Wall clock time and date at job start Tue Mar 31 2020 10:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31886 * 119.62055 * 2 1 4 4 C 1.31851 * 121.72818 * 180.02562 * 3 2 1 5 5 C 1.38233 * 120.76260 * 359.97438 * 4 3 2 6 6 C 1.38622 * 119.15804 * 359.72544 * 5 4 3 7 7 C 1.38186 * 119.61721 * 179.97438 * 2 1 3 8 8 C 1.50694 * 120.41693 * 359.97300 * 7 2 1 9 9 N 1.46900 * 109.47253 * 286.32228 * 8 7 2 10 10 C 1.46896 * 110.99910 * 294.66401 * 9 8 7 11 11 C 1.50698 * 109.47329 * 294.06948 * 10 9 8 12 12 H 1.08011 * 119.99603 * 5.05948 * 11 10 9 13 13 C 1.37876 * 120.00494 * 185.05856 * 11 10 9 14 14 N 1.31511 * 119.99863 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00029 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47357 * 60.00174 * 15 13 11 17 17 H 1.48499 * 109.47184 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47184 * 299.99677 * 15 13 11 19 19 C 1.46898 * 111.00311 * 170.70784 * 9 8 7 20 20 C 1.53018 * 109.47025 * 295.46713 * 19 9 8 21 21 C 1.52991 * 109.45856 * 164.04464 * 20 19 9 22 22 C 1.52985 * 109.51125 * 315.98755 * 21 20 19 23 23 C 1.53011 * 109.46726 * 112.93893 * 22 21 20 24 24 C 1.53005 * 109.42927 * 284.04152 * 23 22 21 25 25 C 1.52986 * 109.48491 * 75.96315 * 24 23 22 26 26 C 1.52998 * 109.50840 * 247.06293 * 25 24 23 27 27 H 1.09008 * 109.46742 * 274.55931 * 1 2 3 28 28 H 1.09003 * 109.47450 * 34.55232 * 1 2 3 29 29 H 1.08994 * 109.47264 * 154.55567 * 1 2 3 30 30 H 1.08002 * 119.62303 * 179.97438 * 4 3 2 31 31 H 1.08001 * 120.41708 * 180.02562 * 5 4 3 32 32 H 1.08002 * 120.78384 * 180.27449 * 6 5 4 33 33 H 1.09001 * 109.47239 * 166.32064 * 8 7 2 34 34 H 1.09007 * 109.47320 * 46.31847 * 8 7 2 35 35 H 1.09001 * 109.47383 * 54.07222 * 10 9 8 36 36 H 1.09011 * 109.47319 * 174.07408 * 10 9 8 37 37 H 0.96996 * 120.00084 * 179.97438 * 14 13 11 38 38 H 1.08997 * 109.47133 * 55.46707 * 19 9 8 39 39 H 1.08995 * 109.47462 * 284.03861 * 20 19 9 40 40 H 1.08997 * 109.47167 * 44.04933 * 20 19 9 41 41 H 1.09001 * 109.46268 * 195.97927 * 21 20 19 42 42 H 1.09001 * 109.46052 * 75.99526 * 21 20 19 43 43 H 1.08996 * 109.47134 * 352.93947 * 22 21 20 44 44 H 1.09004 * 109.47256 * 232.93255 * 22 21 20 45 45 H 1.09006 * 109.47534 * 164.05871 * 23 22 21 46 46 H 1.08996 * 109.48730 * 44.03286 * 23 22 21 47 47 H 1.09002 * 109.47361 * 315.96008 * 24 23 22 48 48 H 1.09002 * 109.46515 * 195.96876 * 24 23 22 49 49 H 1.08997 * 109.46194 * 127.05236 * 25 24 23 50 50 H 1.09000 * 109.46445 * 7.07684 * 25 24 23 51 51 H 1.09003 * 109.47196 * 284.01869 * 26 25 24 52 52 H 1.08991 * 109.47573 * 164.00628 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4764 1.1950 -0.0005 5 6 4.2267 0.0340 -0.0005 6 6 3.5765 -1.1903 0.0058 7 6 2.1899 -1.2013 0.0005 8 6 1.4372 -2.5068 0.0017 9 7 0.8559 -2.7357 1.3313 10 6 1.9071 -2.9206 2.3406 11 6 2.6618 -4.1928 2.0527 12 1 2.4429 -4.7603 1.1602 13 6 3.6318 -4.6323 2.9286 14 7 3.8979 -3.9415 4.0155 15 14 4.5677 -6.2089 2.5712 16 1 5.2857 -6.0762 1.2781 17 1 5.5476 -6.4601 3.6584 18 1 3.6136 -7.3442 2.4935 19 6 -0.0642 -3.8807 1.3136 20 6 -1.2568 -3.5628 0.4091 21 6 -1.9984 -4.8571 0.0698 22 6 -0.9861 -5.9488 -0.2824 23 6 -1.0183 -7.0393 0.7905 24 6 -0.2909 -6.5437 2.0420 25 6 -1.1838 -5.5540 2.7928 26 6 -0.5610 -4.1578 2.7341 27 1 -0.3633 0.0817 1.0245 28 1 -0.3634 0.8464 -0.5829 29 1 -0.3633 -0.9279 -0.4415 30 1 3.9754 2.1529 -0.0009 31 1 5.3057 0.0802 -0.0005 32 1 4.1367 -2.1137 0.0104 33 1 2.1206 -3.3205 -0.2410 34 1 0.6405 -2.4676 -0.7412 35 1 2.5944 -2.0752 2.3085 36 1 1.4539 -2.9831 3.3301 37 1 4.5800 -4.2509 4.6319 38 1 0.4565 -4.7594 0.9330 39 1 -1.9328 -2.8813 0.9253 40 1 -0.9017 -3.0959 -0.5096 41 1 -2.6580 -4.6854 -0.7808 42 1 -2.5891 -5.1733 0.9296 43 1 0.0130 -5.5159 -0.3306 44 1 -1.2412 -6.3827 -1.2492 45 1 -0.5240 -7.9347 0.4134 46 1 -2.0531 -7.2732 1.0402 47 1 0.6358 -6.0488 1.7516 48 1 -0.0631 -7.3907 2.6891 49 1 -1.2777 -5.8664 3.8329 50 1 -2.1704 -5.5315 2.3300 51 1 0.2770 -4.1041 3.4291 52 1 -1.3092 -3.4143 3.0088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207151123.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:00 Heat of formation + Delta-G solvation = 35.844471 kcal Electronic energy + Delta-G solvation = -29026.531627 eV Core-core repulsion = 25604.717996 eV Total energy + Delta-G solvation = -3421.813631 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.05142 -39.21834 -36.05418 -33.03863 -32.47895 -32.42828 -32.26331 -30.61828 -27.56931 -27.14920 -25.87445 -25.27508 -24.14849 -22.43537 -21.81418 -21.24665 -20.29544 -20.05112 -18.35500 -16.46648 -16.26124 -15.91613 -15.75795 -14.90386 -14.74025 -14.38000 -14.15569 -13.78277 -13.70357 -13.48360 -13.31838 -12.91403 -12.83548 -12.50784 -12.38194 -12.08780 -11.97216 -11.84366 -11.66936 -11.49690 -11.31530 -11.06102 -10.96184 -10.77582 -10.67914 -10.55269 -10.30293 -10.27194 -10.08004 -10.06705 -9.98714 -9.65131 -9.38370 -9.17795 -8.96498 -8.94615 -8.42233 -8.24458 -7.08895 -6.04534 -4.13754 1.62004 1.83561 3.22913 3.29340 3.31340 4.25075 4.36080 4.78721 4.91445 5.02262 5.17700 5.24246 5.27144 5.28638 5.41588 5.50307 5.52373 5.54621 5.59444 5.66805 5.70868 5.76764 5.85984 6.00531 6.02140 6.03044 6.09815 6.16363 6.20734 6.25402 6.30470 6.35084 6.38220 6.38635 6.42524 6.51108 6.55914 6.58728 6.61308 6.71166 6.74231 6.79062 6.92068 6.94953 7.10905 7.22223 7.24730 7.32042 7.55342 7.90642 8.06882 8.27802 8.31597 8.47736 8.96378 9.52443 10.99469 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010102 B = 0.006508 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.132253 B = 4301.587107 C = 6227.772541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.139 3.861 3 N -0.497 5.497 4 C 0.087 3.913 5 C -0.185 4.185 6 C -0.053 4.053 7 C -0.106 4.106 8 C 0.097 3.903 9 N -0.532 5.532 10 C 0.185 3.815 11 C -0.541 4.541 12 H 0.053 0.947 13 C 0.070 3.930 14 N -0.887 5.887 15 Si 0.877 3.123 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.080 3.920 20 C -0.116 4.116 21 C -0.124 4.124 22 C -0.129 4.129 23 C -0.115 4.115 24 C -0.136 4.136 25 C -0.117 4.117 26 C -0.114 4.114 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.146 0.854 31 H 0.126 0.874 32 H 0.134 0.866 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.025 0.975 36 H 0.040 0.960 37 H 0.262 0.738 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.055 0.945 47 H 0.094 0.906 48 H 0.049 0.951 49 H 0.049 0.951 50 H 0.061 0.939 51 H 0.087 0.913 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.739 0.759 -7.998 11.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.001 3.999 3 N -0.207 5.207 4 C -0.070 4.070 5 C -0.205 4.205 6 C -0.079 4.079 7 C -0.108 4.108 8 C -0.031 4.031 9 N -0.255 5.255 10 C 0.060 3.940 11 C -0.580 4.580 12 H 0.072 0.928 13 C -0.133 4.133 14 N -0.525 5.525 15 Si 0.705 3.295 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.027 4.027 20 C -0.154 4.154 21 C -0.162 4.162 22 C -0.166 4.166 23 C -0.152 4.152 24 C -0.173 4.173 25 C -0.155 4.155 26 C -0.151 4.151 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.163 0.837 31 H 0.144 0.856 32 H 0.152 0.848 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.112 0.888 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.079 0.921 51 H 0.105 0.895 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.378 1.964 -7.687 11.539 hybrid contribution 1.911 -2.480 -0.128 3.134 sum -6.467 -0.517 -7.815 10.157 Atomic orbital electron populations 1.20619 0.89089 1.02054 1.03092 1.21049 0.96822 0.87635 0.94350 1.67440 1.09910 1.29618 1.13683 1.22504 0.89688 0.97906 0.96911 1.22013 1.00950 0.93662 1.03878 1.21603 0.94213 0.98389 0.93708 1.20635 0.93963 0.96378 0.99826 1.20870 0.96534 0.92472 0.93227 1.62531 1.19244 1.39417 1.04340 1.19807 0.88080 0.95354 0.90763 1.21586 1.20142 1.08999 1.07321 0.92843 1.24879 0.96861 0.96496 0.95027 1.69921 1.32430 1.38596 1.11565 0.86895 0.80082 0.84622 0.77893 1.20411 1.21335 1.20131 1.21909 0.92074 0.93647 0.95118 1.21795 0.97610 0.96467 0.99548 1.21829 0.97893 0.95639 1.00793 1.21823 1.00831 0.96313 0.97613 1.21676 0.99919 0.97495 0.96132 1.21907 1.00753 0.98701 0.95931 1.21748 0.98671 0.95801 0.99252 1.21728 1.00841 0.94863 0.97707 0.90223 0.92169 0.90639 0.83701 0.85616 0.84772 0.93480 0.91262 0.95645 0.94225 0.92844 0.90955 0.92133 0.92418 0.93121 0.91090 0.90625 0.93207 0.93028 0.92602 0.88810 0.93265 0.93197 0.92068 0.89460 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.36 9.71 36.00 0.35 -1.01 16 2 C 0.14 2.44 6.78 -82.59 -0.56 1.88 16 3 N -0.50 -8.80 10.27 -9.47 -0.10 -8.90 16 4 C 0.09 1.38 11.18 -17.55 -0.20 1.19 16 5 C -0.19 -2.96 10.11 -39.44 -0.40 -3.36 16 6 C -0.05 -0.95 9.18 -39.28 -0.36 -1.31 16 7 C -0.11 -1.92 4.37 -104.49 -0.46 -2.37 16 8 C 0.10 1.73 4.04 -4.98 -0.02 1.71 16 9 N -0.53 -10.12 4.40 -229.50 -1.01 -11.13 16 10 C 0.19 4.36 4.42 -4.98 -0.02 4.34 16 11 C -0.54 -13.36 6.98 -34.44 -0.24 -13.60 16 12 H 0.05 1.31 5.65 -52.48 -0.30 1.01 16 13 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 14 N -0.89 -24.81 13.29 55.43 0.74 -24.08 16 15 Si 0.88 20.41 29.54 -169.99 -5.02 15.39 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 C 0.08 1.36 0.85 -67.70 -0.06 1.31 16 20 C -0.12 -1.64 5.19 -26.73 -0.14 -1.78 16 21 C -0.12 -1.55 5.48 -26.74 -0.15 -1.70 16 22 C -0.13 -1.70 5.47 -26.73 -0.15 -1.84 16 23 C -0.11 -1.54 5.59 -26.72 -0.15 -1.69 16 24 C -0.14 -2.17 5.47 -26.74 -0.15 -2.32 16 25 C -0.12 -1.80 5.48 -26.74 -0.15 -1.94 16 26 C -0.11 -2.00 4.94 -26.73 -0.13 -2.13 16 27 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.05 5.62 -51.93 -0.29 0.76 16 30 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.13 2.48 8.04 -52.49 -0.42 2.06 16 33 H 0.05 0.91 6.47 -51.93 -0.34 0.58 16 34 H 0.07 1.09 4.50 -51.93 -0.23 0.86 16 35 H 0.03 0.67 6.59 -51.93 -0.34 0.33 16 36 H 0.04 1.03 5.99 -51.92 -0.31 0.72 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.07 1.34 1.50 -51.93 -0.08 1.26 16 39 H 0.06 0.85 7.82 -51.93 -0.41 0.44 16 40 H 0.06 0.80 5.31 -51.93 -0.28 0.52 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.88 4.69 -51.93 -0.24 0.64 16 43 H 0.08 1.14 5.47 -51.93 -0.28 0.86 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.68 7.47 -51.93 -0.39 0.29 16 47 H 0.09 1.79 4.73 -51.93 -0.25 1.54 16 48 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 49 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.06 0.83 4.69 -51.93 -0.24 0.59 16 51 H 0.09 1.86 5.38 -51.93 -0.28 1.58 16 52 H 0.05 0.84 7.82 -51.93 -0.41 0.44 16 LS Contribution 368.69 15.07 5.56 5.56 Total: -1.00 -27.16 368.69 -10.92 -38.08 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -8.02 Total: 7.97 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -3.07 Total: -22.89 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: -0.37 Total: -44.11 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -27.16 -10.92 -38.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207151123.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.924 kcal (2) G-P(sol) polarization free energy of solvation -27.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds