Wall clock time and date at job start Tue Mar 31 2020 10:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38677 * 120.78290 * 2 1 4 4 C 1.38188 * 119.15840 * 180.02562 * 3 2 1 5 5 N 1.31883 * 120.76604 * 359.74968 * 4 3 2 6 6 C 1.31859 * 121.72654 * 0.51764 * 5 4 3 7 7 C 1.50699 * 119.61913 * 179.75820 * 6 5 4 8 8 N 1.46903 * 109.46677 * 274.72824 * 7 6 5 9 9 C 1.46905 * 110.99953 * 284.04711 * 8 7 6 10 10 C 1.50694 * 109.47313 * 164.28178 * 9 8 7 11 11 H 1.08007 * 119.99556 * 356.78565 * 10 9 8 12 12 C 1.37878 * 120.00359 * 176.78312 * 10 9 8 13 13 N 1.31508 * 119.99878 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99520 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.46998 * 270.00026 * 14 12 10 16 16 H 1.48491 * 109.47361 * 30.00335 * 14 12 10 17 17 H 1.48508 * 109.46788 * 150.00407 * 14 12 10 18 18 C 1.46903 * 110.99548 * 160.10069 * 8 7 6 19 19 C 1.53009 * 109.47614 * 52.88442 * 18 8 7 20 20 C 1.52981 * 109.46278 * 164.04575 * 19 18 8 21 21 C 1.52983 * 109.51142 * 315.98636 * 20 19 18 22 22 C 1.53007 * 109.47157 * 112.93706 * 21 20 19 23 23 C 1.53014 * 109.43000 * 284.04340 * 22 21 20 24 24 C 1.52985 * 109.48411 * 75.95871 * 23 22 21 25 25 C 1.52989 * 109.50925 * 247.06369 * 24 23 22 26 26 C 1.38232 * 120.76092 * 359.47850 * 6 5 4 27 27 H 1.09000 * 109.47249 * 269.97541 * 1 2 3 28 28 H 1.08999 * 109.47004 * 29.98031 * 1 2 3 29 29 H 1.09004 * 109.46765 * 149.98122 * 1 2 3 30 30 H 1.07994 * 120.42320 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.61290 * 180.02562 * 4 3 2 32 32 H 1.08992 * 109.46993 * 154.72799 * 7 6 5 33 33 H 1.08996 * 109.47086 * 34.72141 * 7 6 5 34 34 H 1.09000 * 109.46775 * 44.28390 * 9 8 7 35 35 H 1.08996 * 109.47396 * 284.28973 * 9 8 7 36 36 H 0.97008 * 119.99440 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.46624 * 172.88427 * 18 8 7 38 38 H 1.09003 * 109.46980 * 284.04240 * 19 18 8 39 39 H 1.08997 * 109.47172 * 44.04311 * 19 18 8 40 40 H 1.09004 * 109.46923 * 195.97462 * 20 19 18 41 41 H 1.09000 * 109.45974 * 75.99386 * 20 19 18 42 42 H 1.09000 * 109.47062 * 352.93806 * 21 20 19 43 43 H 1.09006 * 109.47160 * 232.93735 * 21 20 19 44 44 H 1.09003 * 109.48152 * 164.06075 * 22 21 20 45 45 H 1.08998 * 109.48571 * 44.03268 * 22 21 20 46 46 H 1.09005 * 109.46729 * 315.95952 * 23 22 21 47 47 H 1.09000 * 109.46274 * 195.96607 * 23 22 21 48 48 H 1.09001 * 109.45863 * 127.05164 * 24 23 22 49 49 H 1.09002 * 109.46359 * 7.07824 * 24 23 22 50 50 H 1.08998 * 109.47706 * 284.01956 * 25 24 23 51 51 H 1.09001 * 109.47774 * 164.00958 * 25 24 23 52 52 H 1.07995 * 120.41795 * 180.27458 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1914 0.0000 4 6 3.5981 1.1522 -0.0005 5 7 4.2403 0.0003 0.0039 6 6 3.5984 -1.1515 -0.0011 7 6 4.3802 -2.4398 -0.0012 8 7 4.7369 -2.7959 -1.3811 9 6 3.5770 -3.3378 -2.1015 10 6 3.8567 -3.3298 -3.5823 11 1 4.7800 -2.9114 -3.9551 12 6 2.9340 -3.8564 -4.4611 13 7 3.1784 -3.8497 -5.7533 14 14 1.3368 -4.5792 -3.8162 15 1 1.5255 -6.0253 -3.5360 16 1 0.9461 -3.8796 -2.5660 17 1 0.2692 -4.4074 -4.8341 18 6 5.8612 -3.7411 -1.4069 19 6 5.5415 -4.9387 -0.5099 20 6 6.4989 -6.0874 -0.8328 21 6 6.6344 -6.2283 -2.3501 22 6 8.0574 -5.8564 -2.7719 23 6 8.2173 -4.3350 -2.7371 24 6 8.3533 -3.8692 -1.2863 25 6 7.1247 -3.0447 -0.8971 26 6 2.2167 -1.1908 -0.0005 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8899 -0.5142 30 1 1.6966 2.1378 -0.0004 31 1 4.1582 2.0757 -0.0001 32 1 3.7727 -3.2335 0.4334 33 1 5.2886 -2.3136 0.5877 34 1 2.7009 -2.7234 -1.8939 35 1 3.3900 -4.3600 -1.7726 36 1 2.5293 -4.2206 -6.3715 37 1 6.0231 -4.0852 -2.4284 38 1 5.6582 -4.6513 0.5351 39 1 4.5152 -5.2607 -0.6857 40 1 6.1072 -7.0151 -0.4155 41 1 7.4766 -5.8782 -0.3988 42 1 5.9242 -5.5633 -2.8416 43 1 6.4274 -7.2587 -2.6393 44 1 8.2432 -6.2183 -3.7831 45 1 8.7709 -6.3126 -2.0857 46 1 7.3422 -3.8673 -3.1883 47 1 9.1095 -4.0508 -3.2951 48 1 9.2491 -3.2567 -1.1839 49 1 8.4302 -4.7374 -0.6317 50 1 7.1973 -2.0523 -1.3420 51 1 7.0768 -2.9539 0.1880 52 1 1.6966 -2.1373 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206852930.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:29 Heat of formation + Delta-G solvation = 33.532499 kcal Electronic energy + Delta-G solvation = -28397.124705 eV Core-core repulsion = 24975.210820 eV Total energy + Delta-G solvation = -3421.913885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.12795 -39.32561 -36.08533 -33.71688 -32.64036 -32.39592 -31.94238 -30.53586 -27.96397 -27.66866 -26.09399 -25.49349 -24.14349 -22.77647 -21.55857 -21.37397 -20.39742 -19.98627 -18.18921 -16.75595 -16.25885 -16.06222 -15.80848 -15.31924 -14.75990 -14.33945 -14.23798 -13.80431 -13.76210 -13.67743 -13.40681 -13.14316 -12.89079 -12.74834 -12.58403 -12.46244 -12.38188 -12.25076 -11.89645 -11.70205 -11.36655 -11.23275 -10.96918 -10.85210 -10.78911 -10.63527 -10.59486 -10.28441 -10.09151 -9.96116 -9.84457 -9.36314 -9.29757 -9.27124 -9.13133 -9.04706 -8.62819 -8.54713 -7.27137 -6.03542 -3.99070 1.44290 1.57256 3.25428 3.33809 3.34026 4.03844 4.41679 4.65280 4.80498 4.89417 4.96837 5.04247 5.23854 5.28534 5.30552 5.33454 5.39953 5.41733 5.53671 5.56248 5.59840 5.63555 5.65695 5.69075 5.76342 5.77638 5.89437 5.94168 6.04582 6.06195 6.13919 6.19998 6.27068 6.29031 6.35505 6.38718 6.42255 6.47162 6.53558 6.55635 6.58791 6.63132 6.72474 6.80052 6.85588 6.92685 7.03724 7.08898 7.22531 7.66889 7.95937 8.11352 8.41559 8.69606 9.07499 9.59152 11.09679 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010346 B = 0.005682 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.800186 B = 4926.696730 C = 6653.291662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.045 4.045 3 C -0.187 4.187 4 C 0.100 3.900 5 N -0.471 5.471 6 C 0.161 3.839 7 C 0.097 3.903 8 N -0.510 5.510 9 C 0.156 3.844 10 C -0.500 4.500 11 H 0.080 0.920 12 C 0.070 3.930 13 N -0.899 5.899 14 Si 0.868 3.132 15 H -0.277 1.277 16 H -0.269 1.269 17 H -0.287 1.287 18 C 0.074 3.926 19 C -0.152 4.152 20 C -0.117 4.117 21 C -0.137 4.137 22 C -0.113 4.113 23 C -0.133 4.133 24 C -0.121 4.121 25 C -0.109 4.109 26 C -0.164 4.164 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.127 0.873 31 H 0.150 0.850 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.027 0.973 35 H -0.011 1.011 36 H 0.262 0.738 37 H 0.124 0.876 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.051 0.949 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.086 0.914 47 H 0.052 0.948 48 H 0.052 0.948 49 H 0.066 0.934 50 H 0.071 0.929 51 H 0.050 0.950 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.390 2.212 13.192 13.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.053 4.053 3 C -0.207 4.207 4 C -0.057 4.057 5 N -0.181 5.181 6 C 0.022 3.978 7 C -0.032 4.032 8 N -0.232 5.232 9 C 0.030 3.970 10 C -0.539 4.539 11 H 0.098 0.902 12 C -0.131 4.131 13 N -0.538 5.538 14 Si 0.695 3.305 15 H -0.203 1.203 16 H -0.194 1.194 17 H -0.213 1.213 18 C -0.033 4.033 19 C -0.191 4.191 20 C -0.155 4.155 21 C -0.174 4.174 22 C -0.150 4.150 23 C -0.170 4.170 24 C -0.159 4.159 25 C -0.147 4.147 26 C -0.185 4.185 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.145 0.855 31 H 0.167 0.833 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.045 0.955 35 H 0.007 0.993 36 H 0.072 0.928 37 H 0.142 0.858 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.111 0.889 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.105 0.895 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.084 0.916 50 H 0.090 0.910 51 H 0.068 0.932 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.357 2.592 12.771 13.457 hybrid contribution -2.298 -1.111 0.546 2.610 sum 1.059 1.481 13.317 13.441 Atomic orbital electron populations 1.20802 0.90740 1.03317 1.02298 1.20240 0.96447 0.93091 0.95563 1.21908 0.95796 0.98168 1.04803 1.22662 0.91569 0.96159 0.95317 1.67470 1.41030 0.97843 1.11724 1.21192 0.90543 0.93886 0.92135 1.20959 0.98334 0.90667 0.93237 1.62136 1.08379 1.42746 1.09938 1.20310 0.88990 0.92463 0.95276 1.20986 1.06076 1.38528 0.88261 0.90152 1.24857 0.97680 0.95836 0.94750 1.69890 1.35865 1.46507 1.01562 0.86977 0.84585 0.79908 0.79001 1.20336 1.19364 1.21268 1.22322 0.89913 0.89174 1.01940 1.22339 0.99962 0.97329 0.99450 1.21738 0.99726 0.97554 0.96485 1.21903 0.97843 1.01639 0.96007 1.21641 0.96694 0.96087 1.00585 1.21868 1.02586 0.95838 0.96733 1.21805 0.97577 0.99670 0.96845 1.21662 0.93809 0.99685 0.99544 1.21882 0.95222 0.98513 1.02838 0.90959 0.91203 0.91084 0.85485 0.83266 0.94210 0.89839 0.95549 0.99341 0.92794 0.85836 0.92975 0.91906 0.93320 0.91379 0.88933 0.92990 0.92578 0.92760 0.89545 0.92933 0.92951 0.91554 0.91047 0.93162 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.06 36.01 0.36 -0.95 16 2 C -0.05 -0.67 5.92 -104.32 -0.62 -1.29 16 3 C -0.19 -2.55 9.82 -39.44 -0.39 -2.94 16 4 C 0.10 1.50 11.18 -17.55 -0.20 1.30 16 5 N -0.47 -8.44 10.27 -9.47 -0.10 -8.53 16 6 C 0.16 2.91 5.98 -82.58 -0.49 2.42 16 7 C 0.10 1.71 4.03 -4.97 -0.02 1.69 16 8 N -0.51 -10.42 4.31 -229.51 -0.99 -11.41 16 9 C 0.16 3.66 3.51 -4.98 -0.02 3.64 16 10 C -0.50 -13.84 8.94 -34.44 -0.31 -14.15 16 11 H 0.08 2.46 7.92 -52.48 -0.42 2.04 16 12 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 13 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 14 Si 0.87 21.26 27.40 -169.99 -4.66 16.60 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.27 -6.29 6.63 56.52 0.37 -5.92 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 C 0.07 1.33 1.49 -67.70 -0.10 1.23 16 19 C -0.15 -2.44 4.03 -26.74 -0.11 -2.55 16 20 C -0.12 -1.68 5.48 -26.75 -0.15 -1.83 16 21 C -0.14 -2.16 5.47 -26.74 -0.15 -2.30 16 22 C -0.11 -1.59 5.59 -26.72 -0.15 -1.74 16 23 C -0.13 -1.99 5.47 -26.73 -0.15 -2.14 16 24 C -0.12 -1.67 5.48 -26.74 -0.15 -1.81 16 25 C -0.11 -1.72 4.60 -26.73 -0.12 -1.85 16 26 C -0.16 -2.77 8.08 -39.44 -0.32 -3.09 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 30 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.15 1.76 8.06 -52.49 -0.42 1.33 16 32 H 0.04 0.67 7.50 -51.93 -0.39 0.28 16 33 H 0.08 1.38 6.23 -51.93 -0.32 1.06 16 34 H 0.03 0.64 5.30 -51.93 -0.28 0.37 16 35 H -0.01 -0.26 5.42 -51.93 -0.28 -0.54 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 37 H 0.12 2.52 1.83 -51.93 -0.10 2.42 16 38 H 0.05 0.76 7.34 -51.93 -0.38 0.38 16 39 H 0.06 1.12 6.18 -51.93 -0.32 0.80 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.89 4.69 -51.93 -0.24 0.65 16 42 H 0.09 1.80 5.47 -51.93 -0.28 1.51 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.05 0.68 7.47 -51.93 -0.39 0.29 16 46 H 0.09 1.57 5.47 -51.93 -0.28 1.28 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.07 0.85 4.69 -51.93 -0.24 0.61 16 50 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 51 H 0.05 0.74 6.67 -51.93 -0.35 0.39 16 52 H 0.13 2.08 7.83 -52.49 -0.41 1.67 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -30.50 375.04 -10.97 -41.48 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -8.49 Total: 7.06 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -3.16 Total: -24.46 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.31 Total: -46.33 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.66 Total: 16.60 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.50 -10.97 -41.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206852930.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.009 kcal (2) G-P(sol) polarization free energy of solvation -30.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds