Wall clock time and date at job start Tue Mar 31 2020 10:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31886 * 119.62055 * 2 1 4 4 C 1.31851 * 121.72818 * 180.02562 * 3 2 1 5 5 C 1.38233 * 120.76260 * 359.97438 * 4 3 2 6 6 C 1.38622 * 119.15804 * 359.72544 * 5 4 3 7 7 C 1.38186 * 119.61721 * 179.97438 * 2 1 3 8 8 C 1.50694 * 120.41693 * 359.97300 * 7 2 1 9 9 N 1.46900 * 109.47253 * 286.32228 * 8 7 2 10 10 C 1.46896 * 110.99910 * 294.66401 * 9 8 7 11 11 C 1.50698 * 109.47329 * 294.06948 * 10 9 8 12 12 H 1.08011 * 119.99603 * 5.05948 * 11 10 9 13 13 C 1.37876 * 120.00494 * 185.05856 * 11 10 9 14 14 N 1.31511 * 119.99863 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00029 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47357 * 60.00174 * 15 13 11 17 17 H 1.48499 * 109.47184 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47184 * 299.99677 * 15 13 11 19 19 C 1.46898 * 111.00311 * 170.70784 * 9 8 7 20 20 C 1.53018 * 109.47025 * 295.46713 * 19 9 8 21 21 C 1.52991 * 109.45856 * 164.04464 * 20 19 9 22 22 C 1.52985 * 109.51125 * 315.98755 * 21 20 19 23 23 C 1.53011 * 109.46726 * 112.93893 * 22 21 20 24 24 C 1.53005 * 109.42927 * 284.04152 * 23 22 21 25 25 C 1.52986 * 109.48491 * 75.96315 * 24 23 22 26 26 C 1.52998 * 109.50840 * 247.06293 * 25 24 23 27 27 H 1.09008 * 109.46742 * 274.55931 * 1 2 3 28 28 H 1.09003 * 109.47450 * 34.55232 * 1 2 3 29 29 H 1.08994 * 109.47264 * 154.55567 * 1 2 3 30 30 H 1.08002 * 119.62303 * 179.97438 * 4 3 2 31 31 H 1.08001 * 120.41708 * 180.02562 * 5 4 3 32 32 H 1.08002 * 120.78384 * 180.27449 * 6 5 4 33 33 H 1.09001 * 109.47239 * 166.32064 * 8 7 2 34 34 H 1.09007 * 109.47320 * 46.31847 * 8 7 2 35 35 H 1.09001 * 109.47383 * 54.07222 * 10 9 8 36 36 H 1.09011 * 109.47319 * 174.07408 * 10 9 8 37 37 H 0.96996 * 120.00084 * 179.97438 * 14 13 11 38 38 H 1.08997 * 109.47133 * 55.46707 * 19 9 8 39 39 H 1.08995 * 109.47462 * 284.03861 * 20 19 9 40 40 H 1.08997 * 109.47167 * 44.04933 * 20 19 9 41 41 H 1.09001 * 109.46268 * 195.97927 * 21 20 19 42 42 H 1.09001 * 109.46052 * 75.99526 * 21 20 19 43 43 H 1.08996 * 109.47134 * 352.93947 * 22 21 20 44 44 H 1.09004 * 109.47256 * 232.93255 * 22 21 20 45 45 H 1.09006 * 109.47534 * 164.05871 * 23 22 21 46 46 H 1.08996 * 109.48730 * 44.03286 * 23 22 21 47 47 H 1.09002 * 109.47361 * 315.96008 * 24 23 22 48 48 H 1.09002 * 109.46515 * 195.96876 * 24 23 22 49 49 H 1.08997 * 109.46194 * 127.05236 * 25 24 23 50 50 H 1.09000 * 109.46445 * 7.07684 * 25 24 23 51 51 H 1.09003 * 109.47196 * 284.01869 * 26 25 24 52 52 H 1.08991 * 109.47573 * 164.00628 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4764 1.1950 -0.0005 5 6 4.2267 0.0340 -0.0005 6 6 3.5765 -1.1903 0.0058 7 6 2.1899 -1.2013 0.0005 8 6 1.4372 -2.5068 0.0017 9 7 0.8559 -2.7357 1.3313 10 6 1.9071 -2.9206 2.3406 11 6 2.6618 -4.1928 2.0527 12 1 2.4429 -4.7603 1.1602 13 6 3.6318 -4.6323 2.9286 14 7 3.8979 -3.9415 4.0155 15 14 4.5677 -6.2089 2.5712 16 1 5.2857 -6.0762 1.2781 17 1 5.5476 -6.4601 3.6584 18 1 3.6136 -7.3442 2.4935 19 6 -0.0642 -3.8807 1.3136 20 6 -1.2568 -3.5628 0.4091 21 6 -1.9984 -4.8571 0.0698 22 6 -0.9861 -5.9488 -0.2824 23 6 -1.0183 -7.0393 0.7905 24 6 -0.2909 -6.5437 2.0420 25 6 -1.1838 -5.5540 2.7928 26 6 -0.5610 -4.1578 2.7341 27 1 -0.3633 0.0817 1.0245 28 1 -0.3634 0.8464 -0.5829 29 1 -0.3633 -0.9279 -0.4415 30 1 3.9754 2.1529 -0.0009 31 1 5.3057 0.0802 -0.0005 32 1 4.1367 -2.1137 0.0104 33 1 2.1206 -3.3205 -0.2410 34 1 0.6405 -2.4676 -0.7412 35 1 2.5944 -2.0752 2.3085 36 1 1.4539 -2.9831 3.3301 37 1 4.5800 -4.2509 4.6319 38 1 0.4565 -4.7594 0.9330 39 1 -1.9328 -2.8813 0.9253 40 1 -0.9017 -3.0959 -0.5096 41 1 -2.6580 -4.6854 -0.7808 42 1 -2.5891 -5.1733 0.9296 43 1 0.0130 -5.5159 -0.3306 44 1 -1.2412 -6.3827 -1.2492 45 1 -0.5240 -7.9347 0.4134 46 1 -2.0531 -7.2732 1.0402 47 1 0.6358 -6.0488 1.7516 48 1 -0.0631 -7.3907 2.6891 49 1 -1.2777 -5.8664 3.8329 50 1 -2.1704 -5.5315 2.3300 51 1 0.2770 -4.1041 3.4291 52 1 -1.3092 -3.4143 3.0088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207151123.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:59 Heat of formation + Delta-G solvation = 22.182643 kcal Electronic energy + Delta-G solvation = -29027.124048 eV Core-core repulsion = 25604.717996 eV Total energy + Delta-G solvation = -3422.406052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.41199 -40.51640 -37.49825 -34.78308 -33.91190 -33.76006 -33.53364 -32.04212 -29.18045 -28.54487 -27.23131 -26.62864 -25.73320 -23.92426 -23.17538 -22.50816 -21.74640 -21.27064 -19.76634 -18.28811 -17.68644 -17.27892 -17.12585 -16.60659 -16.19858 -15.71425 -15.58669 -15.05830 -14.96160 -14.77976 -14.67795 -14.49318 -14.13713 -13.94880 -13.86069 -13.41140 -13.26542 -13.20797 -13.05953 -12.97634 -12.77798 -12.66183 -12.57043 -12.16865 -12.01900 -11.95684 -11.86623 -11.78314 -11.62292 -11.47466 -11.30963 -11.08403 -10.78915 -10.59990 -10.46860 -10.29677 -10.25404 -9.57321 -8.77217 -8.05721 -6.23818 0.30132 0.45623 1.33827 1.35680 1.41273 2.38045 2.90686 3.17953 3.47695 3.56759 3.86259 3.96925 4.04331 4.07609 4.12192 4.19588 4.25815 4.32244 4.36319 4.46512 4.48539 4.54797 4.58645 4.72189 4.76250 4.86419 4.89750 4.90904 4.93781 4.97911 5.05672 5.10209 5.16755 5.19569 5.24272 5.29272 5.33927 5.36021 5.38131 5.39346 5.41867 5.47249 5.51927 5.56260 5.58932 5.67610 5.77762 5.86828 5.89771 5.94370 6.17928 6.40417 6.71739 6.98045 7.15086 7.45973 8.93677 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010102 B = 0.006508 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.132253 B = 4301.587107 C = 6227.772541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.128 3.872 3 N -0.512 5.512 4 C 0.087 3.913 5 C -0.185 4.185 6 C -0.075 4.075 7 C -0.124 4.124 8 C 0.106 3.894 9 N -0.527 5.527 10 C 0.208 3.792 11 C -0.525 4.525 12 H 0.054 0.946 13 C 0.021 3.979 14 N -0.925 5.925 15 Si 0.932 3.068 16 H -0.272 1.272 17 H -0.290 1.290 18 H -0.270 1.270 19 C 0.080 3.920 20 C -0.109 4.109 21 C -0.118 4.118 22 C -0.128 4.128 23 C -0.109 4.109 24 C -0.136 4.136 25 C -0.110 4.110 26 C -0.110 4.110 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.181 0.819 31 H 0.151 0.849 32 H 0.119 0.881 33 H 0.025 0.975 34 H 0.096 0.904 35 H -0.008 1.008 36 H 0.009 0.991 37 H 0.259 0.741 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.051 0.949 44 H 0.069 0.931 45 H 0.054 0.946 46 H 0.077 0.923 47 H 0.059 0.941 48 H 0.043 0.957 49 H 0.048 0.952 50 H 0.089 0.911 51 H 0.040 0.960 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.554 0.490 -9.974 13.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.009 4.009 3 N -0.222 5.222 4 C -0.070 4.070 5 C -0.205 4.205 6 C -0.101 4.101 7 C -0.127 4.127 8 C -0.022 4.022 9 N -0.250 5.250 10 C 0.082 3.918 11 C -0.564 4.564 12 H 0.072 0.928 13 C -0.178 4.178 14 N -0.565 5.565 15 Si 0.759 3.241 16 H -0.197 1.197 17 H -0.216 1.216 18 H -0.195 1.195 19 C -0.028 4.028 20 C -0.147 4.147 21 C -0.155 4.155 22 C -0.165 4.165 23 C -0.147 4.147 24 C -0.173 4.173 25 C -0.148 4.148 26 C -0.147 4.147 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.198 0.802 31 H 0.169 0.831 32 H 0.137 0.863 33 H 0.044 0.956 34 H 0.113 0.887 35 H 0.010 0.990 36 H 0.027 0.973 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.073 0.927 46 H 0.095 0.905 47 H 0.077 0.923 48 H 0.061 0.939 49 H 0.066 0.934 50 H 0.107 0.893 51 H 0.058 0.942 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.208 1.684 -9.687 14.173 hybrid contribution 2.500 -2.341 0.485 3.459 sum -7.708 -0.657 -9.202 12.022 Atomic orbital electron populations 1.20622 0.87353 1.03311 1.02955 1.21418 0.98128 0.87333 0.94019 1.67525 1.10860 1.29596 1.14197 1.23105 0.89310 0.99287 0.95327 1.22301 1.02375 0.92918 1.02891 1.21689 0.94621 0.98866 0.94944 1.20734 0.94170 0.96814 1.00964 1.20831 0.96819 0.91808 0.92750 1.62465 1.17907 1.40436 1.04208 1.19323 0.88228 0.93475 0.90810 1.21741 1.19205 1.08890 1.06584 0.92797 1.25560 0.98035 0.99219 0.95014 1.70053 1.33409 1.40351 1.12721 0.86001 0.78901 0.81525 0.77691 1.19713 1.21592 1.19528 1.22006 0.92780 0.92477 0.95511 1.21730 0.96235 0.97864 0.98862 1.21801 0.97655 0.94092 1.01978 1.21796 0.99769 0.96433 0.98495 1.21652 1.00680 0.97632 0.94713 1.21859 0.99776 0.98301 0.97365 1.21723 0.99591 0.93968 0.99501 1.21640 0.99377 0.96742 0.96988 0.90968 0.90522 0.89665 0.80188 0.83089 0.86297 0.95637 0.88654 0.98956 0.97265 0.93177 0.91991 0.91503 0.91810 0.90659 0.90580 0.93033 0.91237 0.92671 0.90457 0.92296 0.93852 0.93360 0.89284 0.94159 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.42 9.71 71.23 0.69 -1.73 16 2 C 0.13 4.44 6.78 42.54 0.29 4.73 16 3 N -0.51 -17.59 10.27 -183.88 -1.89 -19.48 16 4 C 0.09 2.63 11.18 84.69 0.95 3.58 16 5 C -0.19 -5.84 10.11 22.36 0.23 -5.61 16 6 C -0.07 -2.77 9.18 22.46 0.21 -2.56 16 7 C -0.12 -4.58 4.37 -19.78 -0.09 -4.66 16 8 C 0.11 3.81 4.04 85.55 0.35 4.16 16 9 N -0.53 -20.57 4.40 -880.01 -3.87 -24.44 16 10 C 0.21 10.35 4.42 85.56 0.38 10.73 16 11 C -0.52 -27.07 6.98 25.60 0.18 -26.89 16 12 H 0.05 2.74 5.65 -2.91 -0.02 2.73 16 13 C 0.02 1.13 5.46 84.66 0.46 1.59 16 14 N -0.92 -54.13 13.29 21.45 0.28 -53.85 16 15 Si 0.93 43.04 29.54 68.60 2.03 45.07 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 19 C 0.08 2.70 0.85 44.93 0.04 2.74 16 20 C -0.11 -2.83 5.19 30.60 0.16 -2.67 16 21 C -0.12 -2.51 5.48 30.59 0.17 -2.35 16 22 C -0.13 -3.02 5.47 30.59 0.17 -2.85 16 23 C -0.11 -2.67 5.59 30.60 0.17 -2.50 16 24 C -0.14 -4.27 5.47 30.59 0.17 -4.10 16 25 C -0.11 -3.29 5.48 30.59 0.17 -3.12 16 26 C -0.11 -3.91 4.94 30.60 0.15 -3.76 16 27 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.08 2.19 5.62 -2.39 -0.01 2.18 16 30 H 0.18 4.04 8.06 -2.91 -0.02 4.02 16 31 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 32 H 0.12 4.66 8.04 -2.91 -0.02 4.63 16 33 H 0.03 1.02 6.47 -2.39 -0.02 1.01 16 34 H 0.10 2.89 4.50 -2.38 -0.01 2.88 16 35 H -0.01 -0.43 6.59 -2.39 -0.02 -0.45 16 36 H 0.01 0.52 5.99 -2.38 -0.01 0.51 16 37 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 38 H 0.06 2.32 1.50 -2.39 0.00 2.31 16 39 H 0.07 1.68 7.82 -2.39 -0.02 1.66 16 40 H 0.06 1.58 5.31 -2.39 -0.01 1.57 16 41 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.08 1.56 4.69 -2.39 -0.01 1.55 16 43 H 0.05 1.49 5.47 -2.39 -0.01 1.48 16 44 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 45 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 46 H 0.08 1.58 7.47 -2.39 -0.02 1.57 16 47 H 0.06 2.29 4.73 -2.39 -0.01 2.28 16 48 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.09 2.17 4.69 -2.39 -0.01 2.16 16 51 H 0.04 1.82 5.38 -2.39 -0.01 1.80 16 52 H 0.06 1.91 7.82 -2.39 -0.02 1.89 16 Total: -1.00 -61.72 368.69 2.31 -59.41 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: 0.93 Total: 28.57 kcal Atomic # 6 Polarization: -40.11 SS G_CDS: 4.83 Total: -35.28 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -5.47 Total: -97.76 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -61.72 2.31 -59.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207151123.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.591 kcal (2) G-P(sol) polarization free energy of solvation -61.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds