Wall clock time and date at job start Tue Mar 31 2020 10:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38677 * 120.78290 * 2 1 4 4 C 1.38188 * 119.15840 * 180.02562 * 3 2 1 5 5 N 1.31883 * 120.76604 * 359.74968 * 4 3 2 6 6 C 1.31859 * 121.72654 * 0.51764 * 5 4 3 7 7 C 1.50699 * 119.61913 * 179.75820 * 6 5 4 8 8 N 1.46903 * 109.46677 * 274.72824 * 7 6 5 9 9 C 1.46905 * 110.99953 * 284.04711 * 8 7 6 10 10 C 1.50694 * 109.47313 * 164.28178 * 9 8 7 11 11 H 1.08007 * 119.99556 * 356.78565 * 10 9 8 12 12 C 1.37878 * 120.00359 * 176.78312 * 10 9 8 13 13 N 1.31508 * 119.99878 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99520 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.46998 * 270.00026 * 14 12 10 16 16 H 1.48491 * 109.47361 * 30.00335 * 14 12 10 17 17 H 1.48508 * 109.46788 * 150.00407 * 14 12 10 18 18 C 1.46903 * 110.99548 * 160.10069 * 8 7 6 19 19 C 1.53009 * 109.47614 * 52.88442 * 18 8 7 20 20 C 1.52981 * 109.46278 * 164.04575 * 19 18 8 21 21 C 1.52983 * 109.51142 * 315.98636 * 20 19 18 22 22 C 1.53007 * 109.47157 * 112.93706 * 21 20 19 23 23 C 1.53014 * 109.43000 * 284.04340 * 22 21 20 24 24 C 1.52985 * 109.48411 * 75.95871 * 23 22 21 25 25 C 1.52989 * 109.50925 * 247.06369 * 24 23 22 26 26 C 1.38232 * 120.76092 * 359.47850 * 6 5 4 27 27 H 1.09000 * 109.47249 * 269.97541 * 1 2 3 28 28 H 1.08999 * 109.47004 * 29.98031 * 1 2 3 29 29 H 1.09004 * 109.46765 * 149.98122 * 1 2 3 30 30 H 1.07994 * 120.42320 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.61290 * 180.02562 * 4 3 2 32 32 H 1.08992 * 109.46993 * 154.72799 * 7 6 5 33 33 H 1.08996 * 109.47086 * 34.72141 * 7 6 5 34 34 H 1.09000 * 109.46775 * 44.28390 * 9 8 7 35 35 H 1.08996 * 109.47396 * 284.28973 * 9 8 7 36 36 H 0.97008 * 119.99440 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.46624 * 172.88427 * 18 8 7 38 38 H 1.09003 * 109.46980 * 284.04240 * 19 18 8 39 39 H 1.08997 * 109.47172 * 44.04311 * 19 18 8 40 40 H 1.09004 * 109.46923 * 195.97462 * 20 19 18 41 41 H 1.09000 * 109.45974 * 75.99386 * 20 19 18 42 42 H 1.09000 * 109.47062 * 352.93806 * 21 20 19 43 43 H 1.09006 * 109.47160 * 232.93735 * 21 20 19 44 44 H 1.09003 * 109.48152 * 164.06075 * 22 21 20 45 45 H 1.08998 * 109.48571 * 44.03268 * 22 21 20 46 46 H 1.09005 * 109.46729 * 315.95952 * 23 22 21 47 47 H 1.09000 * 109.46274 * 195.96607 * 23 22 21 48 48 H 1.09001 * 109.45863 * 127.05164 * 24 23 22 49 49 H 1.09002 * 109.46359 * 7.07824 * 24 23 22 50 50 H 1.08998 * 109.47706 * 284.01956 * 25 24 23 51 51 H 1.09001 * 109.47774 * 164.00958 * 25 24 23 52 52 H 1.07995 * 120.41795 * 180.27458 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1914 0.0000 4 6 3.5981 1.1522 -0.0005 5 7 4.2403 0.0003 0.0039 6 6 3.5984 -1.1515 -0.0011 7 6 4.3802 -2.4398 -0.0012 8 7 4.7369 -2.7959 -1.3811 9 6 3.5770 -3.3378 -2.1015 10 6 3.8567 -3.3298 -3.5823 11 1 4.7800 -2.9114 -3.9551 12 6 2.9340 -3.8564 -4.4611 13 7 3.1784 -3.8497 -5.7533 14 14 1.3368 -4.5792 -3.8162 15 1 1.5255 -6.0253 -3.5360 16 1 0.9461 -3.8796 -2.5660 17 1 0.2692 -4.4074 -4.8341 18 6 5.8612 -3.7411 -1.4069 19 6 5.5415 -4.9387 -0.5099 20 6 6.4989 -6.0874 -0.8328 21 6 6.6344 -6.2283 -2.3501 22 6 8.0574 -5.8564 -2.7719 23 6 8.2173 -4.3350 -2.7371 24 6 8.3533 -3.8692 -1.2863 25 6 7.1247 -3.0447 -0.8971 26 6 2.2167 -1.1908 -0.0005 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8899 -0.5142 30 1 1.6966 2.1378 -0.0004 31 1 4.1582 2.0757 -0.0001 32 1 3.7727 -3.2335 0.4334 33 1 5.2886 -2.3136 0.5877 34 1 2.7009 -2.7234 -1.8939 35 1 3.3900 -4.3600 -1.7726 36 1 2.5293 -4.2206 -6.3715 37 1 6.0231 -4.0852 -2.4284 38 1 5.6582 -4.6513 0.5351 39 1 4.5152 -5.2607 -0.6857 40 1 6.1072 -7.0151 -0.4155 41 1 7.4766 -5.8782 -0.3988 42 1 5.9242 -5.5633 -2.8416 43 1 6.4274 -7.2587 -2.6393 44 1 8.2432 -6.2183 -3.7831 45 1 8.7709 -6.3126 -2.0857 46 1 7.3422 -3.8673 -3.1883 47 1 9.1095 -4.0508 -3.2951 48 1 9.2491 -3.2567 -1.1839 49 1 8.4302 -4.7374 -0.6317 50 1 7.1973 -2.0523 -1.3420 51 1 7.0768 -2.9539 0.1880 52 1 1.6966 -2.1373 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206852930.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:28 Heat of formation + Delta-G solvation = 15.980164 kcal Electronic energy + Delta-G solvation = -28397.885831 eV Core-core repulsion = 24975.210820 eV Total energy + Delta-G solvation = -3422.675012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.39587 -40.60509 -37.51706 -34.93784 -34.63786 -33.64980 -33.19346 -32.04326 -29.72586 -28.69766 -27.39066 -26.80593 -25.74452 -23.96176 -23.20667 -22.69112 -21.63187 -21.29916 -19.59262 -18.83498 -17.55937 -17.36987 -17.02093 -16.64486 -16.35547 -15.90459 -15.60345 -15.11290 -15.02471 -14.91390 -14.82480 -14.58552 -14.38646 -14.08391 -13.92815 -13.65302 -13.61482 -13.43352 -13.31086 -13.19857 -12.65929 -12.60840 -12.57967 -12.30724 -12.21295 -12.01081 -11.89540 -11.82855 -11.63444 -11.55257 -11.37096 -11.17731 -10.78490 -10.63946 -10.50153 -10.34679 -10.26111 -9.85137 -8.84668 -8.26267 -6.26483 0.24211 0.40653 1.28861 1.30159 1.40466 2.32410 2.79677 3.07517 3.42386 3.47631 3.74909 3.80086 3.89594 4.00977 4.07763 4.16912 4.21754 4.27777 4.31679 4.37735 4.42189 4.42814 4.49309 4.50950 4.59072 4.63545 4.72794 4.77085 4.80556 4.85709 4.91031 4.94389 5.02528 5.05314 5.08374 5.09202 5.13435 5.23152 5.23562 5.26321 5.33517 5.35172 5.40615 5.43388 5.50289 5.56063 5.60682 5.76438 5.80263 5.88518 6.09616 6.53102 6.71412 6.79033 7.19975 7.35750 8.90663 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010346 B = 0.005682 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.800186 B = 4926.696730 C = 6653.291662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.052 4.052 3 C -0.180 4.180 4 C 0.088 3.912 5 N -0.501 5.501 6 C 0.134 3.866 7 C 0.103 3.897 8 N -0.529 5.529 9 C 0.174 3.826 10 C -0.498 4.498 11 H 0.032 0.968 12 C 0.012 3.988 13 N -0.947 5.947 14 Si 0.934 3.066 15 H -0.268 1.268 16 H -0.250 1.250 17 H -0.283 1.283 18 C 0.071 3.929 19 C -0.145 4.145 20 C -0.110 4.110 21 C -0.136 4.136 22 C -0.108 4.108 23 C -0.132 4.132 24 C -0.113 4.113 25 C -0.100 4.100 26 C -0.185 4.185 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.165 0.835 31 H 0.178 0.822 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.021 0.979 35 H -0.009 1.009 36 H 0.264 0.736 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.040 0.960 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.047 0.953 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.084 0.916 46 H 0.043 0.957 47 H 0.062 0.938 48 H 0.070 0.930 49 H 0.087 0.913 50 H 0.044 0.956 51 H 0.067 0.933 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.936 2.208 16.051 16.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.060 4.060 3 C -0.200 4.200 4 C -0.069 4.069 5 N -0.212 5.212 6 C -0.004 4.004 7 C -0.025 4.025 8 N -0.251 5.251 9 C 0.047 3.953 10 C -0.536 4.536 11 H 0.050 0.950 12 C -0.185 4.185 13 N -0.588 5.588 14 Si 0.758 3.242 15 H -0.193 1.193 16 H -0.174 1.174 17 H -0.208 1.208 18 C -0.036 4.036 19 C -0.184 4.184 20 C -0.148 4.148 21 C -0.174 4.174 22 C -0.145 4.145 23 C -0.169 4.169 24 C -0.150 4.150 25 C -0.138 4.138 26 C -0.206 4.206 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.182 0.818 31 H 0.195 0.805 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.039 0.961 35 H 0.008 0.992 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.103 0.897 46 H 0.061 0.939 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.105 0.895 50 H 0.063 0.937 51 H 0.085 0.915 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.915 2.590 15.654 16.132 hybrid contribution -2.093 -0.972 -0.401 2.342 sum 0.822 1.618 15.253 15.361 Atomic orbital electron populations 1.20871 0.88304 1.03812 1.03908 1.20701 0.98313 0.92663 0.94303 1.22319 0.95405 0.99411 1.02833 1.23246 0.92791 0.96263 0.94570 1.67435 1.42122 0.98664 1.12936 1.21262 0.91256 0.94065 0.93819 1.20933 0.98993 0.91140 0.91415 1.62005 1.07744 1.43505 1.11891 1.19945 0.90131 0.92446 0.92796 1.21138 1.04130 1.37468 0.90908 0.94989 1.25712 1.01607 0.96387 0.94793 1.70052 1.37451 1.48190 1.03119 0.85909 0.79728 0.79529 0.79060 1.19281 1.17378 1.20850 1.22323 0.90076 0.89918 1.01295 1.22250 0.99181 0.97022 0.99972 1.21720 1.00424 0.97455 0.95168 1.21845 0.97804 1.00651 0.97072 1.21627 0.96262 0.95427 1.01172 1.21811 1.01014 0.96369 0.97730 1.21773 0.97033 1.00294 0.95902 1.21571 0.93697 0.98436 1.00121 1.22005 0.95038 0.99532 1.03992 0.88682 0.89426 0.91845 0.81787 0.80489 0.93405 0.88899 0.96070 0.99164 0.92708 0.88651 0.90905 0.94106 0.91750 0.89150 0.93479 0.92573 0.93035 0.89715 0.93852 0.91929 0.91153 0.89505 0.93685 0.91457 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.27 10.06 71.24 0.72 -1.55 16 2 C -0.05 -1.43 5.92 -19.67 -0.12 -1.55 16 3 C -0.18 -4.48 9.82 22.36 0.22 -4.27 16 4 C 0.09 2.51 11.18 84.67 0.95 3.46 16 5 N -0.50 -17.89 10.27 -183.88 -1.89 -19.78 16 6 C 0.13 4.85 5.98 42.55 0.25 5.11 16 7 C 0.10 3.68 4.03 85.56 0.34 4.03 16 8 N -0.53 -22.43 4.31 -880.03 -3.79 -26.22 16 9 C 0.17 8.46 3.51 85.55 0.30 8.76 16 10 C -0.50 -29.25 8.94 25.60 0.23 -29.02 16 11 H 0.03 2.13 7.92 -2.91 -0.02 2.11 16 12 C 0.01 0.71 5.47 84.66 0.46 1.17 16 13 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 14 Si 0.93 44.68 27.40 68.60 1.88 46.56 16 15 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.25 -11.11 6.63 99.48 0.66 -10.45 16 17 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 18 C 0.07 2.64 1.49 44.92 0.07 2.71 16 19 C -0.15 -4.58 4.03 30.59 0.12 -4.46 16 20 C -0.11 -2.96 5.48 30.58 0.17 -2.79 16 21 C -0.14 -4.33 5.47 30.59 0.17 -4.16 16 22 C -0.11 -2.97 5.59 30.60 0.17 -2.80 16 23 C -0.13 -3.99 5.47 30.59 0.17 -3.83 16 24 C -0.11 -2.92 5.48 30.59 0.17 -2.75 16 25 C -0.10 -3.16 4.60 30.59 0.14 -3.02 16 26 C -0.19 -6.17 8.08 22.36 0.18 -5.99 16 27 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.09 1.45 8.10 -2.39 -0.02 1.43 16 29 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 30 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 31 H 0.18 3.80 8.06 -2.91 -0.02 3.78 16 32 H 0.05 1.59 7.50 -2.39 -0.02 1.58 16 33 H 0.09 3.05 6.23 -2.39 -0.01 3.03 16 34 H 0.02 1.06 5.30 -2.39 -0.01 1.04 16 35 H -0.01 -0.44 5.42 -2.39 -0.01 -0.45 16 36 H 0.26 15.67 8.31 -92.70 -0.77 14.90 16 37 H 0.10 4.19 1.83 -2.39 0.00 4.19 16 38 H 0.07 1.98 7.34 -2.39 -0.02 1.96 16 39 H 0.04 1.46 6.18 -2.39 -0.01 1.44 16 40 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.09 2.03 4.69 -2.39 -0.01 2.02 16 42 H 0.05 1.95 5.47 -2.39 -0.01 1.94 16 43 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 44 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.08 1.85 7.47 -2.39 -0.02 1.83 16 46 H 0.04 1.71 5.47 -2.38 -0.01 1.70 16 47 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.09 1.91 4.69 -2.39 -0.01 1.90 16 50 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.07 1.87 6.67 -2.39 -0.02 1.86 16 52 H 0.13 4.06 7.83 -2.91 -0.02 4.04 16 Total: -1.00 -71.39 375.04 2.06 -69.32 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.86 Total: 30.79 kcal Atomic # 6 Polarization: -45.66 SS G_CDS: 4.71 Total: -40.95 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -5.38 Total: -105.72 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.56 kcal Total: -71.39 2.06 -69.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206852930.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.302 kcal (2) G-P(sol) polarization free energy of solvation -71.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds