Wall clock time and date at job start Tue Mar 31 2020 10:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38227 * 120.41809 * 2 1 4 4 N 1.31860 * 120.75969 * 179.97438 * 3 2 1 5 5 C 1.31886 * 121.72788 * 0.02562 * 4 3 2 6 6 C 1.38177 * 120.76362 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.41682 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.47066 * 90.00023 * 7 6 5 9 9 C 1.46905 * 110.99964 * 283.87204 * 8 7 6 10 10 C 1.50697 * 109.47337 * 164.29137 * 9 8 7 11 11 H 1.08005 * 119.99759 * 356.60781 * 10 9 8 12 12 C 1.37873 * 120.00265 * 176.60719 * 10 9 8 13 13 N 1.31512 * 119.99908 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 120.00015 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47197 * 270.00456 * 14 12 10 16 16 H 1.48509 * 109.46882 * 30.00125 * 14 12 10 17 17 H 1.48496 * 109.47281 * 149.99774 * 14 12 10 18 18 C 1.46901 * 111.00127 * 159.92262 * 8 7 6 19 19 C 1.53011 * 109.47108 * 53.17947 * 18 8 7 20 20 C 1.52998 * 109.46014 * 164.04883 * 19 18 8 21 21 C 1.52980 * 109.50616 * 315.99174 * 20 19 18 22 22 C 1.53003 * 109.47062 * 112.93640 * 21 20 19 23 23 C 1.53006 * 109.43069 * 284.03787 * 22 21 20 24 24 C 1.52977 * 109.48178 * 75.96266 * 23 22 21 25 25 C 1.53001 * 109.50412 * 247.06028 * 24 23 22 26 26 C 1.38629 * 120.41886 * 180.20667 * 2 1 3 27 27 H 1.08998 * 109.46845 * 90.00029 * 1 2 3 28 28 H 1.08996 * 109.46755 * 210.00139 * 1 2 3 29 29 H 1.09000 * 109.46708 * 330.00373 * 1 2 3 30 30 H 1.07996 * 119.61920 * 359.95264 * 3 2 1 31 31 H 1.07998 * 119.61604 * 179.97438 * 5 4 3 32 32 H 1.09001 * 109.46800 * 329.99847 * 7 6 5 33 33 H 1.08993 * 109.47368 * 209.99792 * 7 6 5 34 34 H 1.09002 * 109.47232 * 44.28911 * 9 8 7 35 35 H 1.09003 * 109.46972 * 284.29340 * 9 8 7 36 36 H 0.97006 * 119.99783 * 179.97438 * 13 12 10 37 37 H 1.08995 * 109.47334 * 173.18464 * 18 8 7 38 38 H 1.08998 * 109.47843 * 284.04550 * 19 18 8 39 39 H 1.08999 * 109.47426 * 44.05453 * 19 18 8 40 40 H 1.09001 * 109.46335 * 195.97894 * 20 19 18 41 41 H 1.09002 * 109.45489 * 75.99246 * 20 19 18 42 42 H 1.09000 * 109.47753 * 352.93252 * 21 20 19 43 43 H 1.09010 * 109.46837 * 232.93213 * 21 20 19 44 44 H 1.09004 * 109.47900 * 164.05042 * 22 21 20 45 45 H 1.09001 * 109.48785 * 44.03207 * 22 21 20 46 46 H 1.08995 * 109.46740 * 315.95502 * 23 22 21 47 47 H 1.09003 * 109.46200 * 195.96591 * 23 22 21 48 48 H 1.09009 * 109.46608 * 127.05417 * 24 23 22 49 49 H 1.09001 * 109.47401 * 7.07799 * 24 23 22 50 50 H 1.08995 * 109.47357 * 284.01827 * 25 24 23 51 51 H 1.09004 * 109.47563 * 164.01074 * 25 24 23 52 52 H 1.07999 * 120.79265 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5255 1.1999 0.0005 5 6 4.2257 0.0823 0.0005 6 6 3.5948 -1.1471 0.0005 7 6 4.4027 -2.4192 0.0000 8 7 4.6657 -2.8329 1.3848 9 6 5.7178 -2.0057 1.9905 10 6 5.6974 -2.1831 3.4869 11 1 4.9406 -2.8012 3.9470 12 6 6.6447 -1.5565 4.2684 13 7 6.6265 -1.7110 5.5743 14 14 7.9541 -0.4881 3.4725 15 1 9.1382 -1.3207 3.1411 16 1 7.4110 0.1170 2.2297 17 1 8.3537 0.5888 4.4136 18 6 5.0134 -4.2586 1.4514 19 6 6.1628 -4.5490 0.4841 20 6 6.7871 -5.9033 0.8262 21 6 6.9585 -6.0184 2.3420 22 6 6.0244 -7.1042 2.8799 23 6 4.5917 -6.5686 2.9208 24 6 4.0142 -6.5478 1.5044 25 6 3.7953 -5.0992 1.0632 26 6 2.2090 -1.1955 -0.0043 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6675 2.1276 -0.0008 31 1 5.3047 0.1285 0.0005 32 1 5.3485 -2.2487 -0.5142 33 1 3.8460 -3.2029 -0.5137 34 1 5.5420 -0.9580 1.7464 35 1 6.6892 -2.3112 1.6016 36 1 7.2933 -1.2705 6.1242 37 1 5.3202 -4.5107 2.4665 38 1 5.7816 -4.5722 -0.5368 39 1 6.9181 -3.7681 0.5722 40 1 7.7607 -5.9868 0.3432 41 1 6.1362 -6.7029 0.4726 42 1 6.7136 -5.0644 2.8090 43 1 7.9912 -6.2809 2.5720 44 1 6.3358 -7.3861 3.8858 45 1 6.0677 -7.9768 2.2281 46 1 4.5934 -5.5573 3.3274 47 1 3.9808 -7.2133 3.5528 48 1 3.0624 -7.0789 1.4923 49 1 4.7102 -7.0343 0.8210 50 1 2.9073 -4.7003 1.5535 51 1 3.6598 -5.0650 -0.0178 52 1 1.6889 -2.1420 -0.0081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207156518.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:39 Heat of formation + Delta-G solvation = 31.808764 kcal Electronic energy + Delta-G solvation = -28362.925214 eV Core-core repulsion = 24940.936582 eV Total energy + Delta-G solvation = -3421.988632 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.17256 -39.39673 -36.21849 -33.36511 -32.79317 -32.46415 -32.41642 -30.73340 -27.91528 -27.15735 -26.11702 -25.56473 -24.13624 -22.89559 -21.69462 -21.21943 -20.51855 -20.12431 -18.25054 -16.81179 -16.65463 -16.25190 -15.93977 -15.27517 -14.49688 -14.23986 -14.05131 -13.88407 -13.80455 -13.74115 -13.37698 -13.17255 -12.95578 -12.74636 -12.66494 -12.56314 -12.41102 -12.32429 -12.02052 -11.69698 -11.45479 -11.26068 -11.06140 -10.92786 -10.81239 -10.69036 -10.63063 -10.35420 -10.15909 -10.02108 -9.85181 -9.46463 -9.39972 -9.28551 -9.16093 -9.10405 -8.55810 -8.49064 -7.34687 -6.04251 -4.00394 1.39990 1.60916 3.27932 3.36942 3.38816 4.03663 4.42882 4.69756 4.80360 4.92719 4.96780 5.03004 5.17258 5.23213 5.25970 5.28719 5.29610 5.34517 5.45984 5.51177 5.56011 5.56929 5.57859 5.61913 5.64349 5.79866 5.84942 5.86815 5.99690 6.05935 6.13289 6.13970 6.19676 6.22670 6.28220 6.31362 6.39110 6.45409 6.47629 6.52829 6.56094 6.61837 6.65329 6.71037 6.80471 6.88860 7.02015 7.03636 7.16784 7.65038 7.90539 8.05395 8.28894 8.66775 9.05156 9.58513 11.08756 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009665 B = 0.005745 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.466953 B = 4872.871372 C = 6712.833044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.144 4.144 3 C 0.086 3.914 4 N -0.484 5.484 5 C 0.102 3.898 6 C -0.103 4.103 7 C 0.089 3.911 8 N -0.514 5.514 9 C 0.156 3.844 10 C -0.503 4.503 11 H 0.080 0.920 12 C 0.071 3.929 13 N -0.899 5.899 14 Si 0.867 3.133 15 H -0.278 1.278 16 H -0.267 1.267 17 H -0.286 1.286 18 C 0.072 3.928 19 C -0.151 4.151 20 C -0.118 4.118 21 C -0.137 4.137 22 C -0.113 4.113 23 C -0.133 4.133 24 C -0.122 4.122 25 C -0.110 4.110 26 C -0.060 4.060 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.028 0.972 35 H -0.010 1.010 36 H 0.263 0.737 37 H 0.125 0.875 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.086 0.914 47 H 0.052 0.948 48 H 0.052 0.948 49 H 0.067 0.933 50 H 0.068 0.932 51 H 0.049 0.951 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.280 -6.110 -12.627 15.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.146 4.146 3 C -0.071 4.071 4 N -0.191 5.191 5 C -0.055 4.055 6 C -0.106 4.106 7 C -0.040 4.040 8 N -0.236 5.236 9 C 0.030 3.970 10 C -0.541 4.541 11 H 0.098 0.902 12 C -0.130 4.130 13 N -0.538 5.538 14 Si 0.695 3.305 15 H -0.204 1.204 16 H -0.192 1.192 17 H -0.212 1.212 18 C -0.036 4.036 19 C -0.190 4.190 20 C -0.155 4.155 21 C -0.174 4.174 22 C -0.150 4.150 23 C -0.170 4.170 24 C -0.159 4.159 25 C -0.148 4.148 26 C -0.086 4.086 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.165 0.835 31 H 0.165 0.835 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.046 0.954 35 H 0.007 0.993 36 H 0.072 0.928 37 H 0.142 0.858 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.111 0.889 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.105 0.895 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.085 0.915 50 H 0.086 0.914 51 H 0.068 0.932 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.167 -5.161 -12.177 15.043 hybrid contribution 1.204 -0.220 -0.693 1.407 sum -5.963 -5.381 -12.870 15.171 Atomic orbital electron populations 1.20666 0.90652 1.02971 1.01980 1.20852 0.97208 0.94312 1.02258 1.22525 0.90076 0.97149 0.97389 1.67631 1.08285 1.31383 1.11851 1.22621 1.00041 0.87398 0.95424 1.20841 0.94526 0.96527 0.98668 1.20994 0.97154 0.93181 0.92629 1.62253 1.45438 1.02769 1.13144 1.20316 0.87610 0.92868 0.96242 1.20954 1.14087 1.30366 0.88678 0.90230 1.24851 0.97369 0.96144 0.94671 1.69885 1.35776 1.44188 1.03926 0.86984 0.82676 0.81032 0.79852 1.20353 1.19168 1.21205 1.22334 0.92181 0.87207 1.01855 1.22330 0.99747 0.97719 0.99219 1.21744 0.99737 0.97637 0.96411 1.21904 0.98737 1.01086 0.95692 1.21639 0.95373 0.97565 1.00447 1.21863 0.95563 1.02906 0.96694 1.21803 1.00145 0.96847 0.97126 1.21681 0.99023 0.94503 0.99578 1.21261 0.93378 0.97793 0.96201 0.91425 0.91423 0.91457 0.83510 0.83458 0.94438 0.90632 0.95371 0.99265 0.92754 0.85775 0.93028 0.91793 0.93277 0.91438 0.88899 0.92940 0.92531 0.92753 0.89532 0.92908 0.92958 0.91450 0.91365 0.93220 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.04 36.01 0.36 -0.67 16 2 C -0.14 -1.97 5.90 -104.48 -0.62 -2.59 16 3 C 0.09 1.29 10.86 -17.54 -0.19 1.09 16 4 N -0.48 -8.61 10.36 -13.25 -0.14 -8.75 16 5 C 0.10 1.83 9.48 -17.55 -0.17 1.66 16 6 C -0.10 -1.71 5.18 -104.48 -0.54 -2.25 16 7 C 0.09 1.44 3.88 -4.97 -0.02 1.42 16 8 N -0.51 -9.87 4.31 -229.51 -0.99 -10.86 16 9 C 0.16 3.59 3.51 -4.97 -0.02 3.57 16 10 C -0.50 -13.73 8.95 -34.44 -0.31 -14.04 16 11 H 0.08 2.38 7.92 -52.48 -0.42 1.97 16 12 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 13 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 14 Si 0.87 21.51 27.40 -169.99 -4.66 16.85 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.27 -6.42 6.64 56.52 0.38 -6.04 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 C 0.07 1.22 1.49 -67.70 -0.10 1.12 16 19 C -0.15 -2.33 4.04 -26.73 -0.11 -2.44 16 20 C -0.12 -1.63 5.48 -26.74 -0.15 -1.78 16 21 C -0.14 -2.10 5.47 -26.74 -0.15 -2.25 16 22 C -0.11 -1.53 5.59 -26.73 -0.15 -1.68 16 23 C -0.13 -1.88 5.47 -26.74 -0.15 -2.03 16 24 C -0.12 -1.54 5.48 -26.74 -0.15 -1.69 16 25 C -0.11 -1.56 4.59 -26.73 -0.12 -1.68 16 26 C -0.06 -0.88 9.55 -39.28 -0.37 -1.26 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.64 8.10 -51.93 -0.42 0.21 16 29 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 30 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.15 2.63 7.47 -52.49 -0.39 2.24 16 32 H 0.04 0.60 7.56 -51.93 -0.39 0.21 16 33 H 0.08 1.06 6.16 -51.93 -0.32 0.74 16 34 H 0.03 0.68 4.91 -51.93 -0.26 0.43 16 35 H -0.01 -0.23 5.39 -51.93 -0.28 -0.51 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.13 2.43 1.84 -51.93 -0.10 2.33 16 38 H 0.05 0.72 7.35 -51.93 -0.38 0.34 16 39 H 0.06 1.12 6.16 -51.93 -0.32 0.80 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.84 4.69 -51.93 -0.24 0.60 16 42 H 0.09 1.76 5.47 -51.93 -0.28 1.48 16 43 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.65 7.47 -51.93 -0.39 0.26 16 46 H 0.09 1.49 5.47 -51.93 -0.28 1.21 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 49 H 0.07 0.80 4.69 -51.93 -0.24 0.56 16 50 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 51 H 0.05 0.64 6.66 -51.93 -0.35 0.29 16 52 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 374.15 15.07 5.64 5.64 Total: -1.00 -30.13 374.15 -10.86 -40.98 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -8.45 Total: 6.04 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -3.04 Total: -23.57 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.35 Total: -45.94 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.66 Total: 16.85 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.13 -10.86 -40.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207156518.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.794 kcal (2) G-P(sol) polarization free energy of solvation -30.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds