 0.98863 0.92676 1.00111 1.22883 0.89625 0.98369 0.97912 1.67501 1.09511 1.31619 1.13454 1.22437 0.99913 0.88195 0.98479 1.21736 0.95494 0.98388 0.98902 1.19965 0.92872 0.95633 0.93670 1.20894 0.97986 0.91820 0.91451 1.62346 1.18151 1.37306 1.06979 1.19305 0.86427 0.94690 0.90524 1.21365 1.06692 0.93405 1.29908 0.92451 1.25354 0.97897 0.97587 0.96884 1.70037 1.20581 1.27147 1.39770 0.86201 0.77760 0.82469 0.78976 1.18484 1.21738 1.20987 1.22387 0.94973 0.87254 0.98670 1.22194 0.98604 0.97739 0.99655 1.21778 0.96705 0.96819 1.00169 1.21794 0.94702 1.01474 0.98170 1.21683 0.96625 0.98590 0.98141 1.21799 0.99890 0.99066 0.95442 1.21808 0.95455 0.99511 0.98778 1.21538 0.96994 0.99618 0.95911 0.89528 0.90909 0.90615 0.81338 0.83927 0.87307 0.95679 0.88335 1.01575 0.98004 0.93423 0.86414 0.95014 0.93615 0.92484 0.90697 0.91571 0.91313 0.90869 0.91520 0.91323 0.91224 0.91981 0.90980 0.92726 0.95109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.59 9.35 71.24 0.67 -1.93 16 2 C -0.12 -4.14 5.27 -19.77 -0.10 -4.24 16 3 C 0.07 2.42 10.86 84.69 0.92 3.34 16 4 N -0.51 -20.46 10.36 -195.84 -2.03 -22.49 16 5 C 0.06 2.64 10.93 84.67 0.93 3.56 16 6 C -0.12 -5.10 7.70 22.36 0.17 -4.92 16 7 C -0.01 -0.48 3.30 -19.67 -0.06 -0.54 16 8 C 0.11 3.61 3.85 85.56 0.33 3.94 16 9 N -0.53 -19.77 3.87 -880.01 -3.41 -23.18 16 10 C 0.22 10.61 3.38 85.56 0.29 10.90 16 11 C -0.47 -25.40 6.17 25.60 0.16 -25.24 16 12 H 0.06 3.13 6.04 -2.91 -0.02 3.11 16 13 C 0.02 1.13 5.46 84.65 0.46 1.59 16 14 N -0.93 -55.71 13.29 21.45 0.28 -55.43 16 15 Si 0.92 46.09 29.54 68.60 2.03 48.11 16 16 H -0.26 -12.85 6.85 99.48 0.68 -12.17 16 17 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 18 H -0.28 -14.30 7.11 99.48 0.71 -13.59 16 19 C 0.07 2.27 1.59 44.92 0.07 2.34 16 20 C -0.14 -4.40 4.11 30.59 0.13 -4.28 16 21 C -0.12 -2.67 5.48 30.58 0.17 -2.50 16 22 C -0.12 -2.27 5.47 30.59 0.17 -2.10 16 23 C -0.11 -1.77 5.59 30.60 0.17 -1.60 16 24 C -0.12 -2.28 5.47 30.59 0.17 -2.11 16 25 C -0.12 -2.67 5.48 30.59 0.17 -2.50 16 26 C -0.10 -3.19 4.57 30.60 0.14 -3.05 16 27 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 1.67 8.10 -2.39 -0.02 1.65 16 29 H 0.07 2.08 6.52 -2.39 -0.02 2.07 16 30 H 0.17 4.71 8.06 -2.91 -0.02 4.68 16 31 H 0.14 5.43 8.06 -2.91 -0.02 5.41 16 32 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 33 H 0.03 0.90 6.47 -2.39 -0.02 0.89 16 34 H 0.10 2.69 7.19 -2.39 -0.02 2.68 16 35 H -0.03 -1.83 7.53 -2.39 -0.02 -1.85 16 36 H 0.00 0.11 6.13 -2.39 -0.01 0.09 16 37 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 38 H 0.12 3.00 2.62 -2.39 -0.01 3.00 16 39 H 0.03 1.18 7.35 -2.39 -0.02 1.16 16 40 H 0.05 1.49 6.40 -2.38 -0.02 1.48 16 41 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.66 4.69 -2.38 -0.01 1.65 16 43 H 0.07 1.30 5.47 -2.39 -0.01 1.29 16 44 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.07 1.00 7.47 -2.38 -0.02 0.98 16 47 H 0.07 1.37 5.47 -2.39 -0.01 1.36 16 48 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 50 H 0.07 1.58 4.69 -2.38 -0.01 1.57 16 51 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 52 H 0.03 1.13 6.62 -2.38 -0.02 1.12 16 Total: -1.00 -64.44 370.39 2.69 -61.75 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.88 Total: 20.57 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: 4.93 Total: -29.34 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -5.15 Total: -101.10 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -64.44 2.69 -61.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205850697.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.655 kcal (2) G-P(sol) polarization free energy of solvation -64.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds