Wall clock time and date at job start Tue Mar 31 2020 11:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46823 * 2 1 4 4 C 1.31000 * 119.99912 * 128.11207 * 3 2 1 5 5 C 1.50704 * 120.00089 * 7.39047 * 4 3 2 6 6 C 1.52996 * 109.46822 * 126.45466 * 5 4 3 7 7 C 1.53006 * 109.47187 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47545 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47033 * 180.02562 * 8 7 6 10 10 N 1.46905 * 109.46935 * 179.97438 * 9 8 7 11 11 C 1.46898 * 110.99895 * 66.04477 * 10 9 8 12 12 C 1.50700 * 109.47210 * 58.33781 * 11 10 9 13 13 H 1.08004 * 119.99730 * 5.14179 * 12 11 10 14 14 C 1.37875 * 120.00251 * 185.13712 * 12 11 10 15 15 N 1.31519 * 119.99746 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00061 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47104 * 89.99557 * 16 14 12 18 18 H 1.48497 * 109.47179 * 209.99929 * 16 14 12 19 19 H 1.48500 * 109.47035 * 329.99952 * 16 14 12 20 20 C 1.46899 * 110.99930 * 189.99951 * 10 9 8 21 21 C 1.50692 * 109.46984 * 170.95091 * 20 10 9 22 22 C 1.38674 * 120.41941 * 275.74775 * 21 20 10 23 23 C 1.38632 * 118.41938 * 179.78032 * 22 21 20 24 24 C 1.38222 * 119.16266 * 0.52104 * 23 22 21 25 25 N 1.31853 * 120.76261 * 359.71736 * 24 23 22 26 26 C 1.31883 * 121.72866 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47051 * 60.00092 * 1 2 3 28 28 H 1.08999 * 109.46870 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47400 * 300.00332 * 1 2 3 30 30 H 1.08992 * 109.46933 * 240.00084 * 2 1 3 31 31 H 1.08993 * 109.47016 * 119.99757 * 2 1 3 32 32 H 1.08001 * 120.00307 * 307.83127 * 3 2 1 33 33 H 1.08003 * 120.00008 * 187.39432 * 4 3 2 34 34 H 1.08993 * 109.47349 * 246.45703 * 5 4 3 35 35 H 1.09002 * 109.46862 * 6.45772 * 5 4 3 36 36 H 1.09002 * 109.47604 * 300.00165 * 6 5 4 37 37 H 1.09000 * 109.47596 * 60.00200 * 6 5 4 38 38 H 1.09002 * 109.46833 * 300.00453 * 7 6 5 39 39 H 1.09000 * 109.46840 * 59.99553 * 7 6 5 40 40 H 1.09000 * 109.46538 * 300.00305 * 8 7 6 41 41 H 1.09005 * 109.46749 * 59.99722 * 8 7 6 42 42 H 1.08997 * 109.47168 * 299.99543 * 9 8 7 43 43 H 1.09002 * 109.47136 * 60.00224 * 9 8 7 44 44 H 1.08997 * 109.47580 * 178.33721 * 11 10 9 45 45 H 1.08997 * 109.47302 * 298.34193 * 11 10 9 46 46 H 0.97004 * 119.99440 * 180.02562 * 15 14 12 47 47 H 1.08997 * 109.46990 * 290.94878 * 20 10 9 48 48 H 1.08997 * 109.47206 * 50.95012 * 20 10 9 49 49 H 1.07999 * 120.78963 * 0.02871 * 22 21 20 50 50 H 1.08007 * 120.41932 * 180.21820 * 23 22 21 51 51 H 1.08000 * 119.62191 * 179.74947 * 24 23 22 52 52 H 1.08001 * 119.62004 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9108 1.8050 0.8926 5 6 3.5436 0.7920 1.8116 6 6 5.0668 0.9076 1.7263 7 6 5.7095 -0.1212 2.6589 8 6 7.2327 -0.0052 2.5741 9 6 7.8751 -1.0345 3.5062 10 7 9.3377 -0.9235 3.4243 11 6 9.7984 0.3658 3.9567 12 6 9.3493 0.5075 5.3882 13 1 8.8513 -0.3140 5.8818 14 6 9.5740 1.6859 6.0678 15 7 9.1815 1.8097 7.3169 16 14 10.4347 3.1070 5.2140 17 1 9.4250 3.9712 4.5515 18 1 11.1874 3.9038 6.2158 19 1 11.3760 2.5757 4.1956 20 6 9.9901 -2.0426 4.1171 21 6 11.4686 -2.0197 3.8266 22 6 11.9664 -2.6036 2.6715 23 6 13.3330 -2.5545 2.4435 24 6 14.1494 -1.9391 3.3737 25 7 13.6415 -1.3986 4.4639 26 6 12.3463 -1.4221 4.7110 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8899 32 1 1.6715 2.1212 -0.7387 33 1 3.1815 2.8477 0.9700 34 1 3.2218 0.9797 2.8359 35 1 3.2381 -0.2106 1.5126 36 1 5.3888 0.7200 0.7020 37 1 5.3725 1.9103 2.0253 38 1 5.3876 0.0660 3.6833 39 1 5.4038 -1.1237 2.3595 40 1 7.5548 -0.1921 1.5497 41 1 7.5379 0.9974 2.8737 42 1 7.5531 -0.8479 4.5306 43 1 7.5698 -2.0369 3.2061 44 1 10.8866 0.4097 3.9113 45 1 9.3770 1.1760 3.3618 46 1 9.3394 2.6389 7.7949 47 1 9.8293 -1.9484 5.1910 48 1 9.5657 -2.9836 3.7672 49 1 11.3048 -3.0816 1.9643 50 1 13.7549 -2.9958 1.5525 51 1 15.2155 -1.9002 3.2055 52 1 11.9671 -0.9690 5.6151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208188232.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:55 Heat of formation + Delta-G solvation = 28.313193 kcal Electronic energy + Delta-G solvation = -25847.056722 eV Core-core repulsion = 22424.916510 eV Total energy + Delta-G solvation = -3422.140211 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.80295 -37.60210 -37.01683 -34.70549 -32.70094 -32.34060 -31.65545 -30.90144 -29.06474 -27.77868 -25.90019 -24.16226 -23.39665 -23.11775 -22.58537 -21.42702 -20.56569 -19.35350 -18.32457 -17.03890 -16.59914 -16.09892 -15.87796 -15.27868 -14.99283 -14.93315 -14.39229 -14.34974 -14.19868 -13.92508 -13.27451 -13.21303 -13.03395 -12.75573 -12.65507 -12.46563 -12.37943 -12.24909 -11.99965 -11.64705 -11.38054 -11.33979 -11.27282 -11.16768 -10.85795 -10.75835 -10.54461 -10.46002 -10.31031 -10.19260 -10.00173 -9.80862 -9.55840 -9.37737 -9.01953 -8.98513 -8.61950 -8.53873 -7.24589 -6.13584 -4.13080 1.52172 1.69542 2.13001 3.26410 3.35443 3.40729 4.18670 4.38441 4.59527 4.81061 4.87735 4.90248 5.05868 5.09018 5.14257 5.14653 5.20641 5.29763 5.37082 5.38338 5.43284 5.43639 5.53501 5.55734 5.66334 5.71480 5.80870 5.84591 5.91022 5.92182 5.98484 5.99659 6.05701 6.18846 6.20483 6.26604 6.36237 6.41036 6.44450 6.47362 6.55682 6.60667 6.78328 6.78895 6.83430 6.91429 6.93018 7.11913 7.16227 7.53541 7.98606 8.03744 8.40126 8.40972 8.87822 9.50241 10.98890 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012174 B = 0.002755 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.401229 B =10159.817218 C =11723.508378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.171 4.171 4 C -0.150 4.150 5 C -0.103 4.103 6 C -0.111 4.111 7 C -0.116 4.116 8 C -0.109 4.109 9 C 0.061 3.939 10 N -0.531 5.531 11 C 0.150 3.850 12 C -0.548 4.548 13 H 0.076 0.924 14 C 0.078 3.922 15 N -0.896 5.896 16 Si 0.871 3.129 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.264 1.264 20 C 0.098 3.902 21 C -0.109 4.109 22 C -0.064 4.064 23 C -0.185 4.185 24 C 0.082 3.918 25 N -0.490 5.490 26 C 0.118 3.882 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.027 0.973 45 H 0.027 0.973 46 H 0.264 0.736 47 H 0.059 0.941 48 H 0.065 0.935 49 H 0.129 0.871 50 H 0.126 0.874 51 H 0.146 0.854 52 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.468 -6.736 -13.562 16.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.189 4.189 4 C -0.168 4.168 5 C -0.140 4.140 6 C -0.149 4.149 7 C -0.154 4.154 8 C -0.147 4.147 9 C -0.067 4.067 10 N -0.254 5.254 11 C 0.023 3.977 12 C -0.587 4.587 13 H 0.094 0.906 14 C -0.125 4.125 15 N -0.534 5.534 16 Si 0.698 3.302 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.189 1.189 20 C -0.031 4.031 21 C -0.111 4.111 22 C -0.091 4.091 23 C -0.204 4.204 24 C -0.075 4.075 25 N -0.199 5.199 26 C -0.039 4.039 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.147 0.853 50 H 0.144 0.856 51 H 0.164 0.836 52 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.780 -6.236 -13.302 16.180 hybrid contribution -0.328 0.766 -0.162 0.849 sum -7.108 -5.470 -13.463 16.177 Atomic orbital electron populations 1.21699 0.95397 1.01460 1.01786 1.20804 0.95856 0.94919 1.02739 1.22748 0.99376 0.97500 0.99299 1.22908 0.97230 0.99470 0.97181 1.20928 0.95707 0.98256 0.99084 1.21504 0.93445 1.00062 0.99877 1.21542 0.95829 0.98299 0.99699 1.21483 0.93305 1.00589 0.99347 1.21943 0.88012 0.97211 0.99523 1.62532 1.05242 1.03158 1.54464 1.20229 0.95990 0.87159 0.94275 1.21580 1.39532 1.01171 0.96395 0.90641 1.24891 0.94758 0.98317 0.94564 1.69917 1.46675 1.26810 1.09995 0.86914 0.80458 0.82963 0.79881 1.20229 1.21228 1.18901 1.20833 0.88817 0.94499 0.98902 1.20875 0.97375 0.97781 0.95115 1.21419 0.94899 0.96764 0.95981 1.22018 0.94650 1.02793 1.00981 1.22645 0.99983 0.94623 0.90244 1.67724 1.15142 1.16773 1.20249 1.23009 0.87830 0.93736 0.99348 0.92906 0.92708 0.92702 0.91545 0.90421 0.87727 0.87486 0.91209 0.90770 0.92255 0.91921 0.91855 0.92651 0.92534 0.91337 0.92848 0.93192 0.95504 0.95532 0.92662 0.92242 0.91631 0.85305 0.85584 0.83632 0.81948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 37.16 0.37 -0.72 16 2 C -0.11 -0.91 6.01 -27.88 -0.17 -1.07 16 3 C -0.17 -1.62 9.51 -36.03 -0.34 -1.97 16 4 C -0.15 -1.56 9.51 -36.02 -0.34 -1.90 16 5 C -0.10 -1.12 5.31 -27.88 -0.15 -1.27 16 6 C -0.11 -1.37 5.20 -26.73 -0.14 -1.51 16 7 C -0.12 -1.59 5.21 -26.73 -0.14 -1.73 16 8 C -0.11 -1.80 5.14 -26.73 -0.14 -1.93 16 9 C 0.06 1.09 4.73 -3.82 -0.02 1.08 16 10 N -0.53 -10.34 4.71 -237.53 -1.12 -11.46 16 11 C 0.15 3.45 3.66 -4.98 -0.02 3.43 16 12 C -0.55 -14.33 7.98 -34.44 -0.27 -14.60 16 13 H 0.08 2.13 6.14 -52.48 -0.32 1.81 16 14 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 15 N -0.90 -26.45 13.96 55.43 0.77 -25.67 16 16 Si 0.87 21.40 27.37 -169.99 -4.65 16.74 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.26 -6.44 6.69 56.52 0.38 -6.06 16 20 C 0.10 1.75 4.96 -4.98 -0.02 1.73 16 21 C -0.11 -1.91 4.69 -104.48 -0.49 -2.40 16 22 C -0.06 -0.96 9.88 -39.27 -0.39 -1.35 16 23 C -0.18 -2.50 10.11 -39.44 -0.40 -2.90 16 24 C 0.08 1.24 11.18 -17.55 -0.20 1.04 16 25 N -0.49 -9.08 10.36 -13.25 -0.14 -9.22 16 26 C 0.12 2.26 9.44 -17.55 -0.17 2.10 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.68 5.31 -51.93 -0.28 0.40 16 32 H 0.10 0.90 8.06 -52.49 -0.42 0.47 16 33 H 0.11 1.08 8.06 -52.48 -0.42 0.66 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.75 5.29 -51.93 -0.27 0.48 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 1.30 6.59 -51.93 -0.34 0.96 16 42 H 0.05 1.10 6.28 -51.93 -0.33 0.78 16 43 H 0.05 0.79 7.94 -51.93 -0.41 0.37 16 44 H 0.03 0.66 5.52 -51.93 -0.29 0.37 16 45 H 0.03 0.63 5.69 -51.93 -0.30 0.34 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.06 1.19 6.52 -51.93 -0.34 0.85 16 48 H 0.07 1.01 7.94 -51.93 -0.41 0.60 16 49 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 50 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 51 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 52 H 0.16 3.38 8.06 -52.49 -0.42 2.96 16 LS Contribution 406.51 15.07 6.13 6.13 Total: -1.00 -29.30 406.51 -11.34 -40.64 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -9.21 Total: 4.76 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -3.12 Total: -21.92 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.48 Total: -46.35 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.65 Total: 16.74 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -29.30 -11.34 -40.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208188232.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.949 kcal (2) G-P(sol) polarization free energy of solvation -29.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds